PDB Chemical Component H2U

Ideal Model

Chemical Description

Name 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
Formula C9 H15 N2 O9 P
Formal charge 0
Molecular weight 326.197 g/mol
Component type RNA LINKING
Nonstandard Parent Id U

Chemical features

Atom count 36
Chiral atom count 4
Chiral atoms C4' C3' C1' C2'
Observed leaving atoms OP3 HO3'
Bond count 37
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5'-uridylic acid
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-5-(2,4-dioxo-1,3-diazinan-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2CCC(=O)NC2=O
SMILES (CACTVS) O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2CCC(=O)NC2=O
Stereo SMILES (OpenEye) C1CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O
InChI descriptor InChI=1S/C9H15N2O9P/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(20-8)3-19-21(16,17)18/h4,6-8,13-14H,1-3H2,(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1
InChIKey descriptor NBWDKGJHOHJBRJ-XVFCMESISA-N

Status Information

Last modified 2011-06-04
Created 1999-07-08
Release status REL
Replaces DHU
Model PDB code 1EVV
Processing site EBI