PDB Chemical Component H52

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for H52

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O1	S5	1.488	1.420
S5	O2	1.468	1.421
S5	N21	1.713	1.655
S5	C5	1.784	1.760
N21	C22	1.522	1.447
N21	C27	1.487	1.479
C22	C2M	1.519	1.530
C22	C23	1.533	1.544
C22	H22	1.115	1.090
C2M	H2M1	1.115	1.091
C2M	H2M2	1.115	1.090
C2M	H2M3	1.115	1.090
C23	N24	1.516	1.410
C23	H231	1.115	1.090
C23	H232	1.115	1.089
N24	C25	1.520	1.458
N24	H24	1.020	1.009
C25	C26	1.540	1.512
C25	H251	1.115	1.090
C25	H252	1.115	1.090
C26	C27	1.523	1.542
C26	H261	1.115	1.091
C26	H262	1.115	1.090
C27	H271	1.115	1.089
C27	H272	1.115	1.089
C5	C10	1.472	1.401
C5	C6	1.379	1.363
C10	C4	1.454	1.406
C10	C9	1.427	1.419
C4	CM	1.498	1.507
C4	C3	1.378	1.361
CM	HM1	1.115	1.089
CM	HM2	1.115	1.090
CM	HM3	1.115	1.091
C9	C8	1.423	1.403
C9	C1	1.427	1.404
C8	C7	1.367	1.362
C8	H8	1.103	1.080
C7	C6	1.416	1.393
C7	H7	1.103	1.080
C6	H6	1.103	1.079
C1	N2	1.311	1.311
C1	H1	1.103	1.080
N2	C3	1.349	1.326
C3	H3	1.104	1.080

Bond Angles for H52

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	S5	O2	117.6	125.3
O1	S5	N21	114.2	105.8
O1	S5	C5	108.8	105.8
O2	S5	N21	104.1	105.7
O2	S5	C5	104.6	105.7
N21	S5	C5	106.6	107.4
S5	N21	C22	116.4	119.0
S5	N21	C27	122.5	118.9
S5	C5	C10	126.6	120.3
S5	C5	C6	112.7	120.3
C22	N21	C27	119.0	122.1
N21	C22	C2M	113.7	109.4
N21	C22	C23	116.5	110.0
N21	C22	H22	101.0	109.3
N21	C27	C26	112.3	110.6
N21	C27	H271	111.2	109.2
N21	C27	H272	111.2	109.2
C2M	C22	C23	109.5	109.3
C2M	C22	H22	109.4	109.4
C22	C2M	H2M1	110.7	109.5
C22	C2M	H2M2	113.7	109.5
C22	C2M	H2M3	110.7	109.5
C23	C22	H22	106.1	109.4
C22	C23	N24	108.0	110.7
C22	C23	H231	112.8	109.3
C22	C23	H232	112.8	109.2
H2M1	C2M	H2M2	110.6	109.4
H2M1	C2M	H2M3	99.6	109.4
H2M2	C2M	H2M3	110.7	109.5
N24	C23	H231	112.7	109.2
N24	C23	H232	112.7	109.2
C23	N24	C25	108.9	112.3
C23	N24	H24	112.4	106.7
H231	C23	H232	97.7	109.2
C25	N24	H24	112.4	106.7
N24	C25	C26	113.7	109.6
N24	C25	H251	110.7	109.5
N24	C25	H252	110.6	109.5
C26	C25	H251	110.6	109.5
C26	C25	H252	110.7	109.4
C25	C26	C27	111.4	109.1
C25	C26	H261	111.5	109.5
C25	C26	H262	111.5	109.6
H251	C25	H252	99.6	109.4
C27	C26	H261	111.5	109.5
C27	C26	H262	111.5	109.5
C26	C27	H271	111.2	109.2
C26	C27	H272	111.2	109.2
H261	C26	H262	98.9	109.5
H271	C27	H272	99.2	109.2
C10	C5	C6	120.5	119.5
C5	C10	C4	130.6	122.3
C5	C10	C9	116.3	119.6
C5	C6	C7	121.2	121.0
C5	C6	H6	118.0	119.5
C4	C10	C9	113.1	118.2
C10	C4	CM	127.2	120.6
C10	C4	C3	121.8	118.7
C10	C9	C8	121.0	119.3
C10	C9	C1	121.0	118.6
CM	C4	C3	111.0	120.7
C4	CM	HM1	106.0	109.5
C4	CM	HM2	127.1	109.5
C4	CM	HM3	106.0	109.5
C4	C3	N2	121.8	121.9
C4	C3	H3	120.2	119.1
HM1	CM	HM2	106.0	109.4
HM1	CM	HM3	103.4	109.5
HM2	CM	HM3	106.0	109.4
C8	C9	C1	118.0	122.1
C9	C8	C7	120.9	119.5
C9	C8	H8	121.6	120.3
C9	C1	N2	121.8	119.9
C9	C1	H1	123.4	120.1
C7	C8	H8	117.5	120.2
C8	C7	C6	120.0	121.1
C8	C7	H7	118.2	119.5
C6	C7	H7	121.8	119.4
C7	C6	H6	120.8	119.5
N2	C1	H1	114.7	120.0
C1	N2	C3	120.3	122.7
N2	C3	H3	118.0	119.0

Torsion Angles for H52

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O2	S5	O1	N21	122.5	236.9
O2	S5	O1	C5	241.4	123.1
N21	S5	O1	C5	118.9	246.2
O1	S5	N21	C22	138.7	203.3
O1	S5	N21	C27	335.1	23.4
O1	S5	C5	C10	280.5	56.9
O1	S5	C5	C6	105.6	237.3
O1	S5	O2	N21	232.4	123.1
O1	S5	O2	C5	120.8	236.9
N21	S5	O2	C5	248.3	113.8
O2	S5	N21	C22	9.1	338.0
O2	S5	N21	C27	205.5	158.1
O2	S5	C5	C10	47.0	282.1
O2	S5	C5	C6	232.1	102.5
O1	S5	N21	O2	129.6	225.2
O1	S5	N21	C5	239.9	112.7
O2	S5	N21	C5	110.2	247.4
N21	S5	C5	C10	156.9	169.6
N21	S5	C5	C6	342.0	349.9
C22	N21	S5	C27	163.6	179.9
S5	N21	C22	C2M	74.4	330.6
S5	N21	C22	C23	203.1	90.7
S5	N21	C22	H22	317.4	210.9
S5	N21	C27	C26	89.8	221.0
S5	N21	C27	H271	324.6	100.7
S5	N21	C27	H272	215.1	341.2
O1	S5	C5	O2	233.5	134.8
O1	S5	C5	N21	123.6	247.3
O2	S5	C5	N21	250.1	112.6
C5	S5	N21	C22	258.9	90.6
C5	S5	N21	C27	95.3	270.7
C10	C5	S5	C6	175.0	179.7
S5	C5	C10	C4	3.8	0.6
S5	C5	C10	C9	184.1	179.8
S5	C5	C6	C7	178.2	180.0
S5	C5	C6	H6	358.2	359.9
C22	N21	S5	C5	258.9	90.6
S5	N21	C22	C27	195.8	180.1
C22	N21	C27	C26	286.6	41.1
C22	N21	C27	H271	161.4	280.8
C22	N21	C27	H272	51.9	161.3
C2M	C22	N21	C23	231.3	239.9
C2M	C22	N21	H22	117.0	119.8
N21	C22	C2M	H2M1	54.7	199.2
N21	C22	C2M	H2M2	180.0	319.2
N21	C22	C2M	H2M3	305.3	79.2
C23	C22	N21	H22	245.7	239.9
N21	C22	C23	N24	66.5	72.0
N21	C22	C23	H231	301.2	192.3
N21	C22	C23	H232	191.7	311.7
C27	N21	S5	C5	95.3	270.7
S5	N21	C27	C22	163.2	179.9
C27	N21	C22	C2M	238.6	150.5
C27	N21	C22	C23	7.3	270.6
C27	N21	C22	H22	121.6	30.8
C25	C26	C27	N21	81.9	39.4
N21	C27	C26	H261	207.2	279.5
N21	C27	C26	H262	316.7	159.4
C26	C27	N21	H271	125.2	120.3
C26	C27	N21	H272	234.7	239.7
H271	C27	N21	H272	109.5	119.4
C2M	C22	N21	C27	238.6	150.5
N21	C22	C2M	C23	132.2	120.5
N21	C22	C2M	H22	248.0	240.3
C23	C22	C2M	H22	115.8	119.8
C2M	C22	C23	N24	197.2	192.1
C2M	C22	C23	H231	71.9	312.4
C2M	C22	C23	H232	322.4	71.8
H2M1	C2M	C22	H2M2	234.8	240.1
H2M1	C2M	C22	H2M3	109.5	120.0
H2M2	C2M	C22	H2M3	234.7	239.9
C23	C22	N21	C27	7.3	270.6
N21	C22	C23	C2M	229.3	239.9
N21	C22	C23	H22	111.4	120.1
C2M	C22	C23	H22	242.1	240.2
C23	C22	C2M	H2M1	282.6	78.7
C23	C22	C2M	H2M2	47.8	198.6
C23	C22	C2M	H2M3	173.1	318.7
N24	C23	C22	H231	125.3	239.7
N24	C23	C22	H232	234.7	120.3
C22	C23	N24	C25	266.0	295.3
C22	C23	N24	H24	140.7	178.7
H231	C23	C22	H232	109.5	240.6
H22	C22	N21	C27	121.6	30.8
N21	C22	H22	C2M	120.1	119.7
N21	C22	H22	C23	238.1	239.5
C2M	C22	H22	C23	118.0	119.7
H22	C22	C2M	H2M1	166.8	318.9
H22	C22	C2M	H2M2	292.0	78.9
H22	C22	C2M	H2M3	57.3	199.0
H22	C22	C23	N24	315.1	311.9
H22	C22	C23	H231	189.8	72.2
H22	C22	C23	H232	80.3	191.6
H2M1	C2M	C22	C23	282.6	78.7
H2M1	C2M	C22	H22	166.8	318.9
C22	C2M	H2M1	H2M2	126.9	120.0
C22	C2M	H2M1	H2M3	243.5	240.0
H2M2	C2M	H2M1	H2M3	116.5	120.0
H2M2	C2M	C22	C23	47.8	198.6
H2M2	C2M	C22	H22	292.0	78.9
C22	C2M	H2M2	H2M1	234.7	240.0
C22	C2M	H2M2	H2M3	125.3	120.1
H2M1	C2M	H2M2	H2M3	250.6	240.0
H2M3	C2M	C22	C23	173.1	318.7
H2M3	C2M	C22	H22	57.3	199.0
C22	C2M	H2M3	H2M1	116.6	120.0
C22	C2M	H2M3	H2M2	233.0	240.0
H2M1	C2M	H2M3	H2M2	116.5	120.0
N24	C23	C22	H22	315.1	311.9
C22	C23	N24	H231	234.7	120.3
C22	C23	N24	H232	125.3	239.7
H231	C23	N24	H232	250.5	119.3
C25	N24	C23	H24	125.3	116.6
C23	N24	C25	C26	75.3	89.4
C23	N24	C25	H251	310.0	209.5
C23	N24	C25	H252	200.6	329.4
H231	C23	C22	H22	189.8	72.2
C22	C23	H231	N24	122.7	238.8
C22	C23	H231	H232	241.3	119.4
N24	C23	H231	H232	118.7	240.6
H231	C23	N24	C25	31.2	175.0
H231	C23	N24	H24	265.9	58.4
H232	C23	C22	H22	80.3	191.6
C22	C23	H232	N24	237.3	121.2
C22	C23	H232	H231	118.7	240.5
N24	C23	H232	H231	241.3	119.3
H232	C23	N24	C25	140.7	55.6
H232	C23	N24	H24	15.4	299.0
C25	N24	C23	H231	31.2	175.0
C25	N24	C23	H232	140.7	55.6
C23	N24	C25	H24	234.7	243.4
C26	C25	N24	H251	125.3	239.9
C26	C25	N24	H252	234.7	120.0
N24	C25	C26	C27	294.1	264.6
N24	C25	C26	H261	168.8	24.5
N24	C25	C26	H262	59.3	144.6
H251	C25	N24	H252	109.5	240.1
H24	N24	C23	H231	265.9	58.4
H24	N24	C23	H232	15.4	299.0
C23	N24	H24	C25	123.3	120.2
H24	N24	C25	C26	200.6	206.0
H24	N24	C25	H251	75.3	326.1
H24	N24	C25	H252	325.8	86.0
N21	C27	C26	C25	81.9	39.4
C26	C25	N24	H24	200.6	206.0
N24	C25	C26	H251	234.7	120.1
N24	C25	C26	H252	125.3	240.0
H251	C25	C26	H252	250.5	119.9
C27	C26	C25	H261	125.3	240.1
C27	C26	C25	H262	234.7	119.9
C25	C26	C27	H271	207.2	159.6
C25	C26	C27	H272	316.6	279.1
H261	C26	C25	H262	109.5	239.8
H251	C25	N24	H24	75.3	326.1
N24	C25	H251	C26	127.0	239.8
N24	C25	H251	H252	243.5	119.9
C26	C25	H251	H252	116.5	240.1
H251	C25	C26	C27	59.3	144.5
H251	C25	C26	H261	294.1	264.4
H251	C25	C26	H262	184.6	24.6
H252	C25	N24	H24	325.8	86.0
N24	C25	H252	C26	233.0	120.1
N24	C25	H252	H251	116.5	240.1
C26	C25	H252	H251	243.5	119.9
H252	C25	C26	C27	168.8	24.6
H252	C25	C26	H261	43.5	144.5
H252	C25	C26	H262	294.1	264.7
N21	C27	C26	H271	234.7	239.7
N21	C27	C26	H272	125.3	120.3
C27	C26	C25	H251	59.3	144.5
C27	C26	C25	H252	168.8	24.6
C25	C26	C27	H261	234.7	119.9
C25	C26	C27	H262	125.2	240.0
H261	C26	C27	H262	250.5	120.1
H271	C27	C26	H272	250.5	240.6
H261	C26	C25	H251	294.1	264.4
H261	C26	C25	H252	43.5	144.5
C25	C26	H261	C27	125.2	240.4
C25	C26	H261	H262	242.6	120.2
C27	C26	H261	H262	117.4	239.9
H261	C26	C27	H271	332.4	39.8
H261	C26	C27	H272	81.9	159.2
H262	C26	C25	H251	184.6	24.6
H262	C26	C25	H252	294.1	264.7
C25	C26	H262	C27	234.8	119.7
C25	C26	H262	H261	117.4	239.8
C27	C26	H262	H261	242.6	120.1
H262	C26	C27	H271	81.9	279.6
H262	C26	C27	H272	191.4	39.1
N21	C27	H271	C26	125.9	121.1
N21	C27	H271	H272	242.9	240.6
H271	C27	C26	H261	332.4	39.8
H271	C27	C26	H262	81.9	279.6
C26	C27	H271	H272	117.1	119.4
N21	C27	H272	C26	234.1	238.9
N21	C27	H272	H271	117.1	119.4
H272	C27	C26	H261	81.9	159.2
H272	C27	C26	H262	191.4	39.1
C26	C27	H272	H271	243.0	240.6
S5	C5	C10	C6	185.4	180.3
C10	C5	C6	C7	2.9	0.3
C10	C5	C6	H6	182.9	180.3
C4	C10	C5	C9	179.6	180.8
C5	C10	C4	CM	2.7	359.4
C5	C10	C4	C3	181.7	179.7
C5	C10	C9	C8	359.5	0.5
C5	C10	C9	C1	179.0	180.3
S5	C5	C6	C10	175.3	179.7
C6	C5	C10	C4	178.4	180.2
C6	C5	C10	C9	358.7	359.4
C8	C7	C6	C5	357.3	0.0
C5	C6	C7	H7	177.2	180.0
C7	C6	C5	H6	180.0	180.0
C4	C10	C5	C6	178.4	180.2
C5	C10	C4	C9	180.3	179.2
C4	C10	C9	C8	179.8	179.8
C4	C10	C9	C1	359.3	359.6
CM	C4	C10	C3	181.0	179.8
C10	C4	CM	HM1	54.7	278.9
C10	C4	CM	HM2	180.0	38.9
C10	C4	CM	HM3	305.3	158.9
C10	C4	C3	N2	0.3	359.8
C10	C4	C3	H3	180.3	179.8
C9	C10	C5	C6	358.7	359.4
C5	C10	C9	C4	179.7	180.8
C9	C10	C4	CM	182.3	180.2
C9	C10	C4	C3	1.4	0.5
C8	C9	C10	C1	180.5	180.2
C10	C9	C8	C7	0.6	359.8
C10	C9	C8	H8	180.6	179.8
C10	C9	C1	N2	358.4	0.2
C10	C9	C1	H1	178.4	180.2
CM	C4	C10	C9	182.3	180.2
C10	C4	CM	C3	179.1	180.2
CM	C4	C3	N2	179.4	180.0
CM	C4	C3	H3	359.4	0.0
HM1	CM	C4	HM2	234.7	240.0
HM1	CM	C4	HM3	109.5	120.0
HM2	CM	C4	HM3	234.7	240.0
C3	C4	C10	C9	1.4	0.5
C10	C4	C3	CM	180.8	179.8
C3	C4	CM	HM1	235.6	98.7
C3	C4	CM	HM2	0.9	218.7
C3	C4	CM	HM3	126.2	338.7
C1	N2	C3	C4	357.3	360.0
N2	C3	C4	H3	180.0	180.0
HM1	CM	C4	C3	235.6	98.7
C4	CM	HM1	HM2	137.4	120.0
C4	CM	HM1	HM3	248.7	240.0
HM2	CM	HM1	HM3	111.3	119.9
HM2	CM	C4	C3	0.9	218.7
C4	CM	HM2	HM1	234.7	239.9
C4	CM	HM2	HM3	125.3	120.0
HM1	CM	HM2	HM3	250.5	240.0
HM3	CM	C4	C3	126.2	338.7
C4	CM	HM3	HM1	111.3	120.1
C4	CM	HM3	HM2	222.6	240.0
HM1	CM	HM3	HM2	111.3	119.9
C10	C9	C8	C1	179.5	179.8
C8	C9	C1	N2	177.9	180.0
C8	C9	C1	H1	357.9	0.0
C7	C8	C9	H8	180.0	180.0
C9	C8	C7	C6	0.9	360.0
C9	C8	C7	H7	181.0	180.0
C10	C9	C1	C8	180.5	180.2
C1	C9	C8	C7	181.2	180.0
C1	C9	C8	H8	1.2	360.0
N2	C1	C9	H1	180.0	180.0
C9	C1	N2	C3	3.4	0.0
C5	C6	C7	C8	357.3	0.0
C7	C8	C9	C1	181.2	180.0
C9	C8	C7	H8	180.0	180.0
C6	C7	C8	H7	180.0	180.0
C8	C7	C6	H6	177.2	180.0
H8	C8	C9	C1	1.2	360.0
C9	C8	H8	C7	180.0	180.0
H8	C8	C7	C6	181.0	180.0
H8	C8	C7	H7	1.0	0.0
C5	C6	C7	H6	180.0	180.0
C6	C7	C8	H8	181.0	180.0
C8	C7	C6	H7	180.0	180.0
H7	C7	C8	H8	1.0	0.0
C8	C7	H7	C6	180.0	180.0
H7	C7	C6	H6	357.2	360.0
C5	C6	H6	C7	180.0	180.0
H6	C6	C7	H7	357.2	360.0
C4	C3	N2	C1	357.3	360.0
C9	C1	N2	H1	180.0	180.0
C1	N2	C3	H3	177.3	180.0
C9	C1	H1	N2	180.0	180.0
H1	C1	N2	C3	183.4	180.0
C4	C3	N2	H3	180.0	180.0
C3	N2	C1	H1	183.4	180.0
C4	C3	H3	N2	180.0	180.0