Atom Nomenclature for H86

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for H86

Atom Name (V3) Atom Name (V2)
CAA CAA
CAP CAP
CAQ CAQ
CAR CAR
CAS CAS
CAT CAT
CAU CAU
CAV CAV
CAW CAW
CAX CAX
OAZ OAZ
CBC CBC
CAM CAM
CAN CAN
NBG NBG
CAY CAY
CBF CBF
PBI PBI
OAF OAF
OAG OAG
OAC OAC
PBH PBH
OAD OAD
OAE OAE
OAB OAB
CAO CAO
CBE CBE
CBD CBD
CAK CAK
CBA CBA
FAH FAH
CAJ CAJ
CBB CBB
FAI FAI
CAL CAL
HAA1 1HAA
HAA2 2HAA
HAA3 3HAA
HAP1 1HAP
HAP2 2HAP
HAQ1 1HAQ
HAQ2 2HAQ
HAR1 1HAR
HAR2 2HAR
HAS1 1HAS
HAS2 2HAS
HAT1 1HAT
HAT2 2HAT
HAU1 1HAU
HAU2 2HAU
HAV1 1HAV
HAV2 2HAV
HAW1 1HAW
HAW2 2HAW
HAX1 1HAX
HAX2 2HAX
HAM HAM
HAN HAN
HAY1 1HAY
HAY2 2HAY
HBF HBF
HOAG HOAG
HOAC HOAC
HOAD HOAD
HOAE HOAE
HAO HAO
HAK HAK
HAJ HAJ
HAL HAL