Atom Nomenclature for H6P

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for H6P

Atom Name (V3) Atom Name (V2)
P13 P13
O14 O14
O15 O15
O16 O16
P17 P17
O18 O18
O19 O19
O20 O20
C21 C21
C27 C27
C28 C28
O29 O29
C30 C30
C31 C31
O33 O33
HO15 HO15
HO18 HO18
HO20 HO20
H21 H21
H21A H21A
H21B H21B
H27 H27
H28 H28
H28A H28A
H31 H31
H31A H31A
HO33 HO33