PDB Chemical Component H5K
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for H5K
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C4 |
C3 |
1.363 |
1.357 |
| C4 |
C5 |
1.415 |
1.408 |
| C3 |
C2 |
1.398 |
1.408 |
| O2 |
C1 |
1.230 |
1.215 |
| O3 |
C8 |
1.227 |
1.215 |
| C2 |
C1 |
1.497 |
1.475 |
| C2 |
C17 |
1.378 |
1.386 |
| C6 |
C5 |
1.415 |
1.402 |
| C6 |
C7 |
1.379 |
1.380 |
| C5 |
C16 |
1.418 |
1.420 |
| C1 |
O1 |
1.308 |
1.348 |
| C8 |
N2 |
1.373 |
1.348 |
| C8 |
N1 |
1.379 |
1.347 |
| N2 |
C9 |
1.407 |
1.390 |
| C17 |
C16 |
1.416 |
1.402 |
| C7 |
N1 |
1.423 |
1.397 |
| C7 |
C14 |
1.393 |
1.400 |
| C16 |
C15 |
1.417 |
1.408 |
| C9 |
C10 |
1.403 |
1.396 |
| C9 |
N4 |
1.343 |
1.327 |
| C14 |
C15 |
1.364 |
1.358 |
| C10 |
N3 |
1.338 |
1.316 |
| N4 |
C12 |
1.341 |
1.319 |
| N3 |
C11 |
1.346 |
1.333 |
| C12 |
C11 |
1.422 |
1.396 |
| C11 |
C13 |
1.417 |
1.432 |
| C13 |
N5 |
1.138 |
1.136 |
| C10 |
H7 |
1.080 |
1.080 |
| C12 |
H8 |
1.080 |
1.080 |
| N2 |
H6 |
1.000 |
0.969 |
| N1 |
H5 |
1.000 |
0.970 |
| C6 |
H4 |
1.080 |
1.080 |
| C14 |
H9 |
1.080 |
1.080 |
| C15 |
H10 |
1.080 |
1.081 |
| C4 |
H3 |
1.080 |
1.080 |
| C3 |
H2 |
1.080 |
1.080 |
| C17 |
H11 |
1.080 |
1.080 |
| O1 |
H1 |
0.950 |
0.967 |
Bond Angles for H5K
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
C3 |
C2 |
121.0 |
120.8 |
| C3 |
C4 |
H3 |
119.4 |
119.9 |
| C4 |
C3 |
H2 |
119.5 |
119.6 |
| C3 |
C2 |
C1 |
119.7 |
119.8 |
| C3 |
C2 |
C17 |
119.3 |
120.5 |
| C2 |
C3 |
H2 |
119.5 |
119.6 |
| O2 |
C1 |
O1 |
122.7 |
120.0 |
| O3 |
C8 |
N1 |
123.5 |
120.0 |
| C2 |
C1 |
O1 |
115.9 |
120.0 |
| C2 |
C17 |
H11 |
119.3 |
120.3 |
| C6 |
C5 |
C16 |
118.9 |
119.4 |
| C5 |
C6 |
H4 |
119.6 |
120.2 |
| C6 |
C7 |
C14 |
119.6 |
120.7 |
| C1 |
O1 |
H1 |
109.5 |
117.0 |
| C8 |
N2 |
H6 |
113.9 |
120.0 |
| C8 |
N1 |
H5 |
116.3 |
120.0 |
| C7 |
N1 |
H5 |
116.3 |
120.0 |
| C7 |
C14 |
C15 |
121.1 |
120.9 |
| C7 |
C14 |
H9 |
119.4 |
119.6 |
| C16 |
C15 |
H10 |
119.5 |
120.0 |
| C9 |
C10 |
H7 |
119.1 |
119.9 |
| C15 |
C14 |
H9 |
119.5 |
119.6 |
| C14 |
C15 |
H10 |
119.5 |
120.1 |
| N4 |
C12 |
H8 |
119.7 |
120.0 |
Torsion Angles for H5K
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
C3 |
C2 |
C1 |
182.6 |
180.0 |
| C4 |
C3 |
C2 |
C17 |
0.0 |
359.9 |
| C2 |
C3 |
C4 |
H2 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
H4 |
359.7 |
360.0 |
| C2 |
C3 |
C4 |
H3 |
180.3 |
180.0 |
| C4 |
C3 |
C2 |
H2 |
180.0 |
180.0 |
| C3 |
C2 |
C1 |
O1 |
176.3 |
360.0 |
| C3 |
C2 |
C17 |
H11 |
179.2 |
180.3 |
| C2 |
C1 |
O2 |
O1 |
179.4 |
180.0 |
| O2 |
C1 |
O1 |
H1 |
0.0 |
0.0 |
| O3 |
C8 |
N2 |
H6 |
357.3 |
185.1 |
| O3 |
C8 |
N1 |
H5 |
195.3 |
184.5 |
| C3 |
C2 |
C1 |
C17 |
177.4 |
179.9 |
| C1 |
C2 |
C3 |
H2 |
2.6 |
0.0 |
| O2 |
C1 |
C2 |
O1 |
180.6 |
180.0 |
| C1 |
C2 |
C17 |
H11 |
356.6 |
0.2 |
| C2 |
C1 |
O1 |
H1 |
180.6 |
180.0 |
| C3 |
C2 |
C17 |
C1 |
182.6 |
180.1 |
| C17 |
C2 |
C3 |
H2 |
180.0 |
179.9 |
| C5 |
C6 |
C7 |
C14 |
0.1 |
0.3 |
| C6 |
C7 |
N1 |
H5 |
168.6 |
325.1 |
| C6 |
C7 |
C14 |
C15 |
359.1 |
359.7 |
| C6 |
C7 |
C14 |
H9 |
179.1 |
179.8 |
| C16 |
C5 |
C6 |
H4 |
181.0 |
180.0 |
| C5 |
C16 |
C15 |
H10 |
180.9 |
180.2 |
| N1 |
C8 |
N2 |
H6 |
175.4 |
5.0 |
| C7 |
N1 |
C8 |
H5 |
180.0 |
180.0 |
| N2 |
C9 |
C10 |
H7 |
2.0 |
0.1 |
| C17 |
C16 |
C15 |
H10 |
1.7 |
0.0 |
| C8 |
N1 |
C7 |
H5 |
180.0 |
180.0 |
| C14 |
C7 |
N1 |
H5 |
348.6 |
144.8 |
| C15 |
C14 |
C7 |
H9 |
180.0 |
180.0 |
| C7 |
C14 |
C15 |
H10 |
180.3 |
180.0 |
| C6 |
C5 |
C16 |
C15 |
358.5 |
359.8 |
| C16 |
C15 |
C14 |
H9 |
180.3 |
180.0 |
| C14 |
C15 |
C16 |
H10 |
180.0 |
180.0 |
| N4 |
C9 |
C10 |
H7 |
182.5 |
179.7 |
| C9 |
N4 |
C12 |
H8 |
178.8 |
180.0 |
| C7 |
C14 |
C15 |
H9 |
180.0 |
180.0 |
| C16 |
C15 |
C14 |
H10 |
180.0 |
180.0 |
| H4 |
C6 |
C5 |
C16 |
181.0 |
180.0 |
| H4 |
C6 |
C7 |
C14 |
180.2 |
180.3 |
| C7 |
C14 |
H9 |
C15 |
180.0 |
180.0 |
| H9 |
C14 |
C15 |
H10 |
0.3 |
360.0 |
| H10 |
C15 |
C14 |
H9 |
0.3 |
360.0 |
| H3 |
C4 |
C3 |
C2 |
180.3 |
180.0 |
| H3 |
C4 |
C3 |
H2 |
0.3 |
360.0 |
| C4 |
C3 |
H2 |
C2 |
180.0 |
180.0 |
| H2 |
C3 |
C4 |
H3 |
0.3 |
360.0 |
| H2 |
C3 |
C2 |
C1 |
2.6 |
0.0 |
| H2 |
C3 |
C2 |
C17 |
180.0 |
179.9 |