Atom Nomenclature for H64

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for H64

Atom Name (V3) Atom Name (V2)
C97 C97
C95 C95
C96 C96
N94 N94
C93 C93
C92 C92
C91 C91
N9 N9
C4 C4
N3 N3
C2 C2
N1 N1
C6 C6
N6 N6
C5 C5
N7 N7
C8 C8
S S
C1' C1'
C6' C6'
C5' C5'
O3' O3'
C'2 C'2
O1' O1'
C4' C4'
C3' C3'
C2' C2'
BR BR
H971 1H97
H972 2H97
H973 3H97
H95 H95
H961 1H96
H962 2H96
H963 3H96
H94 H94
H931 1H93
H932 2H93
H921 1H92
H922 2H92
H911 1H91
H912 2H91
H2 H2
HN61 1HN6
HN62 2HN6
H6' H6'
H'21 1H'2
H'22 2H'2
H3' H3'