PDB Chemical Component H9Y
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for H9Y
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O0Q |
C0K |
1.229 |
1.216 |
| C0K |
N0M |
1.360 |
1.347 |
| C0K |
N0H |
1.376 |
1.345 |
| C0E |
C0D |
1.545 |
1.530 |
| C0E |
N0H |
1.479 |
1.465 |
| C0D |
O0B |
1.425 |
1.429 |
| N0M |
C0N |
1.355 |
1.348 |
| N0H |
C0P |
1.421 |
1.368 |
| F07 |
C01 |
1.351 |
1.351 |
| C00 |
C01 |
1.411 |
1.384 |
| C00 |
C05 |
1.426 |
1.386 |
| C0N |
O0S |
1.229 |
1.218 |
| C0N |
C0O |
1.467 |
1.416 |
| C0P |
C0O |
1.360 |
1.350 |
| O0B |
C05 |
1.381 |
1.360 |
| C01 |
C02 |
1.414 |
1.385 |
| C05 |
C04 |
1.417 |
1.392 |
| C02 |
C03 |
1.411 |
1.382 |
| C04 |
C03 |
1.418 |
1.385 |
| C04 |
O0A |
1.374 |
1.360 |
| F13 |
C0Y |
1.336 |
1.350 |
| C0Z |
C0Y |
1.445 |
1.409 |
| C0Z |
C0C |
1.423 |
1.363 |
| O0A |
C0C |
1.378 |
1.358 |
| C0Y |
C0X |
1.349 |
1.348 |
| C0C |
C0V |
1.428 |
1.418 |
| C0X |
N0W |
1.382 |
1.377 |
| C0V |
N0W |
1.393 |
1.378 |
| C0V |
C10 |
1.420 |
1.381 |
| N0W |
C11 |
1.381 |
1.358 |
| C10 |
C14 |
1.423 |
1.411 |
| C11 |
C14 |
1.365 |
1.381 |
| C14 |
C16 |
1.448 |
1.432 |
| C16 |
N19 |
1.153 |
1.136 |
| C00 |
H1 |
1.080 |
1.080 |
| C02 |
H2 |
1.080 |
1.079 |
| C03 |
H3 |
1.080 |
1.080 |
| C0D |
H4 |
1.100 |
1.090 |
| C0D |
H5 |
1.100 |
1.090 |
| C0E |
H6 |
1.100 |
1.090 |
| C0E |
H7 |
1.100 |
1.091 |
| C0O |
H8 |
1.080 |
1.080 |
| C0P |
H9 |
1.080 |
1.080 |
| C0X |
H10 |
1.080 |
1.080 |
| C0Z |
H11 |
1.080 |
1.080 |
| C10 |
H12 |
1.080 |
1.079 |
| C11 |
H13 |
1.080 |
1.081 |
| N0M |
H14 |
1.000 |
0.970 |
Bond Angles for H9Y
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N0H |
C0K |
N0M |
116.0 |
120.9 |
| C0K |
N0M |
C0N |
128.1 |
120.2 |
| C0K |
N0M |
H14 |
115.9 |
119.9 |
| C0E |
N0H |
C0K |
123.1 |
119.6 |
| C0K |
N0H |
C0P |
121.0 |
120.7 |
| C0E |
C0D |
O0B |
109.4 |
109.5 |
| C0E |
C0D |
H4 |
109.5 |
109.5 |
| C0E |
C0D |
H5 |
109.5 |
109.5 |
| C0E |
N0H |
C0P |
115.9 |
119.7 |
| N0H |
C0E |
H6 |
108.6 |
109.5 |
| N0H |
C0E |
H7 |
108.5 |
109.5 |
| O0B |
C0D |
H4 |
109.5 |
109.5 |
| O0B |
C0D |
H5 |
109.5 |
109.5 |
| N0M |
C0N |
O0S |
121.1 |
120.3 |
| N0H |
C0P |
H9 |
119.7 |
120.1 |
| C01 |
C00 |
C05 |
120.3 |
120.0 |
| C00 |
C01 |
C02 |
120.1 |
120.1 |
| C01 |
C00 |
H1 |
119.9 |
120.0 |
| C00 |
C05 |
C04 |
119.0 |
119.9 |
| C05 |
C00 |
H1 |
119.8 |
120.0 |
| C0O |
C0N |
O0S |
124.1 |
120.3 |
| C0N |
C0O |
H8 |
120.3 |
120.5 |
| C0P |
C0O |
H8 |
120.2 |
120.4 |
| C01 |
C02 |
C03 |
120.2 |
120.1 |
| C01 |
C02 |
H2 |
119.9 |
119.9 |
| C05 |
C04 |
O0A |
119.1 |
120.0 |
| C03 |
C02 |
H2 |
119.9 |
120.0 |
| C02 |
C03 |
H3 |
120.1 |
120.0 |
| C04 |
C03 |
H3 |
120.1 |
120.0 |
| C04 |
O0A |
C0C |
122.5 |
117.9 |
| C0Y |
C0X |
N0W |
120.2 |
120.8 |
| C0Y |
C0X |
H10 |
119.9 |
119.6 |
| C0C |
C0V |
N0W |
115.4 |
119.8 |
| C0C |
C0V |
C10 |
137.3 |
131.9 |
| C0V |
N0W |
C0X |
125.8 |
119.9 |
| C0X |
N0W |
C11 |
125.1 |
131.3 |
| N0W |
C0X |
H10 |
119.9 |
119.6 |
| C10 |
C0V |
N0W |
107.3 |
108.3 |
| C0V |
N0W |
C11 |
109.1 |
108.8 |
| C0V |
C10 |
C14 |
106.3 |
107.0 |
| C0V |
C10 |
H12 |
126.9 |
126.5 |
| N0W |
C11 |
H13 |
125.6 |
125.6 |
| C10 |
C14 |
C11 |
108.7 |
107.3 |
| C14 |
C10 |
H12 |
126.9 |
126.5 |
| C14 |
C11 |
H13 |
125.7 |
125.7 |
| H4 |
C0D |
H5 |
109.4 |
109.5 |
| H6 |
C0E |
H7 |
109.4 |
109.5 |
Torsion Angles for H9Y
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O0Q |
C0K |
N0M |
H14 |
360.0 |
0.3 |
| C0E |
N0H |
C0K |
N0M |
180.1 |
180.0 |
| N0M |
C0K |
N0H |
C0P |
360.0 |
0.1 |
| C0K |
N0M |
C0N |
O0S |
180.1 |
180.1 |
| N0H |
C0K |
N0M |
C0N |
360.0 |
359.9 |
| N0H |
C0K |
N0M |
H14 |
180.0 |
180.0 |
| C0E |
N0H |
C0K |
C0P |
180.1 |
180.0 |
| C0K |
N0H |
C0E |
H6 |
173.0 |
330.0 |
| C0K |
N0H |
C0E |
H7 |
54.1 |
210.0 |
| C0K |
N0H |
C0P |
H9 |
180.1 |
180.0 |
| O0B |
C0D |
C0E |
H4 |
240.0 |
240.0 |
| O0B |
C0D |
C0E |
H5 |
120.0 |
120.0 |
| H4 |
C0D |
C0E |
H5 |
240.0 |
240.0 |
| C0K |
N0H |
C0E |
C0P |
179.9 |
180.0 |
| N0H |
C0E |
C0D |
O0B |
290.4 |
65.0 |
| N0H |
C0E |
C0D |
H4 |
50.4 |
185.0 |
| N0H |
C0E |
C0D |
H5 |
170.4 |
305.0 |
| C0E |
N0H |
C0P |
H9 |
0.0 |
0.0 |
| H6 |
C0E |
N0H |
H7 |
118.9 |
120.0 |
| C0E |
C0D |
O0B |
H4 |
120.0 |
120.0 |
| C0E |
C0D |
O0B |
H5 |
240.0 |
240.0 |
| H4 |
C0D |
O0B |
H5 |
120.0 |
120.0 |
| C0K |
N0M |
C0N |
H14 |
180.0 |
180.0 |
| C0O |
C0N |
N0M |
O0S |
180.0 |
179.9 |
| N0M |
C0N |
C0O |
H8 |
180.0 |
180.0 |
| C0P |
N0H |
C0K |
N0M |
360.0 |
0.1 |
| C0E |
N0H |
C0P |
C0K |
179.9 |
180.0 |
| C0P |
N0H |
C0E |
H6 |
353.0 |
150.0 |
| C0P |
N0H |
C0E |
H7 |
234.1 |
30.0 |
| N0H |
C0P |
C0O |
H8 |
179.9 |
180.0 |
| F07 |
C01 |
C00 |
H1 |
360.0 |
359.7 |
| F07 |
C01 |
C02 |
H2 |
360.0 |
359.9 |
| C01 |
C00 |
C05 |
C04 |
0.0 |
360.0 |
| C05 |
C00 |
C01 |
H1 |
180.0 |
180.3 |
| C00 |
C01 |
C02 |
C03 |
360.0 |
0.0 |
| C00 |
C01 |
C02 |
H2 |
180.0 |
179.9 |
| C05 |
C00 |
C01 |
C02 |
360.0 |
0.0 |
| C01 |
C00 |
C05 |
H1 |
180.0 |
179.7 |
| C00 |
C05 |
C04 |
O0A |
180.0 |
180.0 |
| O0S |
C0N |
C0O |
H8 |
0.0 |
360.0 |
| C0K |
N0M |
C0N |
C0O |
0.0 |
360.0 |
| N0M |
C0N |
C0O |
O0S |
180.0 |
180.1 |
| C0P |
C0O |
C0N |
H8 |
180.0 |
180.0 |
| C0K |
N0H |
C0P |
C0O |
0.1 |
359.9 |
| C0E |
N0H |
C0P |
C0O |
180.0 |
180.0 |
| C0P |
C0O |
C0N |
O0S |
180.0 |
180.0 |
| C0N |
C0O |
C0P |
H8 |
180.0 |
180.0 |
| O0B |
C05 |
C00 |
H1 |
0.1 |
0.3 |
| C02 |
C01 |
C00 |
C05 |
360.0 |
0.0 |
| C02 |
C01 |
C00 |
H1 |
180.0 |
179.7 |
| C03 |
C02 |
C01 |
H2 |
180.0 |
180.1 |
| C01 |
C02 |
C03 |
H3 |
180.0 |
180.0 |
| C04 |
C05 |
C00 |
H1 |
180.0 |
180.3 |
| C05 |
C04 |
C03 |
H3 |
180.0 |
180.0 |
| C05 |
C04 |
O0A |
C0C |
262.6 |
185.7 |
| C01 |
C02 |
C03 |
H2 |
180.0 |
179.9 |
| C04 |
C03 |
C02 |
H3 |
180.0 |
179.9 |
| C00 |
C05 |
C04 |
C03 |
360.0 |
360.0 |
| C04 |
C03 |
C02 |
H2 |
180.0 |
180.0 |
| C02 |
C03 |
C04 |
H3 |
180.0 |
180.1 |
| O0A |
C04 |
C03 |
H3 |
359.9 |
359.9 |
| F13 |
C0Y |
C0X |
N0W |
180.1 |
180.0 |
| F13 |
C0Y |
C0X |
H10 |
0.0 |
0.0 |
| C0Z |
C0Y |
C0X |
N0W |
360.0 |
0.0 |
| C0Z |
C0Y |
C0X |
H10 |
179.9 |
180.0 |
| C04 |
O0A |
C0C |
C0Z |
9.0 |
246.9 |
| C0Z |
C0C |
C0V |
N0W |
360.0 |
0.0 |
| C0Z |
C0C |
C0V |
C10 |
180.2 |
180.0 |
| C0V |
N0W |
C0X |
C0Y |
0.1 |
0.0 |
| C0Y |
C0X |
N0W |
C11 |
179.9 |
179.9 |
| N0W |
C0X |
C0Y |
H10 |
180.0 |
180.0 |
| C04 |
O0A |
C0C |
C0V |
188.9 |
67.2 |
| C0C |
C0V |
N0W |
C0X |
360.0 |
359.9 |
| C10 |
C0V |
C0C |
N0W |
180.2 |
180.0 |
| C0C |
C0V |
N0W |
C11 |
180.1 |
180.0 |
| C0C |
C0V |
C10 |
C14 |
179.8 |
180.0 |
| C0C |
C0V |
C10 |
H12 |
359.8 |
0.0 |
| C0Y |
C0X |
N0W |
H10 |
180.0 |
180.0 |
| C10 |
C0V |
N0W |
C0X |
179.8 |
180.0 |
| C0V |
N0W |
C0X |
C11 |
180.2 |
180.1 |
| C0X |
N0W |
C11 |
H13 |
0.2 |
0.1 |
| C0Y |
C0X |
N0W |
C0V |
0.1 |
0.0 |
| C0C |
C0V |
N0W |
C10 |
180.2 |
180.0 |
| C0X |
N0W |
C0V |
C11 |
179.8 |
179.9 |
| C0V |
N0W |
C0X |
H10 |
180.1 |
180.0 |
| N0W |
C0V |
C10 |
C14 |
360.0 |
360.0 |
| N0W |
C0V |
C10 |
H12 |
180.0 |
180.0 |
| C0V |
N0W |
C11 |
H13 |
180.1 |
180.0 |
| C0C |
C0V |
C10 |
N0W |
179.8 |
180.0 |
| C10 |
C0V |
N0W |
C11 |
360.0 |
0.0 |
| C0V |
C10 |
C14 |
C11 |
0.0 |
360.0 |
| C14 |
C10 |
C0V |
H12 |
180.0 |
180.0 |
| C0V |
N0W |
C11 |
C0X |
179.8 |
179.9 |
| C11 |
N0W |
C0X |
H10 |
359.9 |
359.9 |
| C14 |
C11 |
N0W |
H13 |
180.0 |
179.9 |
| C14 |
C10 |
C0V |
N0W |
360.0 |
360.0 |
| C0V |
C10 |
C14 |
H12 |
180.0 |
180.0 |
| C10 |
C14 |
C11 |
H13 |
179.9 |
180.0 |
| C0X |
N0W |
C11 |
C14 |
180.2 |
180.0 |
| C0V |
N0W |
C11 |
C14 |
0.0 |
359.9 |
| N0W |
C11 |
C14 |
H13 |
180.0 |
180.1 |
| C11 |
C14 |
C10 |
H12 |
180.0 |
180.0 |
| C01 |
C00 |
H1 |
C05 |
180.0 |
180.3 |
| H1 |
C00 |
C01 |
C02 |
180.0 |
179.7 |
| H1 |
C00 |
C05 |
C04 |
180.0 |
180.3 |
| C01 |
C02 |
H2 |
C03 |
180.0 |
180.1 |
| H2 |
C02 |
C03 |
H3 |
0.1 |
0.1 |
| H3 |
C03 |
C02 |
H2 |
0.1 |
0.1 |
| C0E |
C0D |
H4 |
O0B |
240.1 |
240.0 |
| C0E |
C0D |
H4 |
H5 |
120.0 |
120.0 |
| O0B |
C0D |
H4 |
H5 |
240.0 |
240.0 |
| C0E |
C0D |
H5 |
O0B |
119.9 |
120.0 |
| C0E |
C0D |
H5 |
H4 |
240.0 |
240.0 |
| O0B |
C0D |
H5 |
H4 |
120.0 |
120.0 |
| H6 |
C0E |
N0H |
C0K |
173.0 |
330.0 |
| H6 |
C0E |
C0D |
O0B |
51.0 |
185.0 |
| H6 |
C0E |
C0D |
H4 |
171.0 |
305.0 |
| H6 |
C0E |
C0D |
H5 |
291.0 |
65.0 |
| H6 |
C0E |
N0H |
C0P |
353.0 |
150.0 |
| N0H |
C0E |
H6 |
H7 |
241.7 |
240.0 |
| H7 |
C0E |
N0H |
C0K |
54.1 |
210.0 |
| H7 |
C0E |
C0D |
O0B |
169.9 |
305.0 |
| H7 |
C0E |
C0D |
H4 |
289.9 |
65.0 |
| H7 |
C0E |
C0D |
H5 |
49.9 |
185.0 |
| H7 |
C0E |
N0H |
C0P |
234.1 |
30.0 |
| N0H |
C0E |
H7 |
H6 |
118.4 |
120.0 |
| H8 |
C0O |
C0N |
O0S |
0.0 |
360.0 |
| H9 |
C0P |
C0O |
H8 |
359.9 |
360.0 |
| C0Y |
C0X |
H10 |
N0W |
180.0 |
180.0 |
| H10 |
C0X |
N0W |
C11 |
359.9 |
359.9 |
| H12 |
C10 |
C0V |
N0W |
180.0 |
180.0 |
| C0V |
C10 |
H12 |
C14 |
180.0 |
180.0 |
| H12 |
C10 |
C14 |
C11 |
180.0 |
180.0 |
| C0K |
N0M |
H14 |
C0N |
180.0 |
180.0 |
| H14 |
N0M |
C0N |
O0S |
0.0 |
0.0 |