PDB Chemical Component HAR
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for HAR
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.459 |
1.468 |
| N |
H |
1.019 |
1.009 |
| N |
H2 |
1.020 |
1.009 |
| CA |
C |
1.528 |
1.506 |
| CA |
CB |
1.532 |
1.530 |
| CA |
HA |
1.116 |
1.090 |
| C |
O |
1.245 |
1.208 |
| C |
OXT |
1.248 |
1.342 |
| CB |
CG |
1.503 |
1.529 |
| CB |
HB2 |
1.115 |
1.091 |
| CB |
HB3 |
1.116 |
1.090 |
| CG |
CD |
1.519 |
1.528 |
| CG |
HG2 |
1.115 |
1.091 |
| CG |
HG3 |
1.114 |
1.089 |
| CD |
NE |
1.458 |
1.465 |
| CD |
HD2 |
1.115 |
1.090 |
| CD |
HD3 |
1.115 |
1.090 |
| NE |
CZ |
1.330 |
1.374 |
| NE |
HE |
1.020 |
0.969 |
| CZ |
NH1 |
1.336 |
1.375 |
| CZ |
NH2 |
1.335 |
1.303 |
| NH1 |
OH1 |
1.332 |
1.416 |
| NH1 |
HH1 |
1.020 |
0.970 |
| NH2 |
HH2 |
1.020 |
0.970 |
| OH1 |
HO1 |
0.950 |
0.966 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for HAR
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
111.5 |
106.7 |
| CA |
N |
H2 |
111.4 |
106.6 |
| N |
CA |
C |
111.5 |
109.5 |
| N |
CA |
CB |
110.2 |
109.5 |
| N |
CA |
HA |
107.7 |
109.5 |
| H |
N |
H2 |
111.5 |
106.8 |
| C |
CA |
CB |
109.9 |
109.6 |
| C |
CA |
HA |
108.1 |
109.4 |
| CA |
C |
O |
118.0 |
120.0 |
| CA |
C |
OXT |
118.3 |
120.0 |
| CB |
CA |
HA |
109.4 |
109.4 |
| CA |
CB |
CG |
114.0 |
109.6 |
| CA |
CB |
HB2 |
110.6 |
109.4 |
| CA |
CB |
HB3 |
110.6 |
109.5 |
| O |
C |
OXT |
123.7 |
120.0 |
| C |
OXT |
HXT |
118.3 |
120.1 |
| CG |
CB |
HB2 |
110.5 |
109.4 |
| CG |
CB |
HB3 |
110.5 |
109.5 |
| CB |
CG |
CD |
111.1 |
109.5 |
| CB |
CG |
HG2 |
111.6 |
109.4 |
| CB |
CG |
HG3 |
111.6 |
109.5 |
| HB2 |
CB |
HB3 |
99.7 |
109.4 |
| CD |
CG |
HG2 |
111.6 |
109.5 |
| CD |
CG |
HG3 |
111.6 |
109.5 |
| CG |
CD |
NE |
110.8 |
109.5 |
| CG |
CD |
HD2 |
111.7 |
109.5 |
| CG |
CD |
HD3 |
111.7 |
109.5 |
| HG2 |
CG |
HG3 |
98.7 |
109.4 |
| NE |
CD |
HD2 |
111.7 |
109.5 |
| NE |
CD |
HD3 |
111.8 |
109.5 |
| CD |
NE |
CZ |
124.4 |
120.0 |
| CD |
NE |
HE |
106.9 |
119.9 |
| HD2 |
CD |
HD3 |
98.6 |
109.4 |
| CZ |
NE |
HE |
107.0 |
120.0 |
| NE |
CZ |
NH1 |
120.2 |
120.1 |
| NE |
CZ |
NH2 |
120.0 |
120.0 |
| NH1 |
CZ |
NH2 |
119.8 |
119.9 |
| CZ |
NH1 |
OH1 |
119.1 |
120.1 |
| CZ |
NH1 |
HH1 |
108.8 |
119.9 |
| CZ |
NH2 |
HH2 |
83.4 |
120.1 |
| OH1 |
NH1 |
HH1 |
108.7 |
120.0 |
| NH1 |
OH1 |
HO1 |
119.1 |
106.8 |
Torsion Angles for HAR
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
125.2 |
113.8 |
| C |
CA |
N |
CB |
122.3 |
120.1 |
| C |
CA |
N |
HA |
241.6 |
240.0 |
| N |
CA |
C |
O |
349.5 |
330.0 |
| N |
CA |
C |
OXT |
170.7 |
150.0 |
| CB |
CA |
N |
HA |
119.3 |
119.9 |
| N |
CA |
CB |
CG |
299.3 |
300.1 |
| N |
CA |
CB |
HB2 |
64.6 |
60.1 |
| N |
CA |
CB |
HB3 |
174.1 |
180.0 |
| CA |
N |
H |
H2 |
234.8 |
246.3 |
| H |
N |
CA |
C |
180.0 |
173.8 |
| H |
N |
CA |
CB |
57.7 |
53.7 |
| H |
N |
CA |
HA |
298.4 |
293.8 |
| CA |
N |
H2 |
H |
125.2 |
113.8 |
| H2 |
N |
CA |
C |
54.7 |
60.0 |
| H2 |
N |
CA |
CB |
292.4 |
299.9 |
| H2 |
N |
CA |
HA |
173.1 |
180.0 |
| C |
CA |
N |
H |
180.0 |
173.8 |
| C |
CA |
N |
H2 |
54.7 |
60.0 |
| N |
CA |
C |
CB |
237.5 |
239.9 |
| N |
CA |
C |
HA |
118.2 |
120.0 |
| CB |
CA |
C |
HA |
240.7 |
240.1 |
| C |
CA |
CB |
CG |
176.0 |
180.0 |
| C |
CA |
CB |
HB2 |
301.3 |
300.0 |
| C |
CA |
CB |
HB3 |
50.8 |
59.9 |
| O |
C |
CA |
OXT |
178.8 |
180.0 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| CB |
CA |
N |
H |
57.7 |
53.7 |
| CB |
CA |
N |
H2 |
292.4 |
299.9 |
| N |
CA |
CB |
C |
123.3 |
120.1 |
| N |
CA |
CB |
HA |
241.7 |
240.0 |
| C |
CA |
CB |
HA |
118.5 |
119.9 |
| CB |
CA |
C |
O |
112.1 |
90.0 |
| CB |
CA |
C |
OXT |
293.3 |
270.1 |
| CG |
CB |
CA |
HB2 |
234.7 |
240.0 |
| CG |
CB |
CA |
HB3 |
125.2 |
120.1 |
| CA |
CB |
CG |
CD |
156.0 |
180.0 |
| CA |
CB |
CG |
HG2 |
281.3 |
300.0 |
| CA |
CB |
CG |
HG3 |
30.7 |
59.9 |
| HB2 |
CB |
CA |
HB3 |
250.5 |
240.1 |
| HA |
CA |
N |
H |
298.4 |
293.8 |
| HA |
CA |
N |
H2 |
173.1 |
180.0 |
| N |
CA |
HA |
C |
239.4 |
240.0 |
| N |
CA |
HA |
CB |
119.8 |
120.0 |
| C |
CA |
HA |
CB |
240.4 |
240.0 |
| HA |
CA |
C |
O |
231.3 |
210.0 |
| HA |
CA |
C |
OXT |
52.5 |
30.0 |
| HA |
CA |
CB |
CG |
57.6 |
60.1 |
| HA |
CA |
CB |
HB2 |
182.9 |
180.0 |
| HA |
CA |
CB |
HB3 |
292.3 |
299.9 |
| O |
C |
CA |
CB |
112.1 |
90.0 |
| O |
C |
CA |
HA |
231.3 |
210.0 |
| CA |
C |
O |
OXT |
181.3 |
180.0 |
| O |
C |
OXT |
HXT |
1.3 |
0.0 |
| OXT |
C |
CA |
CB |
293.3 |
270.1 |
| OXT |
C |
CA |
HA |
52.5 |
30.0 |
| CA |
C |
OXT |
O |
178.7 |
180.0 |
| CG |
CB |
CA |
HA |
57.6 |
60.1 |
| CA |
CB |
CG |
HB2 |
125.3 |
120.0 |
| CA |
CB |
CG |
HB3 |
234.7 |
239.9 |
| HB2 |
CB |
CG |
HB3 |
109.4 |
119.9 |
| CD |
CG |
CB |
HG2 |
234.8 |
240.0 |
| CD |
CG |
CB |
HG3 |
125.3 |
120.1 |
| CB |
CG |
CD |
NE |
305.5 |
180.0 |
| CB |
CG |
CD |
HD2 |
70.8 |
300.0 |
| CB |
CG |
CD |
HD3 |
180.2 |
60.0 |
| HG2 |
CG |
CB |
HG3 |
250.5 |
240.1 |
| HB2 |
CB |
CA |
HA |
182.9 |
180.0 |
| CA |
CB |
HB2 |
CG |
232.7 |
239.9 |
| CA |
CB |
HB2 |
HB3 |
116.4 |
120.0 |
| CG |
CB |
HB2 |
HB3 |
243.7 |
240.0 |
| HB2 |
CB |
CG |
CD |
30.7 |
60.0 |
| HB2 |
CB |
CG |
HG2 |
155.9 |
180.0 |
| HB2 |
CB |
CG |
HG3 |
265.4 |
299.9 |
| HB3 |
CB |
CA |
HA |
292.3 |
299.9 |
| CA |
CB |
HB3 |
CG |
127.2 |
120.2 |
| CA |
CB |
HB3 |
HB2 |
243.6 |
240.1 |
| CG |
CB |
HB3 |
HB2 |
116.4 |
119.9 |
| HB3 |
CB |
CG |
CD |
281.3 |
300.1 |
| HB3 |
CB |
CG |
HG2 |
46.5 |
60.1 |
| HB3 |
CB |
CG |
HG3 |
156.0 |
180.0 |
| CD |
CG |
CB |
HB2 |
30.7 |
60.0 |
| CD |
CG |
CB |
HB3 |
281.3 |
300.1 |
| CB |
CG |
CD |
HG2 |
125.2 |
120.0 |
| CB |
CG |
CD |
HG3 |
234.7 |
239.9 |
| HG2 |
CG |
CD |
HG3 |
109.5 |
119.9 |
| NE |
CD |
CG |
HD2 |
234.7 |
240.0 |
| NE |
CD |
CG |
HD3 |
125.3 |
120.0 |
| CG |
CD |
NE |
CZ |
191.3 |
180.0 |
| CG |
CD |
NE |
HE |
66.1 |
0.0 |
| HD2 |
CD |
CG |
HD3 |
250.6 |
240.0 |
| HG2 |
CG |
CB |
HB2 |
155.9 |
180.0 |
| HG2 |
CG |
CB |
HB3 |
46.5 |
60.1 |
| CB |
CG |
HG2 |
CD |
235.1 |
240.0 |
| CB |
CG |
HG2 |
HG3 |
117.5 |
120.0 |
| CD |
CG |
HG2 |
HG3 |
242.5 |
240.0 |
| HG2 |
CG |
CD |
NE |
180.3 |
60.0 |
| HG2 |
CG |
CD |
HD2 |
305.5 |
180.0 |
| HG2 |
CG |
CD |
HD3 |
54.9 |
300.0 |
| HG3 |
CG |
CB |
HB2 |
265.4 |
299.9 |
| HG3 |
CG |
CB |
HB3 |
156.0 |
180.0 |
| CB |
CG |
HG3 |
CD |
125.0 |
120.1 |
| CB |
CG |
HG3 |
HG2 |
242.5 |
240.1 |
| CD |
CG |
HG3 |
HG2 |
117.5 |
120.0 |
| HG3 |
CG |
CD |
NE |
70.8 |
300.1 |
| HG3 |
CG |
CD |
HD2 |
196.1 |
60.1 |
| HG3 |
CG |
CD |
HD3 |
305.5 |
180.0 |
| NE |
CD |
CG |
HG2 |
180.3 |
60.0 |
| NE |
CD |
CG |
HG3 |
70.8 |
300.1 |
| CG |
CD |
NE |
HD2 |
125.3 |
120.0 |
| CG |
CD |
NE |
HD3 |
234.7 |
240.0 |
| HD2 |
CD |
NE |
HD3 |
109.4 |
120.0 |
| CZ |
NE |
CD |
HE |
125.3 |
180.0 |
| CD |
NE |
CZ |
NH1 |
0.7 |
180.0 |
| CD |
NE |
CZ |
NH2 |
180.0 |
360.0 |
| HD2 |
CD |
CG |
HG2 |
305.5 |
180.0 |
| HD2 |
CD |
CG |
HG3 |
196.1 |
60.1 |
| CG |
CD |
HD2 |
NE |
235.3 |
240.0 |
| CG |
CD |
HD2 |
HD3 |
117.6 |
120.0 |
| NE |
CD |
HD2 |
HD3 |
242.4 |
240.0 |
| HD2 |
CD |
NE |
CZ |
66.1 |
60.0 |
| HD2 |
CD |
NE |
HE |
300.8 |
240.0 |
| HD3 |
CD |
CG |
HG2 |
54.9 |
300.0 |
| HD3 |
CD |
CG |
HG3 |
305.5 |
180.0 |
| CG |
CD |
HD3 |
NE |
124.8 |
120.0 |
| CG |
CD |
HD3 |
HD2 |
242.4 |
240.0 |
| NE |
CD |
HD3 |
HD2 |
117.6 |
120.0 |
| HD3 |
CD |
NE |
CZ |
316.6 |
300.0 |
| HD3 |
CD |
NE |
HE |
191.4 |
120.0 |
| CZ |
NE |
CD |
HD2 |
66.1 |
60.0 |
| CZ |
NE |
CD |
HD3 |
316.6 |
300.0 |
| CD |
NE |
CZ |
HE |
234.8 |
180.0 |
| NH1 |
CZ |
NE |
NH2 |
180.7 |
180.1 |
| NE |
CZ |
NH1 |
OH1 |
210.4 |
180.0 |
| NE |
CZ |
NH1 |
HH1 |
85.1 |
359.9 |
| NE |
CZ |
NH2 |
HH2 |
343.6 |
180.1 |
| HE |
NE |
CD |
HD2 |
300.8 |
240.0 |
| HE |
NE |
CD |
HD3 |
191.4 |
120.0 |
| CD |
NE |
HE |
CZ |
135.2 |
180.0 |
| HE |
NE |
CZ |
NH1 |
125.9 |
0.0 |
| HE |
NE |
CZ |
NH2 |
305.3 |
180.0 |
| NH1 |
CZ |
NE |
HE |
125.9 |
0.0 |
| NE |
CZ |
NH1 |
NH2 |
179.3 |
179.9 |
| NH1 |
CZ |
NH2 |
HH2 |
163.0 |
360.0 |
| OH1 |
NH1 |
CZ |
HH1 |
125.3 |
180.1 |
| CZ |
NH1 |
OH1 |
HO1 |
180.0 |
180.0 |
| NH2 |
CZ |
NE |
HE |
305.3 |
180.0 |
| NE |
CZ |
NH2 |
NH1 |
180.6 |
180.1 |
| NH2 |
CZ |
NH1 |
OH1 |
31.1 |
0.1 |
| NH2 |
CZ |
NH1 |
HH1 |
265.8 |
180.0 |
| OH1 |
NH1 |
CZ |
NH2 |
31.1 |
0.1 |
| CZ |
NH1 |
OH1 |
HH1 |
234.7 |
179.9 |
| HH1 |
NH1 |
CZ |
NH2 |
265.8 |
180.0 |
| CZ |
NH1 |
HH1 |
OH1 |
131.2 |
180.1 |
| HH1 |
NH1 |
OH1 |
HO1 |
305.3 |
0.1 |
| HO1 |
OH1 |
NH1 |
HH1 |
305.3 |
0.1 |