PDB Chemical Component H20

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for H20

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
CA	CB	1.612	1.529
CA	CF	1.649	1.529
CA	O4	1.454	1.429
CA	HA	1.115	1.089
CB	CC	1.521	1.531
CB	HB1	1.115	1.089
CB	HB2	1.115	1.090
CC	CD	1.501	1.530
CC	HC1	1.115	1.089
CC	HC2	1.115	1.090
CD	CE	1.529	1.530
CD	HD1	1.115	1.090
CD	HD2	1.115	1.089
CE	CF	1.586	1.529
CE	HE1	1.115	1.090
CE	HE2	1.114	1.090
CF	HF1	1.115	1.090
CF	HF2	1.115	1.090
N1	C6	1.389	1.344
N1	C2	1.362	1.380
N1	HN1	1.020	0.969
C6	O2	1.244	1.220
C6	C5	1.476	1.403
C5	C4	1.408	1.366
C5	C11	1.540	1.507
C4	O4	1.446	1.352
C4	C3	1.399	1.468
C2	C3	1.428	1.405
C2	C10	1.400	1.391
C3	C7	1.416	1.397
C7	C8	1.397	1.377
C7	H7	1.103	1.080
C8	C9	1.392	1.388
C8	CL	1.679	1.737
C9	C10	1.414	1.378
C9	H9	1.103	1.080
C10	H10	1.103	1.081
C11	C12	1.535	1.530
C11	C13	1.551	1.529
C11	H11	1.115	1.090
C12	H121	1.115	1.090
C12	H122	1.116	1.090
C12	H123	1.115	1.090
C13	H131	1.115	1.089
C13	H132	1.116	1.090
C13	H133	1.115	1.091

Bond Angles for H20

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
CB	CA	CF	110.2	109.5
CB	CA	O4	117.7	109.4
CB	CA	HA	104.4	109.5
CA	CB	CC	113.6	109.4
CA	CB	HB1	110.7	109.5
CA	CB	HB2	110.7	109.5
CF	CA	O4	113.6	109.5
CF	CA	HA	109.5	109.5
CA	CF	CE	116.9	109.5
CA	CF	HF1	109.5	109.5
CA	CF	HF2	109.5	109.5
O4	CA	HA	100.2	109.4
CA	O4	C4	117.9	106.8
CC	CB	HB1	110.7	109.4
CC	CB	HB2	110.7	109.5
CB	CC	CD	109.5	109.4
CB	CC	HC1	112.2	109.4
CB	CC	HC2	112.2	109.5
HB1	CB	HB2	99.6	109.5
CD	CC	HC1	112.2	109.6
CD	CC	HC2	112.2	109.5
CC	CD	CE	110.5	109.5
CC	CD	HD1	111.8	109.4
CC	CD	HD2	111.8	109.6
HC1	CC	HC2	98.2	109.4
CE	CD	HD1	111.9	109.4
CE	CD	HD2	111.8	109.4
CD	CE	CF	113.6	109.5
CD	CE	HE1	110.7	109.5
CD	CE	HE2	110.7	109.4
HD1	CD	HD2	98.6	109.5
CF	CE	HE1	110.7	109.5
CF	CE	HE2	110.7	109.6
CE	CF	HF1	109.5	109.5
CE	CF	HF2	109.5	109.5
HE1	CE	HE2	99.6	109.5
HF1	CF	HF2	100.6	109.4
C6	N1	C2	121.4	121.1
C6	N1	HN1	120.3	119.5
N1	C6	O2	119.8	119.1
N1	C6	C5	118.9	121.9
C2	N1	HN1	118.3	119.5
N1	C2	C3	120.6	119.6
N1	C2	C10	118.6	120.9
O2	C6	C5	121.2	119.1
C6	C5	C4	119.1	120.2
C6	C5	C11	116.3	119.9
C4	C5	C11	123.8	120.0
C5	C4	O4	120.2	120.8
C5	C4	C3	119.3	118.4
C5	C11	C12	114.7	109.5
C5	C11	C13	115.8	109.5
C5	C11	H11	102.9	109.4
O4	C4	C3	120.5	120.8
C4	C3	C2	120.6	118.9
C4	C3	C7	121.3	121.1
C3	C2	C10	120.5	119.5
C2	C3	C7	117.8	119.9
C2	C10	C9	120.2	119.9
C2	C10	H10	119.4	120.0
C3	C7	C8	121.2	119.6
C3	C7	H7	120.0	120.2
C8	C7	H7	118.7	120.2
C7	C8	C9	120.5	120.4
C7	C8	CL	119.9	119.8
C9	C8	CL	119.6	119.8
C8	C9	C10	119.7	120.6
C8	C9	H9	119.4	119.7
C10	C9	H9	120.9	119.7
C9	C10	H10	120.4	120.1
C12	C11	C13	115.3	109.5
C12	C11	H11	103.5	109.4
C11	C12	H121	110.3	109.5
C11	C12	H122	114.7	109.5
C11	C12	H123	110.3	109.5
C13	C11	H11	102.0	109.5
C11	C13	H131	109.9	109.5
C11	C13	H132	115.8	109.5
C11	C13	H133	109.9	109.5
H121	C12	H122	110.3	109.4
H121	C12	H123	99.9	109.5
H122	C12	H123	110.3	109.4
H131	C13	H132	110.0	109.5
H131	C13	H133	100.3	109.4
H132	C13	H133	109.9	109.4

Torsion Angles for H20

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
CF	CA	CB	O4	132.5	120.0
CF	CA	CB	HA	242.5	239.9
CB	CA	CF	CE	28.5	60.1
CB	CA	CF	HF1	263.3	180.1
CB	CA	CF	HF2	153.8	300.0
O4	CA	CB	HA	110.0	119.9
CB	CA	O4	C4	257.0	268.9
CC	CB	CA	HB1	125.3	240.0
CC	CB	CA	HB2	234.7	120.0
CA	CB	CC	CD	63.6	60.0
CA	CB	CC	HC1	298.3	300.0
CA	CB	CC	HC2	188.8	180.0
HB1	CB	CA	HB2	109.4	239.9
CB	CA	CF	O4	225.4	240.1
CB	CA	CF	HA	114.3	120.1
CF	CA	CB	CC	317.8	300.0
CF	CA	CB	HB1	192.5	59.9
CF	CA	CB	HB2	83.1	180.0
O4	CA	CF	HA	248.9	240.0
CF	CA	O4	C4	126.0	149.0
CD	CE	CF	CA	324.8	300.0
CA	CF	CE	HE1	90.0	59.9
CA	CF	CE	HE2	199.5	180.0
CE	CF	CA	HF1	125.3	240.0
CE	CF	CA	HF2	234.8	120.0
HF1	CF	CA	HF2	109.5	240.0
CB	CA	O4	CF	131.0	120.0
CB	CA	O4	HA	247.6	240.0
O4	CA	CB	CC	185.3	180.0
O4	CA	CB	HB1	60.0	300.0
O4	CA	CB	HB2	310.6	60.0
CF	CA	O4	HA	116.6	120.1
O4	CA	CF	CE	163.1	180.0
O4	CA	CF	HF1	37.8	300.0
O4	CA	CF	HF2	288.3	60.0
C5	C4	O4	CA	104.7	112.3
CA	O4	C4	C3	283.8	292.2
CB	CA	HA	CF	242.0	240.0
CB	CA	HA	O4	122.3	119.9
HA	CA	CB	CC	75.3	60.1
HA	CA	CB	HB1	310.0	180.0
HA	CA	CB	HB2	200.6	300.1
CF	CA	HA	O4	240.3	239.9
HA	CA	CF	CE	274.2	300.0
HA	CA	CF	HF1	148.9	60.0
HA	CA	CF	HF2	39.4	180.0
HA	CA	O4	C4	9.4	28.9
CC	CB	CA	CF	317.8	300.0
CC	CB	CA	O4	185.3	180.0
CC	CB	CA	HA	75.3	60.1
CA	CB	CC	HB1	234.7	120.0
CA	CB	CC	HB2	125.3	240.0
HB1	CB	CC	HB2	250.6	120.0
CD	CC	CB	HC1	125.3	120.1
CD	CC	CB	HC2	234.7	240.0
CB	CC	CD	CE	291.3	300.0
CB	CC	CD	HD1	166.0	180.1
CB	CC	CD	HD2	56.5	60.0
HC1	CC	CB	HC2	109.5	120.0
HB1	CB	CA	CF	192.5	59.9
HB1	CB	CA	O4	60.0	300.0
HB1	CB	CA	HA	310.0	180.0
CA	CB	HB1	CC	126.9	240.0
CA	CB	HB1	HB2	243.4	120.1
CC	CB	HB1	HB2	116.5	240.0
HB1	CB	CC	CD	188.8	300.0
HB1	CB	CC	HC1	63.6	179.9
HB1	CB	CC	HC2	314.1	60.0
HB2	CB	CA	CF	83.1	180.0
HB2	CB	CA	O4	310.6	60.0
HB2	CB	CA	HA	200.6	300.1
CA	CB	HB2	CC	233.1	120.0
CA	CB	HB2	HB1	116.6	239.9
CC	CB	HB2	HB1	243.5	119.9
HB2	CB	CC	CD	298.3	180.0
HB2	CB	CC	HC1	173.0	60.0
HB2	CB	CC	HC2	63.5	300.0
CD	CC	CB	HB1	188.8	300.0
CD	CC	CB	HB2	298.3	180.0
CB	CC	CD	HC1	234.7	240.0
CB	CC	CD	HC2	125.3	120.0
HC1	CC	CD	HC2	250.5	240.0
CE	CD	CC	HD1	125.3	119.9
CE	CD	CC	HD2	234.7	240.0
CC	CD	CE	CF	54.2	60.0
CC	CD	CE	HE1	288.9	300.1
CC	CD	CE	HE2	179.4	180.1
HD1	CD	CC	HD2	109.4	120.1
HC1	CC	CB	HB1	63.6	179.9
HC1	CC	CB	HB2	173.0	60.0
CB	CC	HC1	CD	123.8	120.0
CB	CC	HC1	HC2	241.9	240.0
CD	CC	HC1	HC2	118.1	120.0
HC1	CC	CD	CE	56.6	60.0
HC1	CC	CD	HD1	291.3	300.1
HC1	CC	CD	HD2	181.8	180.0
HC2	CC	CB	HB1	314.1	60.0
HC2	CC	CB	HB2	63.5	300.0
CB	CC	HC2	CD	236.3	240.1
CB	CC	HC2	HC1	118.1	120.0
CD	CC	HC2	HC1	241.9	239.9
HC2	CC	CD	CE	166.0	180.0
HC2	CC	CD	HD1	40.7	60.1
HC2	CC	CD	HD2	291.3	300.0
CA	CF	CE	CD	324.8	300.0
CE	CD	CC	HC1	56.6	60.0
CE	CD	CC	HC2	166.0	180.0
CC	CD	CE	HD1	234.7	240.1
CC	CD	CE	HD2	125.3	120.1
HD1	CD	CE	HD2	250.5	240.0
CF	CE	CD	HE1	125.3	120.0
CF	CE	CD	HE2	234.7	239.9
CD	CE	CF	HF1	90.1	180.0
CD	CE	CF	HF2	199.5	60.0
HE1	CE	CD	HE2	109.5	120.0
HD1	CD	CC	HC1	291.3	300.1
HD1	CD	CC	HC2	40.7	60.1
CC	CD	HD1	CE	124.5	119.9
CC	CD	HD1	HD2	242.3	239.9
CE	CD	HD1	HD2	117.8	120.0
HD1	CD	CE	CF	179.5	179.9
HD1	CD	CE	HE1	54.2	60.0
HD1	CD	CE	HE2	304.7	300.0
HD2	CD	CC	HC1	181.8	180.0
HD2	CD	CC	HC2	291.3	300.0
CC	CD	HD2	CE	235.5	240.0
CC	CD	HD2	HD1	117.7	120.0
CE	CD	HD2	HD1	242.2	240.0
HD2	CD	CE	CF	288.9	299.9
HD2	CD	CE	HE1	163.7	180.0
HD2	CD	CE	HE2	54.2	60.0
CE	CF	CA	O4	163.1	180.0
CE	CF	CA	HA	274.2	300.0
CA	CF	CE	HF1	234.7	120.0
CA	CF	CE	HF2	125.2	239.9
CF	CE	CD	HD1	179.5	179.9
CF	CE	CD	HD2	288.9	299.9
CD	CE	CF	HE1	234.7	240.0
CD	CE	CF	HE2	125.2	120.0
HE1	CE	CF	HE2	250.5	240.0
HF1	CF	CE	HF2	250.5	119.9
HE1	CE	CD	HD1	54.2	60.0
HE1	CE	CD	HD2	163.7	180.0
CD	CE	HE1	CF	126.9	120.0
CD	CE	HE1	HE2	243.5	240.1
CF	CE	HE1	HE2	116.6	120.1
HE1	CE	CF	HF1	215.3	299.9
HE1	CE	CF	HF2	324.8	180.0
HE2	CE	CD	HD1	304.7	300.0
HE2	CE	CD	HD2	54.2	60.0
CD	CE	HE2	CF	233.1	240.0
CD	CE	HE2	HE1	116.5	120.0
CF	CE	HE2	HE1	243.4	240.0
HE2	CE	CF	HF1	324.8	60.0
HE2	CE	CF	HF2	74.3	300.0
HF1	CF	CA	O4	37.8	300.0
HF1	CF	CA	HA	148.9	60.0
CA	CF	HF1	CE	129.4	240.0
CA	CF	HF1	HF2	244.7	120.0
HF1	CF	CE	HE1	215.3	299.9
HF1	CF	CE	HE2	324.8	60.0
CE	CF	HF1	HF2	115.3	240.1
HF2	CF	CA	O4	288.3	60.0
HF2	CF	CA	HA	39.4	180.0
CA	CF	HF2	CE	230.6	120.1
CA	CF	HF2	HF1	115.3	240.0
HF2	CF	CE	HE1	324.8	180.0
HF2	CF	CE	HE2	74.3	300.0
CE	CF	HF2	HF1	244.7	120.0
C2	N1	C6	HN1	180.0	180.3
C6	N1	C2	C3	1.0	359.7
C6	N1	C2	C10	186.5	179.7
O2	C6	N1	C5	182.1	179.4
N1	C6	C5	C4	357.7	359.4
N1	C6	C5	C11	168.0	179.7
C6	N1	C2	HN1	180.0	179.7
C2	N1	C6	O2	182.2	180.0
C2	N1	C6	C5	0.1	0.6
C4	C3	C2	N1	359.9	0.1
C3	C2	N1	C10	174.5	180.0
N1	C2	C3	C7	185.4	180.0
N1	C2	C10	C9	174.4	179.9
N1	C2	C10	H10	354.5	0.0
C6	N1	HN1	C2	180.0	180.3
HN1	N1	C6	O2	2.2	359.7
HN1	N1	C6	C5	180.1	180.3
HN1	N1	C2	C3	181.0	179.9
HN1	N1	C2	C10	6.5	360.0
O2	C6	N1	C2	182.2	180.0
O2	C6	N1	HN1	2.2	359.7
N1	C6	O2	C5	177.9	180.6
O2	C6	C5	C4	175.6	180.0
O2	C6	C5	C11	345.9	0.3
C5	C6	N1	C2	0.1	0.6
C5	C6	N1	HN1	180.1	180.3
N1	C6	C5	O2	182.1	179.4
C4	C5	C6	C11	189.7	179.7
C6	C5	C4	O4	182.3	180.2
C6	C5	C4	C3	3.2	0.3
C6	C5	C11	C12	93.4	297.7
C6	C5	C11	C13	231.4	57.7
C6	C5	C11	H11	341.7	177.8
CA	O4	C4	C5	104.7	112.3
C6	C5	C4	C11	169.5	180.3
C4	C5	C11	C12	263.1	118.0
C4	C5	C11	C13	41.1	238.0
C4	C5	C11	H11	151.5	358.1
O4	C4	C5	C3	179.1	179.9
C5	C4	C3	C2	357.9	359.9
C5	C4	C3	C7	172.2	180.0
C6	C5	C11	C4	190.2	179.7
C11	C5	C4	O4	12.8	359.9
C11	C5	C4	C3	193.7	180.0
C12	C11	C5	C13	222.0	240.0
C12	C11	C5	H11	111.7	119.9
C5	C11	C12	H121	54.7	177.5
C5	C11	C12	H122	180.0	297.5
C5	C11	C12	H123	305.3	57.5
C13	C11	C5	H11	249.7	239.9
C5	C11	C13	H131	54.7	299.9
C5	C11	C13	H132	180.0	60.0
C5	C11	C13	H133	305.2	180.0
C4	O4	CA	HA	9.4	28.9
O4	C4	C5	C11	12.8	359.9
C5	C4	O4	C3	180.9	180.1
O4	C4	C3	C2	178.8	180.0
O4	C4	C3	C7	353.1	0.1
N1	C2	C3	C4	359.9	0.1
C3	C4	C5	C11	193.7	180.0
C5	C4	C3	O4	179.1	179.9
C4	C3	C2	C10	174.4	180.1
C2	C3	C4	C7	185.7	179.9
C4	C3	C7	C8	185.9	179.9
C4	C3	C7	H7	5.9	359.8
C3	C2	N1	HN1	181.0	179.9
N1	C2	C3	C10	185.6	180.0
C4	C3	C2	C7	174.5	180.1
C3	C2	C10	C9	359.9	360.0
C3	C2	C10	H10	179.9	180.1
C2	C3	C7	C8	0.3	0.0
C2	C3	C7	H7	180.4	179.9
C10	C2	N1	HN1	6.5	360.0
N1	C2	C10	C3	174.5	180.0
C10	C2	C3	C7	359.9	360.0
C8	C9	C10	C2	0.1	0.1
C2	C10	C9	H9	180.1	180.0
C9	C10	C2	H10	180.0	179.9
C4	C3	C7	C2	185.6	179.9
C7	C3	C2	C10	359.9	360.0
C8	C7	C3	H7	180.0	180.1
C3	C7	C8	C9	359.7	0.1
C3	C7	C8	CL	180.1	180.0
C3	C7	C8	H7	180.0	179.9
C9	C8	C7	CL	179.6	180.1
C7	C8	C9	C10	0.1	359.9
C7	C8	C9	H9	180.1	180.0
C3	C7	H7	C8	180.0	180.1
H7	C7	C8	C9	179.7	180.1
H7	C7	C8	CL	0.1	0.0
C2	C10	C9	C8	0.1	0.1
C9	C8	C7	H7	179.7	180.1
C7	C8	C9	CL	180.4	179.9
C10	C9	C8	H9	180.0	179.9
C8	C9	C10	H10	180.1	180.0
CL	C8	C7	H7	0.1	0.0
C7	C8	CL	C9	179.6	180.1
CL	C8	C9	C10	179.6	180.0
CL	C8	C9	H9	359.6	0.1
C2	C10	C9	H10	180.0	180.1
C10	C9	C8	CL	179.6	180.0
C8	C9	C10	H9	180.0	180.1
H9	C9	C8	CL	359.6	0.1
C8	C9	H9	C10	180.0	179.9
H9	C9	C10	H10	0.1	359.9
C2	C10	H10	C9	180.0	179.9
H10	C10	C9	H9	0.1	359.9
C5	C11	C12	C13	138.2	120.0
C5	C11	C12	H11	248.7	240.1
C13	C11	C12	H11	110.5	120.0
C12	C11	C13	H131	192.5	60.0
C12	C11	C13	H132	317.8	180.1
C12	C11	C13	H133	83.0	300.0
H121	C12	C11	H122	234.7	240.0
H121	C12	C11	H123	109.5	120.0
H122	C12	C11	H123	234.7	240.0
C5	C11	C13	C12	222.2	240.0
C5	C11	C13	H11	110.9	120.0
C12	C11	C13	H11	248.6	240.0
C13	C11	C12	H121	276.5	57.4
C13	C11	C12	H122	41.8	177.5
C13	C11	C12	H123	167.0	297.4
H131	C13	C11	H132	234.7	239.9
H131	C13	C11	H133	109.5	120.0
H132	C13	C11	H133	234.8	240.1
C5	C11	H11	C12	119.7	119.9
C5	C11	H11	C13	239.7	240.0
C12	C11	H11	C13	120.0	120.0
H11	C11	C12	H121	166.0	297.4
H11	C11	C12	H122	291.3	57.4
H11	C11	C12	H123	56.5	177.4
H11	C11	C13	H131	303.9	179.9
H11	C11	C13	H132	69.2	300.0
H11	C11	C13	H133	194.4	59.9
H121	C12	C11	C13	276.5	57.4
H121	C12	C11	H11	166.0	297.4
C11	C12	H121	H122	127.7	120.1
C11	C12	H121	H123	243.8	240.0
H122	C12	H121	H123	116.2	119.9
H122	C12	C11	C13	41.8	177.5
H122	C12	C11	H11	291.3	57.4
C11	C12	H122	H121	234.7	239.9
C11	C12	H122	H123	125.3	120.0
H121	C12	H122	H123	250.5	240.1
H123	C12	C11	C13	167.0	297.4
H123	C12	C11	H11	56.5	177.4
C11	C12	H123	H121	116.1	120.0
C11	C12	H123	H122	232.3	240.0
H121	C12	H123	H122	116.1	119.9
H131	C13	C11	H11	303.9	179.9
C11	C13	H131	H132	128.5	120.1
C11	C13	H131	H133	244.3	240.0
H132	C13	H131	H133	115.7	119.9
H132	C13	C11	H11	69.2	300.0
C11	C13	H132	H131	234.7	239.9
C11	C13	H132	H133	125.2	119.9
H131	C13	H132	H133	250.5	240.1
H133	C13	C11	H11	194.4	59.9
C11	C13	H133	H131	115.7	120.1
C11	C13	H133	H132	231.5	240.1
H131	C13	H133	H132	115.8	120.0