Atom Nomenclature for H59

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for H59

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
C8 C8
C9 C9
N10 N10
C11 C11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
C18 C18
N19 N19
S20 S20
C21 C21
O22 O22
O23 O23
N24 N24
S25 S25
C26 C26
O27 O27
O28 O28
O29 O29
O30 O30
C31 C31
F32 F32
C33 C33
C34 C34
C35 C35
C36 C36
C37 C37
C38 C38
H2 H2
H5 H5
H6 H6
H9 H9
H14 H14
H15 H15
H17 H17
HN19 HN19
H21 H21
HN24 HN24
H26 H26
H26A H26A
H26B H26B
HO29 HO29
H31 H31
H31A H31A
H33 H33
H33A H33A
H33B H33B
H35 H35
H35A H35A
H36 H36
H36A H36A
H36B H36B
H37 H37
H37A H37A
H37B H37B
H38 H38
H38A H38A
H38B H38B