Atom Nomenclature for H67

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for H67

Atom Name (V3) Atom Name (V2)
C10 C1
C13 C2
C15 C3
C20 C4
C21 C5
C22 C6
C24 C7
C26 C8
C28 C9
C02 C10
C03 C11
C04 C12
C05 C13
C07 C14
C11 C15
C12 C16
C16 C17
C18 C18
C19 C19
C23 C20
C25 C21
C27 C22
C29 C23
C30 C24
C31 C25
C32 C26
C33 C27
C34 C28
C35 C29
C36 C30
N06 N1
N08 N2
N09 N3
N17 N4
O01 O1
O14 O2
O37 O3
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H33 H33