PDB Chemical Component H2B
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for H2B
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C2 |
1.338 |
1.335 |
N1 |
C8A |
1.332 |
1.312 |
C2 |
N2 |
1.334 |
1.371 |
C2 |
N3 |
1.337 |
1.319 |
N2 |
H22 |
1.021 |
0.970 |
N2 |
H21 |
1.020 |
0.970 |
N3 |
C4 |
1.331 |
1.340 |
C4 |
O4 |
1.234 |
1.217 |
C4 |
C4A |
1.410 |
1.491 |
C4A |
C8A |
1.416 |
1.487 |
C4A |
N5 |
1.332 |
1.284 |
C8A |
N8 |
1.340 |
1.367 |
N5 |
C6 |
1.447 |
1.463 |
N8 |
C7 |
1.386 |
1.475 |
N8 |
H8 |
1.020 |
0.970 |
C6 |
C7 |
1.456 |
1.530 |
C6 |
C9 |
1.521 |
1.529 |
C6 |
H6 |
1.115 |
1.090 |
C7 |
H71 |
1.115 |
1.090 |
C7 |
H72 |
1.115 |
1.090 |
C9 |
O9 |
1.428 |
1.428 |
C9 |
C10 |
1.542 |
1.529 |
C9 |
H9 |
1.116 |
1.090 |
O9 |
H9O1 |
0.950 |
0.967 |
C10 |
C11 |
1.529 |
1.530 |
C10 |
O10 |
1.434 |
1.428 |
C10 |
H10 |
1.114 |
1.090 |
C11 |
H113 |
1.114 |
1.089 |
C11 |
H112 |
1.115 |
1.091 |
C11 |
H111 |
1.115 |
1.090 |
O10 |
H1O1 |
0.949 |
0.966 |
Bond Angles for H2B
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C8A |
120.9 |
121.3 |
N1 |
C2 |
N2 |
119.4 |
117.7 |
N1 |
C2 |
N3 |
121.4 |
124.7 |
N1 |
C8A |
C4A |
119.7 |
118.6 |
N1 |
C8A |
N8 |
119.9 |
123.2 |
N2 |
C2 |
N3 |
119.1 |
117.7 |
C2 |
N2 |
H22 |
119.4 |
120.0 |
C2 |
N2 |
H21 |
108.6 |
120.0 |
C2 |
N3 |
C4 |
121.1 |
121.9 |
H22 |
N2 |
H21 |
108.6 |
119.9 |
N3 |
C4 |
O4 |
122.3 |
121.5 |
N3 |
C4 |
C4A |
119.6 |
116.9 |
O4 |
C4 |
C4A |
118.1 |
121.5 |
C4 |
C4A |
C8A |
117.2 |
116.6 |
C4 |
C4A |
N5 |
121.4 |
122.6 |
C8A |
C4A |
N5 |
121.4 |
120.8 |
C4A |
C8A |
N8 |
120.4 |
118.2 |
C4A |
N5 |
C6 |
119.0 |
122.0 |
C8A |
N8 |
C7 |
121.7 |
116.3 |
C8A |
N8 |
H8 |
107.8 |
121.9 |
N5 |
C6 |
C7 |
117.3 |
110.7 |
N5 |
C6 |
C9 |
113.4 |
109.3 |
N5 |
C6 |
H6 |
113.4 |
109.2 |
C7 |
N8 |
H8 |
107.9 |
121.8 |
N8 |
C7 |
C6 |
117.1 |
108.7 |
N8 |
C7 |
H71 |
109.5 |
109.6 |
N8 |
C7 |
H72 |
109.5 |
109.6 |
C7 |
C6 |
C9 |
125.3 |
109.3 |
C7 |
C6 |
H6 |
84.3 |
109.2 |
C6 |
C7 |
H71 |
109.4 |
109.6 |
C6 |
C7 |
H72 |
109.4 |
109.6 |
C9 |
C6 |
H6 |
93.9 |
109.2 |
C6 |
C9 |
O9 |
109.2 |
109.5 |
C6 |
C9 |
C10 |
111.6 |
109.5 |
C6 |
C9 |
H9 |
108.1 |
109.4 |
H71 |
C7 |
H72 |
100.8 |
109.7 |
O9 |
C9 |
C10 |
109.3 |
109.5 |
O9 |
C9 |
H9 |
110.5 |
109.5 |
C9 |
O9 |
H9O1 |
109.2 |
106.8 |
C10 |
C9 |
H9 |
108.1 |
109.4 |
C9 |
C10 |
C11 |
110.8 |
109.5 |
C9 |
C10 |
O10 |
109.7 |
109.5 |
C9 |
C10 |
H10 |
108.6 |
109.4 |
C11 |
C10 |
O10 |
109.9 |
109.5 |
C11 |
C10 |
H10 |
108.4 |
109.4 |
C10 |
C11 |
H113 |
110.8 |
109.5 |
C10 |
C11 |
H112 |
111.7 |
109.4 |
C10 |
C11 |
H111 |
111.8 |
109.5 |
O10 |
C10 |
H10 |
109.5 |
109.5 |
C10 |
O10 |
H1O1 |
109.7 |
106.9 |
H113 |
C11 |
H112 |
111.7 |
109.4 |
H113 |
C11 |
H111 |
111.8 |
109.6 |
H112 |
C11 |
H111 |
98.6 |
109.5 |
Torsion Angles for H2B
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C8A |
C4A |
0.4 |
358.9 |
C2 |
N1 |
C8A |
N8 |
181.0 |
178.7 |
N2 |
C2 |
N1 |
N3 |
181.2 |
180.0 |
N1 |
C2 |
N2 |
H22 |
180.0 |
180.0 |
N1 |
C2 |
N2 |
H21 |
54.8 |
0.0 |
N1 |
C2 |
N3 |
C4 |
359.8 |
0.9 |
C8A |
N1 |
C2 |
N2 |
179.8 |
179.6 |
C8A |
N1 |
C2 |
N3 |
358.6 |
359.6 |
C4 |
C4A |
C8A |
N1 |
2.0 |
2.0 |
N1 |
C8A |
C4A |
N5 |
182.5 |
181.7 |
C4A |
C8A |
N1 |
N8 |
179.4 |
180.2 |
N1 |
C8A |
N8 |
C7 |
181.9 |
204.7 |
N1 |
C8A |
N8 |
H8 |
56.6 |
24.8 |
N2 |
C2 |
N1 |
C8A |
179.8 |
179.6 |
N1 |
C2 |
N2 |
N3 |
178.9 |
180.0 |
N2 |
C2 |
N3 |
C4 |
178.6 |
180.9 |
H22 |
N2 |
C2 |
H21 |
125.3 |
179.9 |
N3 |
C2 |
N1 |
C8A |
358.6 |
359.6 |
N1 |
C2 |
N3 |
N2 |
181.2 |
180.0 |
N3 |
C2 |
N2 |
H22 |
1.2 |
360.0 |
N3 |
C2 |
N2 |
H21 |
235.9 |
180.0 |
C2 |
N3 |
C4 |
O4 |
182.2 |
180.3 |
C2 |
N3 |
C4 |
C4A |
2.7 |
0.2 |
H22 |
N2 |
C2 |
N3 |
1.2 |
360.0 |
C2 |
N2 |
H22 |
H21 |
234.7 |
180.1 |
H21 |
N2 |
C2 |
N3 |
235.9 |
180.0 |
C2 |
N2 |
H21 |
H22 |
131.4 |
179.9 |
O4 |
C4 |
N3 |
C4A |
179.6 |
180.1 |
N3 |
C4 |
C4A |
C8A |
356.5 |
358.5 |
N3 |
C4 |
C4A |
N5 |
176.0 |
178.8 |
N3 |
C4 |
O4 |
C4A |
180.4 |
179.9 |
O4 |
C4 |
C4A |
C8A |
176.9 |
178.4 |
O4 |
C4 |
C4A |
N5 |
356.4 |
358.6 |
N1 |
C8A |
C4A |
C4 |
2.0 |
2.0 |
N3 |
C4 |
C4A |
O4 |
179.6 |
180.1 |
C8A |
C4A |
C4 |
N5 |
180.6 |
179.7 |
C4 |
C4A |
C8A |
N8 |
181.4 |
182.2 |
C4 |
C4A |
N5 |
C6 |
186.4 |
181.8 |
N1 |
C8A |
C4A |
N8 |
180.6 |
179.8 |
C4 |
C4A |
C8A |
N5 |
179.4 |
180.3 |
C8A |
C4A |
N5 |
C6 |
5.8 |
2.0 |
C4A |
C8A |
N8 |
C7 |
2.5 |
24.5 |
C4A |
C8A |
N8 |
H8 |
237.2 |
204.5 |
C4 |
C4A |
N5 |
C8A |
180.6 |
179.7 |
N5 |
C4A |
C8A |
N8 |
2.0 |
1.9 |
C4A |
N5 |
C6 |
C7 |
342.8 |
330.2 |
C4A |
N5 |
C6 |
C9 |
184.2 |
209.9 |
C4A |
N5 |
C6 |
H6 |
78.7 |
90.5 |
N1 |
C8A |
N8 |
C4A |
179.4 |
180.2 |
N8 |
C8A |
C4A |
N5 |
2.0 |
1.9 |
C7 |
N8 |
C8A |
H8 |
125.3 |
179.9 |
C8A |
N8 |
C7 |
C6 |
346.0 |
309.2 |
C8A |
N8 |
C7 |
H71 |
111.3 |
189.4 |
C8A |
N8 |
C7 |
H72 |
220.8 |
68.9 |
N8 |
C7 |
C6 |
N5 |
20.9 |
51.9 |
C7 |
C6 |
N5 |
C9 |
158.6 |
120.4 |
C7 |
C6 |
N5 |
H6 |
264.2 |
239.8 |
N5 |
C6 |
C7 |
H71 |
255.7 |
171.7 |
N5 |
C6 |
C7 |
H72 |
146.2 |
292.2 |
C9 |
C6 |
N5 |
H6 |
105.5 |
119.4 |
N5 |
C6 |
C9 |
O9 |
76.3 |
180.6 |
N5 |
C6 |
C9 |
C10 |
197.2 |
300.6 |
N5 |
C6 |
C9 |
H9 |
316.0 |
60.6 |
C8A |
N8 |
C7 |
H8 |
234.8 |
180.1 |
N5 |
C6 |
C7 |
N8 |
20.9 |
51.9 |
N8 |
C7 |
C6 |
C9 |
176.7 |
172.2 |
N8 |
C7 |
C6 |
H6 |
267.5 |
291.6 |
C6 |
C7 |
N8 |
H71 |
234.8 |
119.8 |
C6 |
C7 |
N8 |
H72 |
125.2 |
240.3 |
H71 |
C7 |
N8 |
H72 |
250.4 |
120.5 |
C8A |
N8 |
H8 |
C7 |
133.1 |
179.9 |
H8 |
N8 |
C7 |
C6 |
111.3 |
129.1 |
H8 |
N8 |
C7 |
H71 |
236.5 |
9.3 |
H8 |
N8 |
C7 |
H72 |
346.1 |
248.8 |
N5 |
C6 |
C7 |
C9 |
204.2 |
239.6 |
N5 |
C6 |
C7 |
H6 |
113.4 |
120.2 |
C6 |
C7 |
N8 |
H8 |
111.3 |
129.1 |
N8 |
C7 |
C6 |
H71 |
125.3 |
240.2 |
N8 |
C7 |
C6 |
H72 |
234.8 |
119.7 |
C9 |
C6 |
C7 |
H6 |
269.2 |
240.6 |
C7 |
C6 |
C9 |
O9 |
279.7 |
59.3 |
C7 |
C6 |
C9 |
C10 |
40.6 |
179.4 |
C7 |
C6 |
C9 |
H9 |
159.4 |
299.4 |
H71 |
C7 |
C6 |
H72 |
109.5 |
239.5 |
N5 |
C6 |
C9 |
C7 |
156.6 |
121.2 |
N5 |
C6 |
C9 |
H6 |
242.4 |
240.6 |
C7 |
C6 |
C9 |
H6 |
85.8 |
119.4 |
C9 |
C6 |
C7 |
H71 |
51.5 |
292.0 |
C9 |
C6 |
C7 |
H72 |
302.0 |
52.5 |
O9 |
C9 |
C6 |
C10 |
239.1 |
239.9 |
O9 |
C9 |
C6 |
H9 |
120.3 |
120.0 |
C6 |
C9 |
O9 |
H9O1 |
180.1 |
60.1 |
C10 |
C9 |
C6 |
H9 |
241.2 |
240.0 |
C6 |
C9 |
C10 |
C11 |
179.2 |
180.0 |
C6 |
C9 |
C10 |
O10 |
57.7 |
60.0 |
C6 |
C9 |
C10 |
H10 |
298.1 |
300.0 |
N5 |
C6 |
H6 |
C7 |
242.7 |
238.9 |
N5 |
C6 |
H6 |
C9 |
117.6 |
119.4 |
C7 |
C6 |
H6 |
C9 |
234.8 |
240.6 |
H6 |
C6 |
C7 |
H71 |
142.3 |
51.4 |
H6 |
C6 |
C7 |
H72 |
32.8 |
171.9 |
H6 |
C6 |
C9 |
O9 |
193.8 |
299.9 |
H6 |
C6 |
C9 |
C10 |
314.8 |
60.0 |
H6 |
C6 |
C9 |
H9 |
73.5 |
180.0 |
H71 |
C7 |
N8 |
H8 |
236.5 |
9.3 |
N8 |
C7 |
H71 |
C6 |
230.4 |
119.2 |
N8 |
C7 |
H71 |
H72 |
115.3 |
239.6 |
H71 |
C7 |
C6 |
C9 |
51.5 |
292.0 |
H71 |
C7 |
C6 |
H6 |
142.3 |
51.4 |
C6 |
C7 |
H71 |
H72 |
244.8 |
120.4 |
H72 |
C7 |
N8 |
H8 |
346.1 |
248.8 |
N8 |
C7 |
H72 |
C6 |
129.6 |
240.8 |
N8 |
C7 |
H72 |
H71 |
244.7 |
120.4 |
H72 |
C7 |
C6 |
C9 |
302.0 |
52.5 |
H72 |
C7 |
C6 |
H6 |
32.8 |
171.9 |
C6 |
C7 |
H72 |
H71 |
115.2 |
239.6 |
O9 |
C9 |
C6 |
H6 |
193.8 |
299.9 |
C6 |
C9 |
O9 |
C10 |
122.3 |
120.1 |
C6 |
C9 |
O9 |
H9 |
241.2 |
240.0 |
C10 |
C9 |
O9 |
H9 |
118.9 |
120.0 |
O9 |
C9 |
C10 |
C11 |
300.1 |
300.1 |
O9 |
C9 |
C10 |
O10 |
178.6 |
180.0 |
O9 |
C9 |
C10 |
H10 |
59.0 |
60.0 |
C10 |
C9 |
C6 |
H6 |
314.8 |
60.0 |
C6 |
C9 |
C10 |
O9 |
239.1 |
239.9 |
C6 |
C9 |
C10 |
H9 |
118.8 |
120.0 |
O9 |
C9 |
C10 |
H9 |
239.7 |
240.0 |
C10 |
C9 |
O9 |
H9O1 |
57.7 |
300.0 |
C11 |
C10 |
C9 |
O10 |
121.5 |
120.0 |
C11 |
C10 |
C9 |
H10 |
241.1 |
240.1 |
C9 |
C10 |
C11 |
H113 |
180.0 |
180.0 |
C9 |
C10 |
C11 |
H112 |
305.3 |
299.9 |
C9 |
C10 |
C11 |
H111 |
54.7 |
59.9 |
O10 |
C10 |
C9 |
H10 |
119.6 |
120.0 |
C9 |
C10 |
O10 |
H1O1 |
180.0 |
60.0 |
H9 |
C9 |
C6 |
H6 |
73.5 |
180.0 |
C6 |
C9 |
H9 |
O9 |
119.5 |
120.0 |
C6 |
C9 |
H9 |
C10 |
239.1 |
240.0 |
O9 |
C9 |
H9 |
C10 |
119.6 |
120.0 |
H9 |
C9 |
O9 |
H9O1 |
298.9 |
180.0 |
H9 |
C9 |
C10 |
C11 |
60.4 |
60.1 |
H9 |
C9 |
C10 |
O10 |
298.9 |
300.0 |
H9 |
C9 |
C10 |
H10 |
179.3 |
180.0 |
H9O1 |
O9 |
C9 |
C10 |
57.7 |
300.0 |
H9O1 |
O9 |
C9 |
H9 |
298.9 |
180.0 |
C11 |
C10 |
C9 |
H9 |
60.4 |
60.1 |
C9 |
C10 |
C11 |
O10 |
238.6 |
239.9 |
C9 |
C10 |
C11 |
H10 |
119.0 |
119.9 |
O10 |
C10 |
C11 |
H10 |
240.4 |
240.0 |
C11 |
C10 |
O10 |
H1O1 |
58.0 |
299.9 |
H113 |
C11 |
C10 |
H112 |
234.8 |
240.1 |
H113 |
C11 |
C10 |
H111 |
125.4 |
120.1 |
H112 |
C11 |
C10 |
H111 |
250.6 |
240.1 |
O10 |
C10 |
C9 |
H9 |
298.9 |
300.0 |
C9 |
C10 |
O10 |
C11 |
122.0 |
120.1 |
C9 |
C10 |
O10 |
H10 |
240.9 |
240.0 |
C11 |
C10 |
O10 |
H10 |
118.9 |
120.0 |
O10 |
C10 |
C11 |
H113 |
301.4 |
300.1 |
O10 |
C10 |
C11 |
H112 |
66.7 |
60.0 |
O10 |
C10 |
C11 |
H111 |
176.1 |
179.9 |
H10 |
C10 |
C9 |
H9 |
179.3 |
180.0 |
C9 |
C10 |
H10 |
C11 |
239.6 |
240.0 |
C9 |
C10 |
H10 |
O10 |
119.7 |
120.0 |
C11 |
C10 |
H10 |
O10 |
240.1 |
240.0 |
H10 |
C10 |
C11 |
H113 |
61.0 |
60.1 |
H10 |
C10 |
C11 |
H112 |
186.3 |
180.0 |
H10 |
C10 |
C11 |
H111 |
295.6 |
299.9 |
H10 |
C10 |
O10 |
H1O1 |
299.0 |
180.0 |
H113 |
C11 |
C10 |
O10 |
301.4 |
300.1 |
H113 |
C11 |
C10 |
H10 |
61.0 |
60.1 |
C10 |
C11 |
H113 |
H112 |
125.3 |
119.9 |
C10 |
C11 |
H113 |
H111 |
234.6 |
239.9 |
H112 |
C11 |
H113 |
H111 |
109.4 |
120.0 |
H112 |
C11 |
C10 |
O10 |
66.7 |
60.0 |
H112 |
C11 |
C10 |
H10 |
186.3 |
180.0 |
C10 |
C11 |
H112 |
H113 |
235.3 |
240.1 |
C10 |
C11 |
H112 |
H111 |
117.6 |
120.0 |
H113 |
C11 |
H112 |
H111 |
242.4 |
239.9 |
H111 |
C11 |
C10 |
O10 |
176.1 |
179.9 |
H111 |
C11 |
C10 |
H10 |
295.6 |
299.9 |
C10 |
C11 |
H111 |
H113 |
124.8 |
120.1 |
C10 |
C11 |
H111 |
H112 |
242.4 |
240.1 |
H113 |
C11 |
H111 |
H112 |
117.6 |
120.0 |
H1O1 |
O10 |
C10 |
H10 |
299.0 |
180.0 |