Atom Nomenclature for HAS

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for HAS

Atom Name (V3) Atom Name (V2)
FE FE
CHA CHA
CHB CHB
CHC CHC
CHD CHD
NA N A
C1A C1A
C2A C2A
C3A C3A
C4A C4A
CMA CMA
OMD OMD
CAA CAA
CBA CBA
CGA CGA
O1A O1A
O2A O2A
NB N B
C1B C1B
C2B C2B
C3B C3B
C4B C4B
CMB CMB
NC N C
C1C C1C
C2C C2C
C3C C3C
C4C C4C
CMC CMC
CAC CAC
CBC CBC
ND N D
C1D C1D
C2D C2D
C3D C3D
C4D C4D
CMD CMD
CAD CAD
CBD CBD
CGD CGD
O1D O1D
O2D O2D
C11 C11
O11 O11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
C25 C25
C26 C26
C27 C27
C28 C28
C29 C29
C30 C30
C31 C31
C32 C32
HHA HHA
HHB HHB
HHC HHC
HHD HHD
HMA1 HMA1
HMA2 HMA2
HMA3 HMA3
HAA1 HAA1
HAA2 HAA2
HBA1 HBA1
HBA2 HBA2
H2A H2A
HMB1 HMB1
HMB2 HMB2
HMB3 HMB3
HMC1 HMC1
HMC2 HMC2
HMC3 HMC3
HAC HAC
HBC1 HBC1
HBC2 HBC2
HMD HMD
HAD1 HAD1
HAD2 HAD2
HBD1 HBD1
HBD2 HBD2
H2D H2D
H11 H11
HO1 HO1
H121 H121
H122 H122
H131 H131
H132 H132
H14 H14
H161 H161
H162 H162
H171 H171
H172 H172
H18 H18
H201 H201
H202 H202
H211 H211
H212 H212
H22 H22
H241 H241
H242 H242
H251 H251
H252 H252
H253 H253
H261 H261
H262 H262
H263 H263
H271 H271
H272 H272
H273 H273
H281 H281
H282 H282
H29 H29
H311 H311
H312 H312
H313 H313
H321 H321
H322 H322
H323 H323