PDB Chemical Component HAV
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HAV
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| NA |
CA |
1.480 |
1.468 |
| NA |
HNA1 |
1.020 |
1.009 |
| NA |
HNA2 |
1.020 |
1.008 |
| CA |
CB |
1.513 |
1.528 |
| CA |
C |
1.538 |
1.506 |
| CA |
HA |
1.078 |
1.090 |
| CB |
CG1 |
1.529 |
1.530 |
| CB |
CG2 |
1.528 |
1.530 |
| CB |
HB |
1.083 |
1.090 |
| CG1 |
HG11 |
1.080 |
1.089 |
| CG1 |
HG12 |
1.078 |
1.089 |
| CG1 |
HG13 |
1.079 |
1.090 |
| CG2 |
HG21 |
1.081 |
1.090 |
| CG2 |
HG22 |
1.079 |
1.089 |
| CG2 |
HG23 |
1.081 |
1.090 |
| C |
O |
1.214 |
1.213 |
| C |
N |
1.307 |
1.346 |
| O1 |
N |
1.394 |
1.417 |
| O1 |
HO1 |
0.960 |
0.967 |
| N |
HN |
0.983 |
0.970 |
Bond Angles for HAV
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
NA |
HNA1 |
106.7 |
106.7 |
| CA |
NA |
HNA2 |
113.2 |
106.7 |
| NA |
CA |
CB |
106.7 |
109.5 |
| NA |
CA |
C |
110.6 |
109.5 |
| NA |
CA |
HA |
110.2 |
109.5 |
| HNA1 |
NA |
HNA2 |
113.2 |
106.7 |
| CB |
CA |
C |
109.4 |
109.5 |
| CB |
CA |
HA |
109.7 |
109.5 |
| CA |
CB |
CG1 |
110.1 |
109.5 |
| CA |
CB |
CG2 |
109.0 |
109.5 |
| CA |
CB |
HB |
108.1 |
109.5 |
| C |
CA |
HA |
110.1 |
109.4 |
| CA |
C |
O |
122.0 |
119.9 |
| CA |
C |
N |
116.8 |
120.1 |
| CG1 |
CB |
CG2 |
109.6 |
109.5 |
| CG1 |
CB |
HB |
110.2 |
109.4 |
| CB |
CG1 |
HG11 |
109.4 |
109.5 |
| CB |
CG1 |
HG12 |
109.6 |
109.5 |
| CB |
CG1 |
HG13 |
109.3 |
109.4 |
| CG2 |
CB |
HB |
109.8 |
109.4 |
| CB |
CG2 |
HG21 |
109.4 |
109.5 |
| CB |
CG2 |
HG22 |
109.5 |
109.5 |
| CB |
CG2 |
HG23 |
109.5 |
109.5 |
| HG11 |
CG1 |
HG12 |
109.6 |
109.5 |
| HG11 |
CG1 |
HG13 |
109.4 |
109.4 |
| HG12 |
CG1 |
HG13 |
109.5 |
109.5 |
| HG21 |
CG2 |
HG22 |
109.5 |
109.4 |
| HG21 |
CG2 |
HG23 |
109.5 |
109.4 |
| HG22 |
CG2 |
HG23 |
109.5 |
109.5 |
| O |
C |
N |
121.2 |
120.0 |
| C |
N |
O1 |
120.1 |
120.0 |
| C |
N |
HN |
119.9 |
120.0 |
| N |
O1 |
HO1 |
112.5 |
106.8 |
| O1 |
N |
HN |
119.9 |
120.0 |
Torsion Angles for HAV
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HNA1 |
NA |
CA |
HNA2 |
125.2 |
113.8 |
| CB |
CA |
NA |
C |
119.0 |
120.1 |
| CB |
CA |
NA |
HA |
240.9 |
240.0 |
| NA |
CA |
CB |
CG1 |
197.3 |
59.9 |
| NA |
CA |
CB |
CG2 |
77.0 |
180.0 |
| NA |
CA |
CB |
HB |
317.7 |
300.0 |
| C |
CA |
NA |
HA |
121.9 |
120.0 |
| NA |
CA |
C |
O |
13.1 |
30.0 |
| NA |
CA |
C |
N |
193.8 |
210.0 |
| CA |
NA |
HNA1 |
HNA2 |
234.8 |
246.2 |
| HNA1 |
NA |
CA |
CB |
179.9 |
173.8 |
| HNA1 |
NA |
CA |
C |
61.0 |
53.8 |
| HNA1 |
NA |
CA |
HA |
299.0 |
293.8 |
| CA |
NA |
HNA2 |
HNA1 |
121.6 |
113.8 |
| HNA2 |
NA |
CA |
CB |
54.8 |
60.0 |
| HNA2 |
NA |
CA |
C |
295.8 |
300.0 |
| HNA2 |
NA |
CA |
HA |
173.9 |
180.0 |
| CB |
CA |
NA |
HNA1 |
179.9 |
173.8 |
| CB |
CA |
NA |
HNA2 |
54.8 |
60.0 |
| NA |
CA |
CB |
C |
240.3 |
239.9 |
| NA |
CA |
CB |
HA |
119.4 |
120.0 |
| C |
CA |
CB |
HA |
239.1 |
240.1 |
| CB |
CA |
C |
O |
255.8 |
269.9 |
| CB |
CA |
C |
N |
76.5 |
90.0 |
| CG1 |
CB |
CA |
CG2 |
120.3 |
239.9 |
| CG1 |
CB |
CA |
HB |
239.6 |
120.0 |
| CA |
CB |
CG1 |
HG11 |
61.1 |
180.0 |
| CA |
CB |
CG1 |
HG12 |
181.4 |
300.0 |
| CA |
CB |
CG1 |
HG13 |
301.4 |
60.0 |
| CG2 |
CB |
CA |
HB |
119.3 |
240.0 |
| CA |
CB |
CG2 |
HG21 |
14.3 |
300.0 |
| CA |
CB |
CG2 |
HG22 |
134.3 |
59.9 |
| CA |
CB |
CG2 |
HG23 |
254.4 |
180.0 |
| C |
CA |
NA |
HNA1 |
61.0 |
53.8 |
| C |
CA |
NA |
HNA2 |
295.8 |
300.0 |
| NA |
CA |
C |
CB |
117.3 |
120.0 |
| NA |
CA |
C |
HA |
238.0 |
240.0 |
| CB |
CA |
C |
HA |
120.7 |
119.9 |
| C |
CA |
CB |
CG1 |
317.0 |
180.0 |
| C |
CA |
CB |
CG2 |
196.7 |
300.1 |
| C |
CA |
CB |
HB |
77.4 |
60.0 |
| O |
C |
CA |
N |
179.3 |
180.0 |
| CA |
C |
N |
O1 |
181.2 |
180.0 |
| CA |
C |
N |
HN |
0.5 |
360.0 |
| HA |
CA |
NA |
HNA1 |
299.0 |
293.8 |
| HA |
CA |
NA |
HNA2 |
173.9 |
180.0 |
| NA |
CA |
HA |
CB |
242.8 |
240.0 |
| NA |
CA |
HA |
C |
122.2 |
120.0 |
| CB |
CA |
HA |
C |
239.5 |
240.0 |
| HA |
CA |
CB |
CG1 |
77.9 |
299.9 |
| HA |
CA |
CB |
CG2 |
317.6 |
60.0 |
| HA |
CA |
CB |
HB |
198.3 |
180.0 |
| HA |
CA |
C |
O |
135.1 |
150.0 |
| HA |
CA |
C |
N |
315.8 |
330.0 |
| CG1 |
CB |
CA |
C |
317.0 |
180.0 |
| CG1 |
CB |
CA |
HA |
77.9 |
299.9 |
| CA |
CB |
CG1 |
CG2 |
240.1 |
120.1 |
| CA |
CB |
CG1 |
HB |
119.1 |
240.0 |
| CG2 |
CB |
CG1 |
HB |
239.1 |
119.9 |
| CG1 |
CB |
CG2 |
HG21 |
253.8 |
60.1 |
| CG1 |
CB |
CG2 |
HG22 |
13.8 |
180.0 |
| CG1 |
CB |
CG2 |
HG23 |
133.8 |
300.1 |
| HG11 |
CG1 |
CB |
HG12 |
239.8 |
239.9 |
| HG11 |
CG1 |
CB |
HG13 |
119.8 |
119.9 |
| HG12 |
CG1 |
CB |
HG13 |
240.0 |
240.0 |
| CG2 |
CB |
CA |
C |
196.7 |
300.1 |
| CG2 |
CB |
CA |
HA |
317.6 |
60.0 |
| CA |
CB |
CG2 |
CG1 |
120.6 |
239.9 |
| CA |
CB |
CG2 |
HB |
241.8 |
120.0 |
| CG1 |
CB |
CG2 |
HB |
121.2 |
240.1 |
| CG2 |
CB |
CG1 |
HG11 |
181.1 |
59.9 |
| CG2 |
CB |
CG1 |
HG12 |
301.3 |
179.9 |
| CG2 |
CB |
CG1 |
HG13 |
61.3 |
299.9 |
| HG21 |
CG2 |
CB |
HG22 |
240.0 |
240.1 |
| HG21 |
CG2 |
CB |
HG23 |
120.0 |
120.0 |
| HG22 |
CG2 |
CB |
HG23 |
240.0 |
239.9 |
| HB |
CB |
CA |
C |
77.4 |
60.0 |
| HB |
CB |
CA |
HA |
198.3 |
180.0 |
| CA |
CB |
HB |
CG1 |
239.7 |
120.0 |
| CA |
CB |
HB |
CG2 |
118.8 |
240.0 |
| CG1 |
CB |
HB |
CG2 |
239.1 |
119.9 |
| HB |
CB |
CG1 |
HG11 |
302.0 |
300.0 |
| HB |
CB |
CG1 |
HG12 |
62.2 |
60.0 |
| HB |
CB |
CG1 |
HG13 |
182.2 |
180.1 |
| HB |
CB |
CG2 |
HG21 |
132.6 |
180.0 |
| HB |
CB |
CG2 |
HG22 |
252.6 |
299.9 |
| HB |
CB |
CG2 |
HG23 |
12.6 |
60.0 |
| HG11 |
CG1 |
CB |
CG2 |
181.1 |
59.9 |
| HG11 |
CG1 |
CB |
HB |
302.0 |
300.0 |
| CB |
CG1 |
HG11 |
HG12 |
120.2 |
120.1 |
| CB |
CG1 |
HG11 |
HG13 |
240.3 |
240.1 |
| HG12 |
CG1 |
HG11 |
HG13 |
120.1 |
120.0 |
| HG12 |
CG1 |
CB |
CG2 |
301.3 |
179.9 |
| HG12 |
CG1 |
CB |
HB |
62.2 |
60.0 |
| CB |
CG1 |
HG12 |
HG11 |
239.9 |
239.9 |
| CB |
CG1 |
HG12 |
HG13 |
119.9 |
119.9 |
| HG11 |
CG1 |
HG12 |
HG13 |
239.9 |
240.0 |
| HG13 |
CG1 |
CB |
CG2 |
61.3 |
299.9 |
| HG13 |
CG1 |
CB |
HB |
182.2 |
180.1 |
| CB |
CG1 |
HG13 |
HG11 |
119.8 |
120.0 |
| CB |
CG1 |
HG13 |
HG12 |
239.9 |
240.0 |
| HG11 |
CG1 |
HG13 |
HG12 |
120.2 |
120.0 |
| HG21 |
CG2 |
CB |
HB |
132.6 |
180.0 |
| CB |
CG2 |
HG21 |
HG22 |
120.0 |
120.0 |
| CB |
CG2 |
HG21 |
HG23 |
240.0 |
239.9 |
| HG22 |
CG2 |
HG21 |
HG23 |
120.0 |
119.9 |
| HG22 |
CG2 |
CB |
HB |
252.6 |
299.9 |
| CB |
CG2 |
HG22 |
HG21 |
240.1 |
240.0 |
| CB |
CG2 |
HG22 |
HG23 |
120.0 |
120.1 |
| HG21 |
CG2 |
HG22 |
HG23 |
240.0 |
240.1 |
| HG23 |
CG2 |
CB |
HB |
12.6 |
60.0 |
| CB |
CG2 |
HG23 |
HG21 |
119.9 |
120.0 |
| CB |
CG2 |
HG23 |
HG22 |
240.0 |
239.9 |
| HG21 |
CG2 |
HG23 |
HG22 |
120.0 |
119.9 |
| O |
C |
CA |
HA |
135.1 |
150.0 |
| CA |
C |
O |
N |
180.7 |
180.0 |
| O |
C |
N |
O1 |
1.9 |
0.0 |
| O |
C |
N |
HN |
181.2 |
180.0 |
| N |
C |
CA |
HA |
315.8 |
330.0 |
| CA |
C |
N |
O |
179.3 |
180.0 |
| C |
N |
O1 |
HO1 |
199.7 |
180.0 |
| O1 |
N |
C |
HN |
180.7 |
180.0 |
| C |
N |
O1 |
HN |
179.3 |
180.0 |
| HO1 |
O1 |
N |
HN |
20.4 |
0.0 |
| C |
N |
HN |
O1 |
180.7 |
180.0 |
| HN |
N |
O1 |
HO1 |
20.4 |
0.0 |