Atom Nomenclature for H1I

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for H1I

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
N7 N7
C8 C8
S9 S9
N10 N10
N11 N11
C12 C12
C13 C13
C14 C14
C15 C15
C16 C16
C17 C17
O18 O18
C19 C19
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
S25 S25
O25 O25
O26 O26
N26 N26
C27 C27
O27 O27
C28 C28
C29 C29
C30 C30
C31 C31
C32 C32
C33 C33
C34 C34
C35 C35
C36 C36
C37 C37
C38 C38
H1 H1
H2 H2
H6 H6
H3 H3
H10 H10
H131 H131
H132 H132
H133 H133
H15 H15
H16 H16
H20 H20
H24 H24
H21 H21
H22 H22
H26 H26
H281 H281
H282 H282
H291 H291
H292 H292
H301 H301
H302 H302
H311 H311
H312 H312
H321 H321
H322 H322
H34 H34
H38 H38
H35 H35
H36 H36
H37 H37