Atom Nomenclature for H2W

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for H2W

Atom Name (V3) Atom Name (V2)
CAF CAF
CAE CAE
CAO CAO
FAP FAP
CAQ CAQ
CAR CAR
CAS CAS
CAD CAD
CAB CAB
OAC OAC
NAA NAA
CAG CAG
CAH CAH
CAI CAI
CAJ CAJ
CAK CAK
CL CL
CAM CAM
CAN CAN
HAF HAF
HAQ HAQ
HAR HAR
HAS HAS
HAA HAA
HAI HAI
HAN HAN
HAJ HAJ
HAM HAM