PDB Chemical Component H4B
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for H4B
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.350 |
1.316 |
| N1 |
C8A |
1.372 |
1.338 |
| C2 |
N2 |
1.318 |
1.373 |
| C2 |
N3 |
1.346 |
1.360 |
| N2 |
HN21 |
1.020 |
0.970 |
| N2 |
HN22 |
1.020 |
0.970 |
| N3 |
C4 |
1.411 |
1.350 |
| N3 |
HN3 |
1.020 |
0.971 |
| C4 |
O4 |
1.223 |
1.222 |
| C4 |
C4A |
1.400 |
1.399 |
| C4A |
C8A |
1.373 |
1.386 |
| C4A |
N5 |
1.451 |
1.412 |
| C8A |
N8 |
1.326 |
1.386 |
| N5 |
C6 |
1.503 |
1.471 |
| N5 |
HN5 |
1.021 |
0.970 |
| N8 |
C7 |
1.455 |
1.469 |
| N8 |
HN8 |
1.019 |
0.970 |
| C6 |
C7 |
1.518 |
1.535 |
| C6 |
C9 |
1.537 |
1.529 |
| C6 |
H6 |
1.115 |
1.090 |
| C7 |
H71 |
1.116 |
1.090 |
| C7 |
H72 |
1.115 |
1.090 |
| C9 |
O9 |
1.423 |
1.430 |
| C9 |
C10 |
1.519 |
1.529 |
| C9 |
H9 |
1.115 |
1.090 |
| O9 |
HO9 |
0.951 |
0.966 |
| C10 |
C11 |
1.484 |
1.530 |
| C10 |
O10 |
1.427 |
1.430 |
| C10 |
H10 |
1.115 |
1.089 |
| C11 |
H111 |
1.115 |
1.090 |
| C11 |
H112 |
1.114 |
1.090 |
| C11 |
H113 |
1.116 |
1.090 |
| O10 |
HO0 |
0.950 |
0.967 |
Bond Angles for H4B
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C8A |
122.3 |
121.0 |
| N1 |
C2 |
N2 |
120.5 |
119.2 |
| N1 |
C2 |
N3 |
119.8 |
121.6 |
| N1 |
C8A |
C4A |
117.4 |
119.6 |
| N1 |
C8A |
N8 |
118.6 |
120.5 |
| N2 |
C2 |
N3 |
119.7 |
119.2 |
| C2 |
N2 |
HN21 |
120.5 |
120.0 |
| C2 |
N2 |
HN22 |
108.2 |
120.0 |
| C2 |
N3 |
C4 |
122.2 |
120.2 |
| C2 |
N3 |
HN3 |
116.5 |
119.9 |
| HN21 |
N2 |
HN22 |
108.3 |
120.0 |
| C4 |
N3 |
HN3 |
121.3 |
119.9 |
| N3 |
C4 |
O4 |
119.3 |
120.7 |
| N3 |
C4 |
C4A |
115.1 |
118.5 |
| O4 |
C4 |
C4A |
125.6 |
120.8 |
| C4 |
C4A |
C8A |
123.0 |
119.1 |
| C4 |
C4A |
N5 |
116.4 |
120.7 |
| C8A |
C4A |
N5 |
120.5 |
120.2 |
| C4A |
C8A |
N8 |
123.6 |
119.9 |
| C4A |
N5 |
C6 |
112.6 |
118.4 |
| C4A |
N5 |
HN5 |
111.1 |
120.8 |
| C8A |
N8 |
C7 |
120.2 |
119.0 |
| C8A |
N8 |
HN8 |
108.4 |
120.5 |
| C6 |
N5 |
HN5 |
111.0 |
120.8 |
| N5 |
C6 |
C7 |
111.4 |
108.1 |
| N5 |
C6 |
C9 |
106.3 |
109.8 |
| N5 |
C6 |
H6 |
111.6 |
109.7 |
| C7 |
N8 |
HN8 |
108.3 |
120.5 |
| N8 |
C7 |
C6 |
112.6 |
108.4 |
| N8 |
C7 |
H71 |
111.0 |
109.8 |
| N8 |
C7 |
H72 |
111.1 |
109.7 |
| C7 |
C6 |
C9 |
113.0 |
109.8 |
| C7 |
C6 |
H6 |
104.8 |
109.8 |
| C6 |
C7 |
H71 |
111.0 |
109.7 |
| C6 |
C7 |
H72 |
111.0 |
109.6 |
| C9 |
C6 |
H6 |
109.9 |
109.7 |
| C6 |
C9 |
O9 |
112.1 |
109.5 |
| C6 |
C9 |
C10 |
111.2 |
109.5 |
| C6 |
C9 |
H9 |
106.1 |
109.5 |
| H71 |
C7 |
H72 |
99.3 |
109.7 |
| O9 |
C9 |
C10 |
108.2 |
109.4 |
| O9 |
C9 |
H9 |
109.1 |
109.5 |
| C9 |
O9 |
HO9 |
112.2 |
106.8 |
| C10 |
C9 |
H9 |
110.1 |
109.5 |
| C9 |
C10 |
C11 |
111.6 |
109.5 |
| C9 |
C10 |
O10 |
105.2 |
109.4 |
| C9 |
C10 |
H10 |
112.2 |
109.5 |
| C11 |
C10 |
O10 |
113.1 |
109.5 |
| C11 |
C10 |
H10 |
104.2 |
109.4 |
| C10 |
C11 |
H111 |
111.6 |
109.5 |
| C10 |
C11 |
H112 |
111.4 |
109.4 |
| C10 |
C11 |
H113 |
111.4 |
109.5 |
| O10 |
C10 |
H10 |
110.7 |
109.5 |
| C10 |
O10 |
HO0 |
105.1 |
106.8 |
| H111 |
C11 |
H112 |
111.4 |
109.5 |
| H111 |
C11 |
H113 |
111.4 |
109.5 |
| H112 |
C11 |
H113 |
98.9 |
109.5 |
Torsion Angles for H4B
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C8A |
C4A |
356.6 |
359.8 |
| C2 |
N1 |
C8A |
N8 |
183.9 |
179.8 |
| N2 |
C2 |
N1 |
N3 |
177.4 |
179.9 |
| N1 |
C2 |
N2 |
HN21 |
180.0 |
360.0 |
| N1 |
C2 |
N2 |
HN22 |
54.7 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
359.1 |
360.0 |
| N1 |
C2 |
N3 |
HN3 |
179.1 |
180.1 |
| C8A |
N1 |
C2 |
N2 |
178.9 |
180.0 |
| C8A |
N1 |
C2 |
N3 |
1.5 |
0.1 |
| C4 |
C4A |
C8A |
N1 |
4.8 |
0.2 |
| N1 |
C8A |
C4A |
N5 |
182.5 |
180.2 |
| C4A |
C8A |
N1 |
N8 |
172.7 |
180.0 |
| N1 |
C8A |
N8 |
C7 |
179.3 |
162.8 |
| N1 |
C8A |
N8 |
HN8 |
54.0 |
342.9 |
| N2 |
C2 |
N1 |
C8A |
178.9 |
180.0 |
| N1 |
C2 |
N2 |
N3 |
182.6 |
180.1 |
| N2 |
C2 |
N3 |
C4 |
181.7 |
180.1 |
| N2 |
C2 |
N3 |
HN3 |
1.7 |
0.2 |
| HN21 |
N2 |
C2 |
HN22 |
125.3 |
179.9 |
| N3 |
C2 |
N1 |
C8A |
1.5 |
0.1 |
| N1 |
C2 |
N3 |
N2 |
177.4 |
179.9 |
| N3 |
C2 |
N2 |
HN21 |
357.4 |
179.9 |
| N3 |
C2 |
N2 |
HN22 |
232.1 |
360.0 |
| C4 |
N3 |
C2 |
HN3 |
180.0 |
179.9 |
| C2 |
N3 |
C4 |
O4 |
181.0 |
180.0 |
| C2 |
N3 |
C4 |
C4A |
2.1 |
0.0 |
| HN21 |
N2 |
C2 |
N3 |
357.4 |
179.9 |
| C2 |
N2 |
HN21 |
HN22 |
234.8 |
180.1 |
| HN22 |
N2 |
C2 |
N3 |
232.1 |
360.0 |
| C2 |
N2 |
HN22 |
HN21 |
132.2 |
179.9 |
| C2 |
N3 |
C4 |
HN3 |
180.0 |
180.1 |
| O4 |
C4 |
N3 |
C4A |
178.9 |
180.0 |
| N3 |
C4 |
C4A |
C8A |
355.8 |
359.9 |
| N3 |
C4 |
C4A |
N5 |
178.0 |
179.9 |
| C2 |
N3 |
HN3 |
C4 |
180.0 |
179.9 |
| HN3 |
N3 |
C4 |
O4 |
1.0 |
359.9 |
| HN3 |
N3 |
C4 |
C4A |
182.1 |
179.9 |
| O4 |
C4 |
N3 |
HN3 |
1.0 |
359.9 |
| N3 |
C4 |
O4 |
C4A |
181.2 |
180.0 |
| O4 |
C4 |
C4A |
C8A |
177.0 |
179.9 |
| O4 |
C4 |
C4A |
N5 |
359.2 |
359.9 |
| N1 |
C8A |
C4A |
C4 |
4.8 |
0.2 |
| C4A |
C4 |
N3 |
HN3 |
182.1 |
179.9 |
| N3 |
C4 |
C4A |
O4 |
178.8 |
180.0 |
| C8A |
C4A |
C4 |
N5 |
177.8 |
180.0 |
| C4 |
C4A |
C8A |
N8 |
177.1 |
180.2 |
| C4 |
C4A |
N5 |
C6 |
203.3 |
164.1 |
| C4 |
C4A |
N5 |
HN5 |
78.0 |
344.0 |
| N1 |
C8A |
C4A |
N8 |
187.7 |
180.0 |
| C4 |
C4A |
C8A |
N5 |
182.3 |
180.0 |
| C8A |
C4A |
N5 |
C6 |
25.4 |
344.1 |
| C8A |
C4A |
N5 |
HN5 |
260.1 |
164.0 |
| C4A |
C8A |
N8 |
C7 |
7.0 |
342.8 |
| C4A |
C8A |
N8 |
HN8 |
241.8 |
162.9 |
| C4 |
C4A |
N5 |
C8A |
177.9 |
180.0 |
| N5 |
C4A |
C8A |
N8 |
354.8 |
0.2 |
| C6 |
N5 |
C4A |
HN5 |
125.3 |
180.1 |
| C4A |
N5 |
C6 |
C7 |
314.3 |
44.1 |
| C4A |
N5 |
C6 |
C9 |
190.8 |
284.4 |
| C4A |
N5 |
C6 |
H6 |
71.0 |
163.8 |
| N1 |
C8A |
N8 |
C4A |
172.2 |
180.0 |
| N8 |
C8A |
C4A |
N5 |
354.8 |
0.2 |
| C7 |
N8 |
C8A |
HN8 |
125.2 |
179.9 |
| C8A |
N8 |
C7 |
C6 |
331.2 |
45.7 |
| C8A |
N8 |
C7 |
H71 |
96.4 |
285.9 |
| C8A |
N8 |
C7 |
H72 |
205.9 |
165.3 |
| C4A |
N5 |
C6 |
HN5 |
234.7 |
179.9 |
| N8 |
C7 |
C6 |
N5 |
47.6 |
303.6 |
| C7 |
C6 |
N5 |
C9 |
123.4 |
119.7 |
| C7 |
C6 |
N5 |
H6 |
243.3 |
240.3 |
| N5 |
C6 |
C7 |
H71 |
282.4 |
63.4 |
| N5 |
C6 |
C7 |
H72 |
172.9 |
183.9 |
| C9 |
C6 |
N5 |
H6 |
119.8 |
120.6 |
| N5 |
C6 |
C9 |
O9 |
59.0 |
179.3 |
| N5 |
C6 |
C9 |
C10 |
180.3 |
299.3 |
| N5 |
C6 |
C9 |
H9 |
300.0 |
59.3 |
| C4A |
N5 |
HN5 |
C6 |
126.1 |
180.1 |
| HN5 |
N5 |
C6 |
C7 |
79.6 |
224.2 |
| HN5 |
N5 |
C6 |
C9 |
316.1 |
104.5 |
| HN5 |
N5 |
C6 |
H6 |
196.3 |
343.9 |
| C8A |
N8 |
C7 |
HN8 |
234.7 |
180.1 |
| N5 |
C6 |
C7 |
N8 |
47.6 |
303.6 |
| N8 |
C7 |
C6 |
C9 |
167.2 |
63.2 |
| N8 |
C7 |
C6 |
H6 |
286.8 |
183.9 |
| C6 |
C7 |
N8 |
H71 |
234.8 |
119.8 |
| C6 |
C7 |
N8 |
H72 |
125.3 |
240.3 |
| H71 |
C7 |
N8 |
H72 |
250.5 |
120.6 |
| C8A |
N8 |
HN8 |
C7 |
132.0 |
179.9 |
| HN8 |
N8 |
C7 |
C6 |
96.5 |
225.6 |
| HN8 |
N8 |
C7 |
H71 |
221.7 |
105.8 |
| HN8 |
N8 |
C7 |
H72 |
331.2 |
345.2 |
| C7 |
C6 |
N5 |
HN5 |
79.6 |
224.2 |
| N5 |
C6 |
C7 |
C9 |
240.4 |
240.3 |
| N5 |
C6 |
C7 |
H6 |
120.8 |
119.6 |
| C6 |
C7 |
N8 |
HN8 |
96.5 |
225.6 |
| N8 |
C7 |
C6 |
H71 |
125.2 |
240.2 |
| N8 |
C7 |
C6 |
H72 |
234.7 |
119.7 |
| C9 |
C6 |
C7 |
H6 |
240.4 |
239.3 |
| C7 |
C6 |
C9 |
O9 |
296.5 |
60.7 |
| C7 |
C6 |
C9 |
C10 |
57.9 |
180.7 |
| C7 |
C6 |
C9 |
H9 |
177.5 |
300.7 |
| H71 |
C7 |
C6 |
H72 |
109.5 |
239.5 |
| C9 |
C6 |
N5 |
HN5 |
316.1 |
104.5 |
| N5 |
C6 |
C9 |
C7 |
122.4 |
118.6 |
| N5 |
C6 |
C9 |
H6 |
239.1 |
239.3 |
| C7 |
C6 |
C9 |
H6 |
116.6 |
120.7 |
| C9 |
C6 |
C7 |
H71 |
41.9 |
183.0 |
| C9 |
C6 |
C7 |
H72 |
292.5 |
303.5 |
| O9 |
C9 |
C6 |
C10 |
238.6 |
240.0 |
| O9 |
C9 |
C6 |
H9 |
119.0 |
120.0 |
| C6 |
C9 |
O9 |
HO9 |
180.0 |
60.1 |
| C10 |
C9 |
C6 |
H9 |
240.3 |
240.0 |
| C6 |
C9 |
C10 |
C11 |
166.6 |
180.0 |
| C6 |
C9 |
C10 |
O10 |
43.6 |
60.0 |
| C6 |
C9 |
C10 |
H10 |
283.1 |
300.0 |
| H6 |
C6 |
N5 |
HN5 |
196.3 |
343.9 |
| N5 |
C6 |
H6 |
C7 |
239.3 |
241.4 |
| N5 |
C6 |
H6 |
C9 |
117.7 |
120.7 |
| C7 |
C6 |
H6 |
C9 |
238.4 |
239.3 |
| H6 |
C6 |
C7 |
H71 |
161.5 |
303.7 |
| H6 |
C6 |
C7 |
H72 |
52.1 |
64.2 |
| H6 |
C6 |
C9 |
O9 |
179.9 |
300.0 |
| H6 |
C6 |
C9 |
C10 |
301.3 |
59.9 |
| H6 |
C6 |
C9 |
H9 |
60.9 |
179.9 |
| H71 |
C7 |
N8 |
HN8 |
221.7 |
105.8 |
| N8 |
C7 |
H71 |
C6 |
233.9 |
119.0 |
| N8 |
C7 |
H71 |
H72 |
117.0 |
239.4 |
| H71 |
C7 |
C6 |
C9 |
41.9 |
183.0 |
| H71 |
C7 |
C6 |
H6 |
161.5 |
303.7 |
| C6 |
C7 |
H71 |
H72 |
243.1 |
120.5 |
| H72 |
C7 |
N8 |
HN8 |
331.2 |
345.2 |
| N8 |
C7 |
H72 |
C6 |
126.1 |
241.1 |
| N8 |
C7 |
H72 |
H71 |
243.1 |
120.6 |
| H72 |
C7 |
C6 |
C9 |
292.5 |
303.5 |
| H72 |
C7 |
C6 |
H6 |
52.1 |
64.2 |
| C6 |
C7 |
H72 |
H71 |
116.9 |
239.5 |
| O9 |
C9 |
C6 |
H6 |
179.9 |
300.0 |
| C6 |
C9 |
O9 |
C10 |
123.1 |
120.0 |
| C6 |
C9 |
O9 |
H9 |
242.8 |
240.0 |
| C10 |
C9 |
O9 |
H9 |
119.8 |
120.0 |
| O9 |
C9 |
C10 |
C11 |
290.2 |
300.0 |
| O9 |
C9 |
C10 |
O10 |
167.2 |
180.0 |
| O9 |
C9 |
C10 |
H10 |
46.7 |
60.0 |
| C10 |
C9 |
C6 |
H6 |
301.3 |
59.9 |
| C6 |
C9 |
C10 |
O9 |
236.4 |
240.0 |
| C6 |
C9 |
C10 |
H9 |
117.2 |
120.0 |
| O9 |
C9 |
C10 |
H9 |
240.8 |
240.0 |
| C10 |
C9 |
O9 |
HO9 |
56.9 |
300.0 |
| C11 |
C10 |
C9 |
O10 |
123.0 |
120.0 |
| C11 |
C10 |
C9 |
H10 |
243.5 |
240.0 |
| C9 |
C10 |
C11 |
H111 |
180.0 |
180.1 |
| C9 |
C10 |
C11 |
H112 |
305.3 |
300.0 |
| C9 |
C10 |
C11 |
H113 |
54.7 |
60.0 |
| O10 |
C10 |
C9 |
H10 |
120.5 |
120.0 |
| C9 |
C10 |
O10 |
HO0 |
180.0 |
60.0 |
| H9 |
C9 |
C6 |
H6 |
60.9 |
179.9 |
| C6 |
C9 |
H9 |
O9 |
121.0 |
120.0 |
| C6 |
C9 |
H9 |
C10 |
239.6 |
240.0 |
| O9 |
C9 |
H9 |
C10 |
118.6 |
120.0 |
| H9 |
C9 |
O9 |
HO9 |
297.2 |
180.1 |
| H9 |
C9 |
C10 |
C11 |
49.4 |
60.0 |
| H9 |
C9 |
C10 |
O10 |
286.3 |
300.0 |
| H9 |
C9 |
C10 |
H10 |
165.8 |
180.0 |
| HO9 |
O9 |
C9 |
C10 |
56.9 |
300.0 |
| HO9 |
O9 |
C9 |
H9 |
297.2 |
180.1 |
| C11 |
C10 |
C9 |
H9 |
49.4 |
60.0 |
| C9 |
C10 |
C11 |
O10 |
241.6 |
240.0 |
| C9 |
C10 |
C11 |
H10 |
121.3 |
120.1 |
| O10 |
C10 |
C11 |
H10 |
239.7 |
240.0 |
| C11 |
C10 |
O10 |
HO0 |
57.9 |
300.0 |
| H111 |
C11 |
C10 |
H112 |
234.7 |
240.0 |
| H111 |
C11 |
C10 |
H113 |
125.2 |
120.1 |
| H112 |
C11 |
C10 |
H113 |
250.5 |
240.0 |
| O10 |
C10 |
C9 |
H9 |
286.3 |
300.0 |
| C9 |
C10 |
O10 |
C11 |
122.1 |
120.0 |
| C9 |
C10 |
O10 |
H10 |
238.5 |
240.0 |
| C11 |
C10 |
O10 |
H10 |
116.5 |
120.0 |
| O10 |
C10 |
C11 |
H111 |
298.4 |
300.0 |
| O10 |
C10 |
C11 |
H112 |
63.7 |
60.0 |
| O10 |
C10 |
C11 |
H113 |
173.1 |
180.0 |
| H10 |
C10 |
C9 |
H9 |
165.8 |
180.0 |
| C9 |
C10 |
H10 |
C11 |
239.1 |
240.0 |
| C9 |
C10 |
H10 |
O10 |
117.2 |
120.0 |
| C11 |
C10 |
H10 |
O10 |
238.1 |
240.0 |
| H10 |
C10 |
C11 |
H111 |
58.7 |
60.0 |
| H10 |
C10 |
C11 |
H112 |
184.0 |
180.0 |
| H10 |
C10 |
C11 |
H113 |
293.5 |
300.0 |
| H10 |
C10 |
O10 |
HO0 |
301.4 |
180.0 |
| H111 |
C11 |
C10 |
O10 |
298.4 |
300.0 |
| H111 |
C11 |
C10 |
H10 |
58.7 |
60.0 |
| C10 |
C11 |
H111 |
H112 |
125.3 |
120.0 |
| C10 |
C11 |
H111 |
H113 |
234.7 |
240.0 |
| H112 |
C11 |
H111 |
H113 |
109.4 |
120.0 |
| H112 |
C11 |
C10 |
O10 |
63.7 |
60.0 |
| H112 |
C11 |
C10 |
H10 |
184.0 |
180.0 |
| C10 |
C11 |
H112 |
H111 |
234.6 |
240.0 |
| C10 |
C11 |
H112 |
H113 |
117.3 |
120.0 |
| H111 |
C11 |
H112 |
H113 |
242.7 |
239.9 |
| H113 |
C11 |
C10 |
O10 |
173.1 |
180.0 |
| H113 |
C11 |
C10 |
H10 |
293.5 |
300.0 |
| C10 |
C11 |
H113 |
H111 |
125.4 |
120.0 |
| C10 |
C11 |
H113 |
H112 |
242.7 |
240.1 |
| H111 |
C11 |
H113 |
H112 |
117.3 |
120.1 |
| HO0 |
O10 |
C10 |
H10 |
301.4 |
180.0 |