PDB Chemical Component HBD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for HBD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.390	1.397
C1	C6	1.415	1.396
C1	C1'	1.512	1.476
C2	C3	1.388	1.377
C2	H2	1.103	1.080
C3	C4	1.395	1.389
C3	H3	1.104	1.079
C4	C5	1.410	1.390
C4	O4	1.383	1.357
C5	C6	1.410	1.377
C5	H5	1.102	1.079
C6	H6	1.102	1.080
C1'	O1'	1.238	1.216
C1'	N1'	1.369	1.347
N1'	HN'1	1.019	0.970
N1'	HN'2	1.020	0.970
O4	HO4	0.949	0.966

Bond Angles for HBD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	119.5	119.9
C2	C1	C1'	120.8	120.1
C1	C2	C3	120.9	119.9
C1	C2	H2	119.6	120.1
C6	C1	C1'	119.7	120.1
C1	C6	C5	119.5	119.9
C1	C6	H6	120.4	120.1
C1	C1'	O1'	125.5	120.0
C1	C1'	N1'	114.4	120.0
C3	C2	H2	119.5	120.0
C2	C3	C4	120.7	120.1
C2	C3	H3	119.4	120.0
C4	C3	H3	120.0	120.0
C3	C4	C5	119.2	120.2
C3	C4	O4	117.5	119.9
C5	C4	O4	123.3	119.8
C4	C5	C6	120.1	120.0
C4	C5	H5	119.9	120.0
C4	O4	HO4	117.5	106.9
C6	C5	H5	119.9	120.0
C5	C6	H6	120.1	120.0
O1'	C1'	N1'	120.1	120.0
C1'	N1'	HN'1	120.0	120.0
C1'	N1'	HN'2	114.4	120.0
HN'1	N1'	HN'2	125.5	120.0

Torsion Angles for HBD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	C2	C1'	182.5	180.2
C2	C1	C6	C5	359.2	359.5
C2	C1	C6	H6	179.2	180.0
C2	C1	C1'	O1'	37.9	359.9
C2	C1	C1'	N1'	215.4	180.0
C3	C2	C1	H2	180.0	180.0
C1	C2	C3	C4	0.2	360.0
C1	C2	C3	H3	180.2	180.0
C2	C1	C6	C1'	177.5	179.8
C6	C1	C2	C3	1.4	0.2
C6	C1	C2	H2	181.3	180.2
C6	C1	C1'	O1'	215.4	179.7
C6	C1	C1'	N1'	32.9	359.8
C4	C5	C6	C1	358.7	0.5
C1	C6	C5	H5	178.8	180.2
C5	C6	C1	H6	180.0	179.6
C2	C1	C1'	C6	182.5	180.2
C1'	C1	C2	C3	178.9	180.1
C1'	C1	C2	H2	358.8	0.1
C1'	C1	C6	C5	181.7	179.7
C1'	C1	C6	H6	1.7	0.1
O1'	C1'	C1	N1'	182.5	179.9
C1	C1'	N1'	HN'1	2.4	180.0
C1	C1'	N1'	HN'2	180.0	359.7
C3	C2	C1	C6	1.4	0.2
C3	C2	C1	C1'	178.9	180.1
C1	C2	C3	H2	180.0	180.0
C4	C3	C2	H3	180.0	180.0
C2	C3	C4	C5	357.7	0.0
C2	C3	C4	O4	178.6	180.0
H2	C2	C1	C6	181.3	180.2
H2	C2	C1	C1'	358.8	0.1
C1	C2	H2	C3	180.0	180.0
H2	C2	C3	C4	180.2	180.0
H2	C2	C3	H3	0.2	0.0
C4	C3	C2	H2	180.2	180.0
C2	C3	C4	H3	180.0	180.0
C5	C4	C3	O4	179.1	180.0
C3	C4	C5	C6	2.8	359.8
C3	C4	C5	H5	182.8	180.1
C3	C4	O4	HO4	180.0	90.0
H3	C3	C2	H2	0.2	0.0
C2	C3	H3	C4	180.0	180.0
H3	C3	C4	C5	177.7	180.0
H3	C3	C4	O4	358.6	0.0
C1	C6	C5	C4	358.7	0.5
C5	C4	C3	H3	177.7	180.0
C3	C4	C5	O4	181.0	180.0
C5	C4	O4	HO4	1.0	270.0
C6	C5	C4	H5	180.0	179.7
C4	C5	C6	H6	178.7	180.0
O4	C4	C3	H3	358.6	0.0
C3	C4	O4	C5	179.1	180.0
O4	C4	C5	C6	181.9	179.7
O4	C4	C5	H5	1.8	0.0
C5	C6	C1	C1'	181.7	179.7
C1	C6	C5	H6	180.0	180.4
C6	C5	C4	O4	181.9	179.7
C4	C5	C6	H5	180.0	180.3
H5	C5	C4	O4	1.8	0.0
C4	C5	H5	C6	180.0	179.7
H5	C5	C6	H6	358.7	359.7
H6	C6	C1	C1'	1.7	0.1
C1	C6	H6	C5	180.0	179.6
H6	C6	C5	H5	358.7	359.7
C1	C1'	O1'	N1'	177.3	180.1
O1'	C1'	N1'	HN'1	180.0	0.1
O1'	C1'	N1'	HN'2	357.6	179.8
C1	C1'	N1'	O1'	182.4	179.9
HN'1	N1'	C1'	HN'2	182.4	180.3
C1'	N1'	HN'1	HN'2	177.3	179.7
C1'	N1'	HN'2	HN'1	182.6	180.3