PDB Chemical Component H5Z

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for H5Z

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C01	C02	1.542	1.506
C02	C03	1.406	1.383
C02	C05	1.400	1.383
C03	C04	1.396	1.381
C05	C06	1.401	1.382
C04	C07	1.374	1.390
C06	C07	1.386	1.390
C07	S08	1.793	1.762
O34	C33	1.397	1.429
N32	N31	1.255	1.286
N32	N17	1.360	1.286
N31	C19	1.404	1.345
F22	C21	1.328	1.351
C09	S08	1.808	1.814
C09	C33	1.544	1.531
C09	O10	1.391	1.429
C16	C33	1.540	1.532
C16	N17	1.437	1.466
C16	C14	1.542	1.532
N17	C18	1.375	1.353
C11	O10	1.414	1.429
C11	C14	1.548	1.531
C11	C12	1.532	1.530
C19	C18	1.385	1.364
C19	C20	1.454	1.485
C21	C20	1.416	1.395
C21	C23	1.372	1.384
F24	C23	1.325	1.350
C14	O15	1.390	1.429
O13	C12	1.398	1.428
C20	C29	1.408	1.394
C23	C25	1.383	1.387
C29	F30	1.325	1.351
C29	C27	1.378	1.384
C25	C27	1.378	1.386
C25	F26	1.270	1.351
C27	F28	1.318	1.351
C01	H012	1.100	1.091
C01	H011	1.101	1.090
C01	H013	1.100	1.089
C03	H031	1.080	1.080
C04	H041	1.080	1.081
C05	H051	1.080	1.079
C06	H061	1.080	1.080
C09	H091	1.100	1.090
C11	H111	1.100	1.090
C12	H122	1.100	1.090
C12	H121	1.100	1.089
C14	H141	1.100	1.090
C16	H161	1.100	1.089
C18	H181	1.080	1.080
C33	H331	1.100	1.089
O13	H131	0.950	0.967
O15	H151	0.950	0.967
O34	H341	0.951	0.967

Bond Angles for H5Z

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C01	C02	C03	123.8	119.9
C01	C02	C05	123.5	119.9
C02	C01	H012	109.5	109.4
C02	C01	H011	109.5	109.5
C02	C01	H013	109.5	109.5
C03	C02	C05	112.8	120.2
C02	C03	C04	124.1	120.1
C02	C03	H031	118.0	120.0
C02	C05	C06	123.4	120.1
C02	C05	H051	118.3	120.0
C03	C04	C07	121.7	120.0
C04	C03	H031	118.0	119.9
C03	C04	H041	119.1	120.0
C05	C06	C07	122.0	119.9
C06	C05	H051	118.3	120.0
C05	C06	H061	119.0	120.0
C04	C07	C06	116.1	119.8
C04	C07	S08	122.9	120.1
C07	C04	H041	119.1	120.0
C06	C07	S08	121.0	120.1
C07	C06	H061	119.0	120.0
C07	S08	C09	104.5	103.0
O34	C33	H331	113.7	109.6
C33	C09	S08	110.2	109.5
O10	C09	S08	109.9	109.5
S08	C09	H091	105.8	109.5
C33	C09	O10	111.4	109.4
C09	C33	C16	102.7	109.1
C33	C09	H091	108.6	109.5
C09	C33	H331	111.3	109.5
C09	O10	C11	111.3	114.1
O10	C09	H091	110.7	109.5
C33	C16	N17	110.0	109.5
C33	C16	H161	107.8	109.6
C16	C33	H331	111.4	109.6
C16	N17	C18	129.4	125.8
N17	C16	H161	109.1	109.5
C16	C14	O15	111.1	109.5
C16	C14	H141	109.1	109.5
N17	C18	H181	127.6	127.0
C14	C11	O10	108.5	109.4
C12	C11	O10	108.6	109.4
O10	C11	H111	110.5	109.6
C12	C11	C14	111.5	109.5
C11	C14	O15	110.7	109.6
C14	C11	H111	108.7	109.5
C11	C14	H141	109.0	109.5
C12	C11	H111	108.9	109.5
C11	C12	H122	109.1	109.4
C11	C12	H121	109.2	109.5
C19	C18	H181	127.5	127.0
C19	C20	C29	122.1	120.1
C21	C20	C29	113.4	119.8
C21	C23	C25	119.4	120.1
O15	C14	H141	111.2	109.5
C14	O15	H151	109.5	114.0
O13	C12	H122	109.1	109.5
O13	C12	H121	109.1	109.5
C20	C29	F30	118.0	120.1
C20	C29	C27	123.3	119.9
C23	C25	C27	119.3	120.2
C23	C25	F26	121.0	119.9
C29	C27	F28	120.3	119.9
C27	C25	F26	119.8	119.9
C25	C27	F28	119.3	120.0
H012	C01	H011	109.5	109.4
H012	C01	H013	109.4	109.5
H011	C01	H013	109.5	109.5
H122	C12	H121	109.5	109.5

Torsion Angles for H5Z

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C03	C02	C01	C05	181.1	180.4
C01	C02	C03	C04	179.3	180.0
C01	C02	C03	H031	359.3	359.9
C01	C02	C05	C06	180.9	180.0
C01	C02	C05	H051	0.9	0.1
H012	C01	C02	H011	240.0	240.1
H012	C01	C02	H013	120.0	120.0
H011	C01	C02	H013	240.0	239.9
C01	C02	C03	C05	179.0	179.6
C03	C02	C01	H012	90.5	90.1
C03	C02	C01	H011	210.6	210.0
C03	C02	C01	H013	330.5	330.1
C03	C02	C05	C06	359.9	359.7
C03	C02	C05	H051	179.9	179.7
C02	C03	C04	C07	359.6	359.9
C04	C03	C02	H031	180.0	180.1
C02	C03	C04	H041	179.6	180.0
C01	C02	C05	C03	181.0	180.4
C05	C02	C01	H012	269.4	269.7
C05	C02	C01	H011	29.5	29.6
C05	C02	C01	H013	149.5	149.7
C05	C02	C03	C04	0.3	0.4
C05	C02	C03	H031	180.3	180.2
C02	C05	C06	C07	0.0	360.0
C06	C05	C02	H051	180.0	180.0
C02	C05	C06	H061	180.1	180.0
C04	C03	C02	C05	0.3	0.4
C02	C03	C04	H031	180.0	179.9
C03	C04	C07	C06	0.3	359.8
C03	C04	C07	S08	181.1	180.0
C07	C04	C03	H041	180.0	179.9
C02	C05	C06	H051	180.0	180.0
C04	C07	C06	C05	359.9	0.3
C05	C06	C07	S08	179.1	180.0
C07	C06	C05	H061	180.0	180.0
C07	C04	C03	H031	179.6	180.0
C03	C04	C07	H041	180.0	180.1
C05	C06	C07	C04	359.9	0.3
C06	C07	C04	S08	179.2	179.8
C04	C07	C06	H061	179.8	180.3
C04	C07	S08	C09	202.8	180.0
C07	C06	C05	H051	180.0	180.0
C05	C06	C07	H061	180.0	180.0
C04	C07	C06	S08	180.8	180.2
C06	C07	C04	H041	180.3	179.7
C06	C07	S08	C09	23.6	0.2
C04	C07	S08	C06	179.2	179.8
S08	C07	C04	H041	1.1	359.9
S08	C07	C06	H061	359.1	0.0
C33	C09	S08	C07	146.5	175.0
O10	C09	S08	C07	269.7	295.0
C07	S08	C09	H091	29.2	55.0
O34	C33	C09	S08	297.3	297.5
O34	C33	C09	H091	52.8	57.5
C09	C33	O34	H331	125.7	120.2
O34	C33	C16	H161	303.8	303.1
C16	C33	O34	H331	236.6	239.8
N32	N17	C16	H161	0.2	335.2
N32	N17	C18	H181	180.1	180.0
N31	C19	C18	H181	180.0	180.0
C33	C09	S08	O10	236.8	240.1
S08	C09	C33	C16	183.6	177.6
C33	C09	S08	H091	117.3	120.0
S08	C09	C33	H331	64.3	57.7
S08	C09	O10	C11	168.9	178.9
O10	C09	S08	H091	240.4	239.9
C07	S08	C09	C33	146.5	175.0
O34	C33	C09	H331	233.0	239.8
O10	C09	C33	S08	237.7	240.0
S08	C09	C33	H091	244.5	240.0
C33	C09	O10	C11	291.3	298.8
O10	C09	C33	H091	122.2	120.0
C09	C33	C16	N17	178.6	183.2
C09	C33	C16	H161	59.7	63.0
C16	C33	C09	H331	119.3	119.9
C07	S08	C09	O10	269.7	295.0
C33	C09	O10	S08	122.5	120.0
S08	C09	O10	H091	116.5	120.1
O10	C09	C33	C16	61.3	57.6
C33	C09	O10	H091	239.0	240.0
O10	C09	C33	H331	302.1	297.7
C14	C11	O10	C09	66.0	61.2
C12	C11	O10	C09	187.3	181.1
C09	O10	C11	H111	306.8	301.2
O34	C33	C16	H331	124.8	120.3
C16	C33	C09	S08	183.6	177.6
C16	C33	C09	O10	61.3	57.6
C16	C33	C09	H091	299.1	297.7
C09	C33	C16	H331	240.8	240.1
C33	C16	N17	C18	62.3	34.9
N17	C16	C33	H161	118.8	120.2
C33	C16	C14	O15	299.5	297.1
C33	C16	C14	H141	176.5	176.9
C33	C16	N17	H161	242.0	239.8
N17	C16	C33	H331	297.8	303.1
N17	C16	C14	O15	62.2	56.9
N17	C16	C14	H141	299.2	296.8
C16	N17	C18	H181	0.0	0.0
C09	C33	C16	C14	301.4	303.0
C16	C14	C11	O10	300.7	302.3
C11	C14	C16	O15	120.1	120.0
C16	C14	C11	H111	61.0	62.4
C11	C14	C16	H141	243.1	240.1
O15	C14	C16	H141	123.0	120.2
C16	C14	O15	H151	180.0	179.7
C18	N17	C16	H161	180.3	155.2
C19	C18	N17	H181	180.0	179.7
C11	O10	C09	S08	168.9	178.9
C11	O10	C09	H091	52.4	58.8
C12	C11	O10	C14	121.3	119.9
O10	C11	C14	O15	61.0	62.3
C14	C11	O10	H111	119.2	120.0
O10	C11	C14	H141	183.7	182.4
C12	C11	O10	H111	240.5	239.9
O10	C11	C12	H122	183.8	185.0
O10	C11	C12	H121	303.4	305.0
C09	O10	C11	C14	66.0	61.2
C16	C14	C11	O15	239.7	240.1
C16	C14	C11	H141	117.0	119.9
C12	C11	C14	O10	240.4	240.1
O10	C11	C14	H111	239.7	239.9
C12	C11	C14	H111	120.1	120.0
C14	C11	C12	H122	303.4	304.9
C14	C11	C12	H121	62.9	64.9
O15	C14	C11	H141	237.3	239.8
C11	C14	O15	H151	63.0	60.0
C09	O10	C11	C12	187.3	181.1
C14	C11	C12	O10	119.5	119.9
O10	C11	C12	H111	120.5	120.1
C12	C11	C14	O15	301.4	302.3
C14	C11	C12	H111	240.0	240.0
C12	C11	C14	H141	64.1	62.5
O13	C12	C11	H122	239.8	240.0
O13	C12	C11	H121	120.2	120.1
H122	C12	C11	H121	240.4	240.0
C16	N17	C18	C19	180.0	179.8
N17	C18	C19	H181	180.0	180.3
C18	C19	C20	C29	29.9	180.0
C21	C20	C19	C29	176.0	179.7
C19	C20	C29	F30	359.0	359.7
C19	C20	C29	C27	177.8	179.7
C19	C20	C21	C29	183.7	180.3
C21	C20	C29	F30	182.6	180.0
C21	C20	C29	C27	1.4	360.0
C23	C21	C20	C29	358.0	359.9
C21	C23	C25	C27	359.8	359.9
C21	C23	C25	F26	180.2	179.9
F24	C23	C25	F26	0.2	0.0
C16	C14	O15	H141	238.3	239.8
O15	C14	C11	O10	61.0	62.3
O15	C14	C11	H111	181.3	182.3
C11	C14	O15	H141	121.4	120.2
O13	C12	C11	H111	303.1	305.0
C11	C12	O13	H122	120.2	119.9
C11	C12	O13	H121	239.8	240.0
H122	C12	O13	H121	119.6	120.0
C20	C29	C27	F28	178.6	180.0
C27	C25	C23	F26	179.7	180.0
C23	C25	C27	F28	180.7	180.0
C20	C29	F30	C27	178.9	180.0
F30	C29	C27	F28	357.4	0.0
C20	C29	C27	F30	181.2	180.0
C29	C27	C25	F26	179.3	180.0
C25	C27	C29	F28	181.1	180.0
C20	C29	C27	C25	359.7	0.1
C23	C25	C27	F26	180.3	180.0
C29	C27	C25	F28	178.9	180.0
C23	C25	F26	C27	179.7	180.0
F26	C25	C27	F28	0.4	0.0
F28	C27	C25	F26	0.4	0.0
H012	C01	C02	C03	90.5	90.1
H012	C01	C02	C05	269.4	269.7
C02	C01	H012	H011	120.0	120.0
C02	C01	H012	H013	240.0	240.0
H011	C01	H012	H013	120.0	120.0
H011	C01	C02	C03	210.6	210.0
H011	C01	C02	C05	29.5	29.6
C02	C01	H011	H012	240.0	240.0
C02	C01	H011	H013	120.0	120.1
H012	C01	H011	H013	240.0	240.0
H013	C01	C02	C03	330.5	330.1
H013	C01	C02	C05	149.5	149.7
C02	C01	H013	H012	120.0	120.0
C02	C01	H013	H011	240.0	239.9
H012	C01	H013	H011	120.0	119.9
H031	C03	C02	C05	180.3	180.2
C02	C03	H031	C04	180.0	180.1
H031	C03	C04	C07	179.6	180.0
H031	C03	C04	H041	359.5	0.1
C03	C04	H041	C07	180.0	179.9
H041	C04	C03	H031	359.5	0.1
H041	C04	C07	C06	180.3	179.7
H041	C04	C07	S08	1.1	359.9
C02	C05	H051	C06	180.0	180.0
H051	C05	C06	C07	180.0	180.0
H051	C05	C06	H061	0.1	360.0
C05	C06	H061	C07	180.0	180.0
H061	C06	C05	H051	0.1	360.0
H061	C06	C07	S08	359.1	0.0
C33	C09	H091	S08	241.7	240.0
O10	C09	H091	S08	119.0	120.1
C33	C09	H091	O10	122.7	119.9
H091	C09	C33	C16	299.1	297.7
H091	C09	C33	H331	179.8	177.7
H091	C09	O10	C11	52.4	58.8
C14	C11	H111	O10	240.9	240.0
C12	C11	H111	O10	119.3	120.0
C12	C11	H111	C14	238.4	240.0
H111	C11	C14	O15	181.3	182.3
H111	C11	C14	H141	304.0	302.5
H111	C11	C12	H122	63.3	64.9
H111	C11	C12	H121	182.9	184.9
H122	C12	C11	O10	183.8	185.0
H122	C12	C11	C14	303.4	304.9
H122	C12	C11	H111	63.3	64.9
C11	C12	H122	H121	119.4	120.0
O13	C12	H122	H121	240.7	240.0
H121	C12	C11	O10	303.4	305.0
H121	C12	C11	C14	62.9	64.9
H121	C12	C11	H111	182.9	184.9
C11	C12	H121	H122	240.6	240.0
O13	C12	H121	H122	119.4	120.0
C16	C14	H141	O15	122.9	120.2
H141	C14	C11	O10	183.7	182.4
C11	C14	H141	O15	237.6	239.8
H141	C14	C11	H111	304.0	302.5
H141	C14	O15	H151	301.7	299.8
C33	C16	H161	N17	119.4	120.2
H161	C16	C33	H331	178.9	182.9
H161	C16	N17	C18	180.3	155.2
H161	C16	C14	O15	181.1	177.1
H161	C16	C14	H141	58.2	57.0
H331	C33	C09	S08	64.3	57.7
H331	C33	C09	O10	302.1	297.7
C09	C33	H331	C16	113.9	119.7
H331	C33	C09	H091	179.8	177.7
H331	C33	C16	N17	297.8	303.1
H331	C33	C16	H161	178.9	182.9
H131	O13	C12	H122	59.8	60.0
H131	O13	C12	H121	300.2	300.0
H151	O15	C14	H141	301.7	299.8
H341	O34	C33	H331	54.3	299.9