PDB Chemical Component H2B

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for H2B

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.338 1.335
N1 C8A 1.332 1.312
C2 N2 1.334 1.371
C2 N3 1.337 1.319
N2 H22 1.021 0.970
N2 H21 1.020 0.970
N3 C4 1.331 1.340
C4 O4 1.234 1.217
C4 C4A 1.410 1.491
C4A C8A 1.416 1.487
C4A N5 1.332 1.284
C8A N8 1.340 1.367
N5 C6 1.447 1.463
N8 C7 1.386 1.475
N8 H8 1.020 0.970
C6 C7 1.456 1.530
C6 C9 1.521 1.529
C6 H6 1.115 1.090
C7 H71 1.115 1.090
C7 H72 1.115 1.090
C9 O9 1.428 1.428
C9 C10 1.542 1.529
C9 H9 1.116 1.090
O9 H9O1 0.950 0.967
C10 C11 1.529 1.530
C10 O10 1.434 1.428
C10 H10 1.114 1.090
C11 H113 1.114 1.089
C11 H112 1.115 1.091
C11 H111 1.115 1.090
O10 H1O1 0.949 0.966

Bond Angles for H2B

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C8A 120.9 121.3
N1 C2 N2 119.4 117.7
N1 C2 N3 121.4 124.7
N1 C8A C4A 119.7 118.6
N1 C8A N8 119.9 123.2
N2 C2 N3 119.1 117.7
C2 N2 H22 119.4 120.0
C2 N2 H21 108.6 120.0
C2 N3 C4 121.1 121.9
H22 N2 H21 108.6 119.9
N3 C4 O4 122.3 121.5
N3 C4 C4A 119.6 116.9
O4 C4 C4A 118.1 121.5
C4 C4A C8A 117.2 116.6
C4 C4A N5 121.4 122.6
C8A C4A N5 121.4 120.8
C4A C8A N8 120.4 118.2
C4A N5 C6 119.0 122.0
C8A N8 C7 121.7 116.3
C8A N8 H8 107.8 121.9
N5 C6 C7 117.3 110.7
N5 C6 C9 113.4 109.3
N5 C6 H6 113.4 109.2
C7 N8 H8 107.9 121.8
N8 C7 C6 117.1 108.7
N8 C7 H71 109.5 109.6
N8 C7 H72 109.5 109.6
C7 C6 C9 125.3 109.3
C7 C6 H6 84.3 109.2
C6 C7 H71 109.4 109.6
C6 C7 H72 109.4 109.6
C9 C6 H6 93.9 109.2
C6 C9 O9 109.2 109.5
C6 C9 C10 111.6 109.5
C6 C9 H9 108.1 109.4
H71 C7 H72 100.8 109.7
O9 C9 C10 109.3 109.5
O9 C9 H9 110.5 109.5
C9 O9 H9O1 109.2 106.8
C10 C9 H9 108.1 109.4
C9 C10 C11 110.8 109.5
C9 C10 O10 109.7 109.5
C9 C10 H10 108.6 109.4
C11 C10 O10 109.9 109.5
C11 C10 H10 108.4 109.4
C10 C11 H113 110.8 109.5
C10 C11 H112 111.7 109.4
C10 C11 H111 111.8 109.5
O10 C10 H10 109.5 109.5
C10 O10 H1O1 109.7 106.9
H113 C11 H112 111.7 109.4
H113 C11 H111 111.8 109.6
H112 C11 H111 98.6 109.5

Torsion Angles for H2B

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C8A C4A 0.4 358.9
C2 N1 C8A N8 181.0 178.7
N2 C2 N1 N3 181.2 180.0
N1 C2 N2 H22 180.0 180.0
N1 C2 N2 H21 54.8 0.0
N1 C2 N3 C4 359.8 0.9
C8A N1 C2 N2 179.8 179.6
C8A N1 C2 N3 358.6 359.6
C4 C4A C8A N1 2.0 2.0
N1 C8A C4A N5 182.5 181.7
C4A C8A N1 N8 179.4 180.2
N1 C8A N8 C7 181.9 204.7
N1 C8A N8 H8 56.6 24.8
N2 C2 N1 C8A 179.8 179.6
N1 C2 N2 N3 178.9 180.0
N2 C2 N3 C4 178.6 180.9
H22 N2 C2 H21 125.3 179.9
N3 C2 N1 C8A 358.6 359.6
N1 C2 N3 N2 181.2 180.0
N3 C2 N2 H22 1.2 360.0
N3 C2 N2 H21 235.9 180.0
C2 N3 C4 O4 182.2 180.3
C2 N3 C4 C4A 2.7 0.2
H22 N2 C2 N3 1.2 360.0
C2 N2 H22 H21 234.7 180.1
H21 N2 C2 N3 235.9 180.0
C2 N2 H21 H22 131.4 179.9
O4 C4 N3 C4A 179.6 180.1
N3 C4 C4A C8A 356.5 358.5
N3 C4 C4A N5 176.0 178.8
N3 C4 O4 C4A 180.4 179.9
O4 C4 C4A C8A 176.9 178.4
O4 C4 C4A N5 356.4 358.6
N1 C8A C4A C4 2.0 2.0
N3 C4 C4A O4 179.6 180.1
C8A C4A C4 N5 180.6 179.7
C4 C4A C8A N8 181.4 182.2
C4 C4A N5 C6 186.4 181.8
N1 C8A C4A N8 180.6 179.8
C4 C4A C8A N5 179.4 180.3
C8A C4A N5 C6 5.8 2.0
C4A C8A N8 C7 2.5 24.5
C4A C8A N8 H8 237.2 204.5
C4 C4A N5 C8A 180.6 179.7
N5 C4A C8A N8 2.0 1.9
C4A N5 C6 C7 342.8 330.2
C4A N5 C6 C9 184.2 209.9
C4A N5 C6 H6 78.7 90.5
N1 C8A N8 C4A 179.4 180.2
N8 C8A C4A N5 2.0 1.9
C7 N8 C8A H8 125.3 179.9
C8A N8 C7 C6 346.0 309.2
C8A N8 C7 H71 111.3 189.4
C8A N8 C7 H72 220.8 68.9
N8 C7 C6 N5 20.9 51.9
C7 C6 N5 C9 158.6 120.4
C7 C6 N5 H6 264.2 239.8
N5 C6 C7 H71 255.7 171.7
N5 C6 C7 H72 146.2 292.2
C9 C6 N5 H6 105.5 119.4
N5 C6 C9 O9 76.3 180.6
N5 C6 C9 C10 197.2 300.6
N5 C6 C9 H9 316.0 60.6
C8A N8 C7 H8 234.8 180.1
N5 C6 C7 N8 20.9 51.9
N8 C7 C6 C9 176.7 172.2
N8 C7 C6 H6 267.5 291.6
C6 C7 N8 H71 234.8 119.8
C6 C7 N8 H72 125.2 240.3
H71 C7 N8 H72 250.4 120.5
C8A N8 H8 C7 133.1 179.9
H8 N8 C7 C6 111.3 129.1
H8 N8 C7 H71 236.5 9.3
H8 N8 C7 H72 346.1 248.8
N5 C6 C7 C9 204.2 239.6
N5 C6 C7 H6 113.4 120.2
C6 C7 N8 H8 111.3 129.1
N8 C7 C6 H71 125.3 240.2
N8 C7 C6 H72 234.8 119.7
C9 C6 C7 H6 269.2 240.6
C7 C6 C9 O9 279.7 59.3
C7 C6 C9 C10 40.6 179.4
C7 C6 C9 H9 159.4 299.4
H71 C7 C6 H72 109.5 239.5
N5 C6 C9 C7 156.6 121.2
N5 C6 C9 H6 242.4 240.6
C7 C6 C9 H6 85.8 119.4
C9 C6 C7 H71 51.5 292.0
C9 C6 C7 H72 302.0 52.5
O9 C9 C6 C10 239.1 239.9
O9 C9 C6 H9 120.3 120.0
C6 C9 O9 H9O1 180.1 60.1
C10 C9 C6 H9 241.2 240.0
C6 C9 C10 C11 179.2 180.0
C6 C9 C10 O10 57.7 60.0
C6 C9 C10 H10 298.1 300.0
N5 C6 H6 C7 242.7 238.9
N5 C6 H6 C9 117.6 119.4
C7 C6 H6 C9 234.8 240.6
H6 C6 C7 H71 142.3 51.4
H6 C6 C7 H72 32.8 171.9
H6 C6 C9 O9 193.8 299.9
H6 C6 C9 C10 314.8 60.0
H6 C6 C9 H9 73.5 180.0
H71 C7 N8 H8 236.5 9.3
N8 C7 H71 C6 230.4 119.2
N8 C7 H71 H72 115.3 239.6
H71 C7 C6 C9 51.5 292.0
H71 C7 C6 H6 142.3 51.4
C6 C7 H71 H72 244.8 120.4
H72 C7 N8 H8 346.1 248.8
N8 C7 H72 C6 129.6 240.8
N8 C7 H72 H71 244.7 120.4
H72 C7 C6 C9 302.0 52.5
H72 C7 C6 H6 32.8 171.9
C6 C7 H72 H71 115.2 239.6
O9 C9 C6 H6 193.8 299.9
C6 C9 O9 C10 122.3 120.1
C6 C9 O9 H9 241.2 240.0
C10 C9 O9 H9 118.9 120.0
O9 C9 C10 C11 300.1 300.1
O9 C9 C10 O10 178.6 180.0
O9 C9 C10 H10 59.0 60.0
C10 C9 C6 H6 314.8 60.0
C6 C9 C10 O9 239.1 239.9
C6 C9 C10 H9 118.8 120.0
O9 C9 C10 H9 239.7 240.0
C10 C9 O9 H9O1 57.7 300.0
C11 C10 C9 O10 121.5 120.0
C11 C10 C9 H10 241.1 240.1
C9 C10 C11 H113 180.0 180.0
C9 C10 C11 H112 305.3 299.9
C9 C10 C11 H111 54.7 59.9
O10 C10 C9 H10 119.6 120.0
C9 C10 O10 H1O1 180.0 60.0
H9 C9 C6 H6 73.5 180.0
C6 C9 H9 O9 119.5 120.0
C6 C9 H9 C10 239.1 240.0
O9 C9 H9 C10 119.6 120.0
H9 C9 O9 H9O1 298.9 180.0
H9 C9 C10 C11 60.4 60.1
H9 C9 C10 O10 298.9 300.0
H9 C9 C10 H10 179.3 180.0
H9O1 O9 C9 C10 57.7 300.0
H9O1 O9 C9 H9 298.9 180.0
C11 C10 C9 H9 60.4 60.1
C9 C10 C11 O10 238.6 239.9
C9 C10 C11 H10 119.0 119.9
O10 C10 C11 H10 240.4 240.0
C11 C10 O10 H1O1 58.0 299.9
H113 C11 C10 H112 234.8 240.1
H113 C11 C10 H111 125.4 120.1
H112 C11 C10 H111 250.6 240.1
O10 C10 C9 H9 298.9 300.0
C9 C10 O10 C11 122.0 120.1
C9 C10 O10 H10 240.9 240.0
C11 C10 O10 H10 118.9 120.0
O10 C10 C11 H113 301.4 300.1
O10 C10 C11 H112 66.7 60.0
O10 C10 C11 H111 176.1 179.9
H10 C10 C9 H9 179.3 180.0
C9 C10 H10 C11 239.6 240.0
C9 C10 H10 O10 119.7 120.0
C11 C10 H10 O10 240.1 240.0
H10 C10 C11 H113 61.0 60.1
H10 C10 C11 H112 186.3 180.0
H10 C10 C11 H111 295.6 299.9
H10 C10 O10 H1O1 299.0 180.0
H113 C11 C10 O10 301.4 300.1
H113 C11 C10 H10 61.0 60.1
C10 C11 H113 H112 125.3 119.9
C10 C11 H113 H111 234.6 239.9
H112 C11 H113 H111 109.4 120.0
H112 C11 C10 O10 66.7 60.0
H112 C11 C10 H10 186.3 180.0
C10 C11 H112 H113 235.3 240.1
C10 C11 H112 H111 117.6 120.0
H113 C11 H112 H111 242.4 239.9
H111 C11 C10 O10 176.1 179.9
H111 C11 C10 H10 295.6 299.9
C10 C11 H111 H113 124.8 120.1
C10 C11 H111 H112 242.4 240.1
H113 C11 H111 H112 117.6 120.0
H1O1 O10 C10 H10 299.0 180.0