PDB Chemical Component H8D

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for H8D

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C8	N1	1.348	1.387
C8	C7	1.333	1.329
N1	C1	1.343	1.363
C15	C7	1.382	1.506
C15	C11	1.525	1.535
C7	C3	1.307	1.458
C12	N2	1.407	1.468
C1	C3	1.325	1.397
C1	C4	1.335	1.395
C3	C6	1.325	1.412
C11	N2	1.471	1.457
C11	C9	1.398	1.506
N2	C13	1.462	1.467
C4	C5	1.397	1.390
C6	C9	1.398	1.476
C6	C2	1.395	1.376
C9	C10	1.401	1.321
C13	C14	1.519	1.533
C5	C2	1.405	1.393
C10	C14	1.397	1.505
C14	C16	1.521	1.507
C16	N3	1.376	1.347
C16	O1	1.355	1.214
N3	C19	1.438	1.466
C21	C20	1.527	1.530
C20	C19	1.514	1.530
C19	C22	1.507	1.530
C22	O2	1.413	1.429
C4	H1	1.080	1.079
C14	H2	1.100	1.090
C5	H3	1.080	1.080
C11	H4	1.100	1.090
C8	H5	1.080	1.080
C10	H7	1.080	1.080
C12	H9	1.100	1.090
C12	H10	1.100	1.091
C12	H11	1.100	1.090
C13	H12	1.100	1.090
C13	H13	1.101	1.089
N1	H14	1.000	0.970
N3	H16	1.000	0.970
C15	H17	1.101	1.091
C15	H18	1.100	1.090
C19	H19	1.100	1.090
C2	H20	1.080	1.080
C20	H21	1.100	1.090
C20	H22	1.100	1.089
C21	H23	1.100	1.090
C21	H24	1.100	1.090
C21	H25	1.100	1.089
C22	H26	1.100	1.090
C22	H27	1.100	1.089
O2	H28	0.950	0.967

Bond Angles for H8D

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C8	N1	C1	110.0	110.4
N1	C8	H5	125.4	124.9
C8	N1	H14	125.0	124.8
C8	C7	C3	102.5	105.1
N1	C1	C3	101.1	105.3
C1	N1	H14	125.0	124.8
C15	C11	H4	108.4	106.5
C11	N2	C12	109.4	111.0
C12	N2	C13	109.1	111.0
N2	C12	H9	109.5	109.4
N2	C12	H10	109.4	109.5
N2	C12	H11	109.5	109.5
C1	C4	H1	120.4	121.3
C3	C6	C2	117.4	115.6
C9	C11	N2	109.4	112.9
C11	N2	C13	107.6	113.0
N2	C11	H4	109.1	106.9
C6	C9	C11	107.5	117.8
C11	C9	C10	120.7	123.1
C9	C11	H4	110.2	107.0
N2	C13	H12	108.8	109.7
N2	C13	H13	108.8	109.7
C4	C5	C2	119.3	124.3
C5	C4	H1	120.4	121.3
C4	C5	H3	120.3	117.8
C9	C6	C2	116.8	130.2
C6	C9	C10	125.5	119.1
C5	C2	C6	118.7	119.8
C6	C2	H20	120.7	120.1
C9	C10	H7	117.8	119.2
C13	C14	C16	111.2	109.7
C13	C14	H2	106.7	109.7
C2	C5	H3	120.3	117.8
C5	C2	H20	120.6	120.1
C10	C14	C16	118.6	109.7
C10	C14	H2	108.2	109.7
C14	C16	N3	116.7	120.0
C14	C16	O1	120.8	120.0
C16	C14	H2	106.6	109.7
C16	N3	C19	119.8	120.0
C16	N3	H16	120.1	120.0
N3	C19	C22	110.1	109.5
C19	N3	H16	120.1	119.9
N3	C19	H19	109.5	109.4
C21	C20	H21	109.3	109.4
C21	C20	H22	109.4	109.5
C20	C19	C22	108.7	109.5
C20	C19	H19	108.5	109.5
C19	C22	O2	109.1	109.5
C22	C19	H19	108.6	109.4
C19	C22	H26	109.5	109.5
C19	C22	H27	109.6	109.5
O2	C22	H26	109.6	109.5
O2	C22	H27	109.6	109.5
C22	O2	H28	109.5	114.1
H9	C12	H10	109.5	109.4
H9	C12	H11	109.4	109.5
H10	C12	H11	109.5	109.5
H12	C13	H13	109.5	109.7
H17	C15	H18	109.5	109.5
H21	C20	H22	109.5	109.5
H23	C21	H24	109.5	109.5
H23	C21	H25	109.5	109.5
H24	C21	H25	109.5	109.5
H26	C22	H27	109.5	109.5

Torsion Angles for H8D

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N1	C8	C7	C3	0.0	359.9
C8	N1	C1	C3	0.0	359.8
C1	N1	C8	H14	180.0	179.9
C1	N1	C8	H5	180.0	180.0
C8	N1	C1	H14	180.0	180.1
N1	C1	C4	H1	360.0	0.3
C7	C15	C11	H4	68.1	68.8
N2	C11	C15	H4	117.9	115.3
C9	C11	C15	H4	238.2	242.5
N1	C1	C3	C7	0.0	0.2
C7	C3	C6	C2	179.9	179.9
C9	C11	N2	C12	173.5	163.2
C11	N2	C12	C13	242.6	233.5
C12	N2	C11	H4	52.9	45.8
C12	N2	C13	H12	292.8	50.1
C12	N2	C13	H13	52.0	289.5
H9	C12	N2	H10	240.0	240.1
H9	C12	N2	H11	120.0	120.0
H10	C12	N2	H11	240.0	240.0
C3	C1	N1	H14	180.0	179.7
C3	C1	C4	H1	179.9	180.1
C1	C3	C6	C2	359.9	0.0
C1	C4	C5	C2	0.0	0.1
C5	C4	C1	H1	180.0	179.7
C1	C4	C5	H3	180.0	180.1
C9	C6	C3	C2	179.9	179.4
C5	C2	C6	C3	0.1	359.9
C3	C6	C2	H20	180.1	179.9
C15	C11	N2	H4	242.5	245.0
C12	N2	C11	C13	118.4	125.4
C11	N2	C12	H9	180.0	60.0
C11	N2	C12	H10	300.0	180.0
C11	N2	C12	H11	60.0	300.0
C6	C9	C11	N2	172.7	175.4
N2	C11	C9	C10	326.0	355.2
C9	C11	N2	H4	120.6	117.4
C11	N2	C13	H12	51.3	175.5
C11	N2	C13	H13	170.5	55.0
C15	C11	C9	H4	120.7	117.1
C9	C11	N2	C13	55.2	37.8
N2	C11	C9	H4	240.0	242.6
C11	C9	C6	C2	151.8	156.1
C6	C9	C11	C10	206.6	180.2
C11	C9	C10	H7	203.9	180.0
C11	N2	C13	C12	118.6	125.4
C13	N2	C12	H9	297.4	186.6
C13	N2	C12	H10	57.4	306.5
C13	N2	C12	H11	177.5	66.5
C13	N2	C11	H4	294.6	280.4
N2	C13	C14	C16	182.6	175.9
N2	C13	C14	H2	298.5	296.4
H12	C13	N2	H13	240.8	120.6
C1	C4	C5	H1	180.0	180.3
C4	C5	C2	C6	360.0	0.1
C2	C5	C4	H3	180.0	180.0
C4	C5	C2	H20	179.9	180.1
C3	C6	C9	C2	180.1	180.7
C11	C9	C6	C10	151.8	179.8
C6	C9	C11	H4	292.6	292.8
C5	C2	C6	C9	180.2	180.6
C9	C6	C2	H20	0.2	0.6
C6	C9	C10	H7	352.3	359.7
C2	C6	C9	C11	151.8	156.1
C2	C6	C9	C10	0.1	336.3
C6	C2	C5	H3	179.9	180.1
C5	C2	C6	H20	180.0	180.0
C10	C9	C11	N2	326.0	355.2
C6	C9	C10	C11	148.4	179.8
C10	C9	C11	H4	86.0	112.5
C10	C9	C6	C2	0.1	336.3
C9	C10	C14	C16	204.6	214.5
C9	C10	C14	H2	83.1	94.0
C10	C14	C13	C16	230.6	240.3
C10	C14	C13	H2	114.7	119.8
C13	C14	C16	N3	87.3	180.6
C13	C14	C16	O1	268.3	0.5
C16	C14	C13	H2	244.1	239.5
C3	C6	C2	C5	0.1	359.9
C2	C5	C4	H1	180.1	179.8
C4	C5	C2	H3	180.0	180.0
C9	C6	C2	C5	180.2	180.6
C6	C2	C5	H20	180.0	180.0
C13	C14	C10	C16	124.9	119.7
C13	C14	C10	H2	246.3	240.2
C10	C14	C16	N3	209.1	299.5
C10	C14	C16	O1	30.1	119.5
C16	C14	C10	H2	121.5	120.5
C13	C14	C16	H2	115.9	120.5
C10	C14	C16	H2	237.8	239.5
C14	C16	N3	C19	173.2	180.0
C14	C16	N3	H16	353.2	0.0
C14	C16	N3	O1	181.0	180.0
N3	C16	C14	H2	331.4	60.0
C16	N3	C19	C22	243.1	275.0
C19	N3	C16	H16	180.0	180.0
C16	N3	C19	H19	2.4	35.0
C14	C16	O1	N3	179.0	180.0
O1	C16	C14	H2	152.3	240.0
O1	C16	N3	C19	352.2	0.0
O1	C16	N3	H16	172.2	180.0
C16	N3	C19	H16	180.0	180.0
C20	C19	N3	C22	239.3	240.0
C20	C19	N3	H19	120.0	120.0
N3	C19	C22	O2	76.9	295.0
C22	C19	N3	H19	240.6	240.0
N3	C19	C22	H26	196.9	55.0
N3	C19	C22	H27	317.0	175.0
C21	C20	C19	C22	161.4	175.0
C21	C20	C19	H19	43.5	55.0
H21	C20	C21	H22	240.1	120.0
N3	C19	C20	C22	121.5	120.0
C20	C19	N3	H16	302.4	334.9
N3	C19	C20	H19	239.4	240.0
C20	C19	C22	O2	199.1	55.0
C22	C19	C20	H19	117.9	120.0
C20	C19	C22	H26	319.0	175.0
C20	C19	C22	H27	79.1	295.0
C22	C19	N3	H16	63.1	95.0
N3	C19	C22	H19	119.9	120.0
C20	C19	C22	H19	242.1	240.0
O2	C22	C19	H26	240.0	240.0
O2	C22	C19	H27	120.0	120.0
C19	C22	O2	H28	180.0	180.0
H26	C22	C19	H27	239.9	240.0
O2	C22	C19	H19	317.0	175.0
C19	C22	O2	H26	119.9	120.0
C19	C22	O2	H27	240.0	240.0
H26	C22	O2	H27	120.1	120.0
H1	C4	C5	C2	180.1	179.8
H1	C4	C5	H3	0.1	359.8
C13	C14	H2	C16	241.1	239.5
C10	C14	H2	C16	128.6	120.5
H2	C14	C16	N3	331.4	60.0
H2	C14	C16	O1	152.3	240.0
C4	C5	H3	C2	180.0	180.0
H3	C5	C4	H1	0.1	359.8
H3	C5	C2	C6	179.9	180.1
H3	C5	C2	H20	359.9	0.1
H4	C11	N2	C12	52.9	45.8
C9	C11	H4	N2	239.9	238.8
H4	C11	N2	C13	294.6	280.4
H4	C11	C9	C10	86.0	112.5
H5	C8	N1	C1	180.0	180.0
H5	C8	N1	H14	0.0	0.0
H5	C8	C7	C3	180.0	180.1
H7	C10	C14	C16	24.6	34.6
H7	C10	C14	H2	263.1	274.0
H9	C12	N2	C13	297.4	186.6
N2	C12	H9	H10	120.0	120.0
N2	C12	H9	H11	240.0	240.0
H10	C12	H9	H11	120.0	120.0
H10	C12	N2	C13	57.4	306.5
N2	C12	H10	H9	240.0	240.1
N2	C12	H10	H11	120.0	120.0
H9	C12	H10	H11	240.0	240.0
H11	C12	N2	C13	177.5	66.5
N2	C12	H11	H9	120.0	120.0
N2	C12	H11	H10	240.0	240.0
H9	C12	H11	H10	120.0	120.0
N2	C13	H12	H13	118.8	239.4
H12	C13	C14	C16	62.2	295.6
H12	C13	C14	H2	178.1	56.2
N2	C13	H13	H12	241.2	120.6
H13	C13	C14	C16	303.0	56.2
H13	C13	C14	H2	58.9	176.7
C8	N1	H14	C1	180.0	179.9
H14	N1	C8	H5	0.0	0.0
H14	N1	C1	C3	180.0	179.7
C16	N3	H16	C19	180.0	180.0
H16	N3	C19	C22	63.1	95.0
H16	N3	C19	H19	182.4	215.0
H17	C15	C11	H4	308.3	189.3
H18	C15	C11	H4	187.9	309.5
N3	C19	H19	C22	239.7	240.0
H19	C19	N3	H16	182.4	215.0
C20	C19	H19	C22	118.0	120.0
H19	C19	C22	O2	317.0	175.0
H19	C19	C22	H26	76.9	295.0
H19	C19	C22	H27	197.0	55.0
C5	C2	H20	C6	180.0	180.0
H20	C2	C5	H3	359.9	0.1
C21	C20	H21	H22	119.8	240.0
H21	C20	C19	C22	41.4	295.0
H21	C20	C19	H19	283.4	175.0
C21	C20	H22	H21	240.2	119.9
H22	C20	C19	C22	281.5	55.0
H22	C20	C19	H19	163.6	295.0
H23	C21	C20	H21	300.1	180.0
H23	C21	C20	H22	59.9	60.0
H24	C21	H23	H25	120.0	120.1
H24	C21	C20	H21	60.1	300.0
H24	C21	C20	H22	179.9	180.0
H23	C21	H24	H25	240.0	239.9
H25	C21	C20	H21	180.1	60.0
H25	C21	C20	H22	299.9	300.0
H23	C21	H25	H24	120.0	120.1
C19	C22	H26	O2	240.3	240.0
H26	C22	C19	H19	76.9	295.0
C19	C22	H26	H27	120.1	120.0
O2	C22	H26	H27	239.8	240.0
H26	C22	O2	H28	60.1	60.0
C19	C22	H27	O2	119.7	120.0
H27	C22	C19	H19	197.0	55.0
C19	C22	H27	H26	239.9	240.0
O2	C22	H27	H26	120.2	120.0
H27	C22	O2	H28	300.0	300.0
H28	O2	C22	H26	60.1	60.0
H28	O2	C22	H27	300.0	300.0