PDB Chemical Component H12

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for H12

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
CA	CB	1.603	1.529
CA	CF	1.623	1.530
CA	O4	1.431	1.429
CA	HA	1.115	1.089
CB	CC	1.551	1.531
CB	HB1	1.115	1.091
CB	HB2	1.115	1.090
CC	CD	1.541	1.529
CC	HC1	1.115	1.090
CC	HC2	1.115	1.089
CD	CE	1.548	1.530
CD	HD1	1.115	1.091
CD	HD2	1.115	1.089
CE	CF	1.555	1.529
CE	HE1	1.115	1.090
CE	HE2	1.115	1.089
CF	HF1	1.115	1.090
CF	HF2	1.115	1.089
N1	C6	1.400	1.344
N1	C2	1.382	1.379
N1	HN1	1.020	0.970
C6	O2	1.240	1.220
C6	C5	1.469	1.404
C5	C4	1.393	1.366
C5	C11	1.526	1.507
C4	O4	1.409	1.352
C4	C3	1.390	1.468
C2	C3	1.431	1.405
C2	C10	1.397	1.391
C3	C7	1.424	1.397
C7	C8	1.399	1.377
C7	H7	1.103	1.079
C8	C9	1.399	1.389
C8	CL	1.699	1.736
C9	C10	1.430	1.378
C9	H9	1.103	1.080
C10	H10	1.103	1.080
C11	C12	1.520	1.530
C11	H111	1.116	1.089
C11	H112	1.115	1.089
C12	C13	1.523	1.530
C12	H121	1.115	1.090
C12	H122	1.115	1.090
C13	H131	1.115	1.090
C13	H132	1.115	1.089
C13	H133	1.115	1.089

Bond Angles for H12

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
CB	CA	CF	110.4	109.4
CB	CA	O4	117.7	109.5
CB	CA	HA	104.2	109.5
CA	CB	CC	113.8	109.5
CA	CB	HB1	110.6	109.5
CA	CB	HB2	110.6	109.5
CF	CA	O4	113.3	109.4
CF	CA	HA	109.7	109.5
CA	CF	CE	116.2	109.5
CA	CF	HF1	109.8	109.4
CA	CF	HF2	109.7	109.5
O4	CA	HA	100.6	109.5
CA	O4	C4	117.1	106.8
CC	CB	HB1	110.6	109.4
CC	CB	HB2	110.6	109.5
CB	CC	CD	110.6	109.4
CB	CC	HC1	111.8	109.4
CB	CC	HC2	111.8	109.5
HB1	CB	HB2	99.7	109.5
CD	CC	HC1	111.8	109.6
CD	CC	HC2	111.8	109.5
CC	CD	CE	110.5	109.5
CC	CD	HD1	111.9	109.4
CC	CD	HD2	111.8	109.5
HC1	CC	HC2	98.6	109.4
CE	CD	HD1	111.8	109.5
CE	CD	HD2	111.8	109.5
CD	CE	CF	112.3	109.5
CD	CE	HE1	111.2	109.5
CD	CE	HE2	111.1	109.5
HD1	CD	HD2	98.5	109.5
CF	CE	HE1	111.2	109.5
CF	CE	HE2	111.2	109.5
CE	CF	HF1	109.8	109.5
CE	CF	HF2	109.7	109.5
HE1	CE	HE2	99.2	109.5
HF1	CF	HF2	100.4	109.4
C6	N1	C2	120.8	121.2
C6	N1	HN1	120.3	119.4
N1	C6	O2	120.9	119.1
N1	C6	C5	118.3	121.8
C2	N1	HN1	118.9	119.5
N1	C2	C3	120.6	119.6
N1	C2	C10	119.3	120.9
O2	C6	C5	120.8	119.1
C6	C5	C4	120.0	120.1
C6	C5	C11	118.5	119.9
C4	C5	C11	120.9	120.0
C5	C4	O4	118.5	120.8
C5	C4	C3	120.2	118.4
C5	C11	C12	110.5	109.5
C5	C11	H111	111.8	109.4
C5	C11	H112	111.8	109.5
O4	C4	C3	121.2	120.8
C4	C3	C2	120.0	118.9
C4	C3	C7	121.4	121.1
C3	C2	C10	120.1	119.5
C2	C3	C7	118.6	120.0
C2	C10	C9	120.2	119.9
C2	C10	H10	118.7	120.0
C3	C7	C8	121.2	119.6
C3	C7	H7	120.3	120.2
C8	C7	H7	118.5	120.2
C7	C8	C9	119.9	120.4
C7	C8	CL	120.2	119.8
C9	C8	CL	119.9	119.8
C8	C9	C10	120.1	120.7
C8	C9	H9	118.9	119.7
C10	C9	H9	121.0	119.6
C9	C10	H10	121.1	120.1
C12	C11	H111	111.8	109.5
C12	C11	H112	111.8	109.5
C11	C12	C13	111.6	109.5
C11	C12	H121	111.4	109.5
C11	C12	H122	111.4	109.4
H111	C11	H112	98.6	109.5
C13	C12	H121	111.4	109.5
C13	C12	H122	111.4	109.5
C12	C13	H131	111.4	109.5
C12	C13	H132	111.6	109.5
C12	C13	H133	111.4	109.4
H121	C12	H122	98.9	109.5
H131	C13	H132	111.4	109.5
H131	C13	H133	98.9	109.5
H132	C13	H133	111.4	109.5

Torsion Angles for H12

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
CF	CA	CB	O4	132.1	119.9
CF	CA	CB	HA	242.4	239.9
CB	CA	CF	CE	39.3	60.1
CB	CA	CF	HF1	274.0	180.1
CB	CA	CF	HF2	164.6	300.0
O4	CA	CB	HA	110.3	120.0
CB	CA	O4	C4	264.9	270.0
CC	CB	CA	HB1	125.3	240.0
CC	CB	CA	HB2	234.7	120.0
CA	CB	CC	CD	57.5	60.0
CA	CB	CC	HC1	292.3	300.0
CA	CB	CC	HC2	182.8	180.0
HB1	CB	CA	HB2	109.5	239.9
CB	CA	CF	O4	225.6	240.1
CB	CA	CF	HA	114.2	120.1
CF	CA	CB	CC	315.5	300.0
CF	CA	CB	HB1	190.2	59.9
CF	CA	CB	HB2	80.8	180.0
O4	CA	CF	HA	248.6	240.0
CF	CA	O4	C4	134.1	150.1
CD	CE	CF	CA	313.7	300.0
CA	CF	CE	HE1	78.9	60.0
CA	CF	CE	HE2	188.4	180.0
CE	CF	CA	HF1	125.3	240.0
CE	CF	CA	HF2	234.8	120.0
HF1	CF	CA	HF2	109.5	240.0
CB	CA	O4	CF	130.8	119.9
CB	CA	O4	HA	247.7	240.0
O4	CA	CB	CC	183.4	180.0
O4	CA	CB	HB1	58.1	300.0
O4	CA	CB	HB2	308.6	60.1
CF	CA	O4	HA	116.9	120.0
O4	CA	CF	CE	173.7	180.0
O4	CA	CF	HF1	48.4	300.0
O4	CA	CF	HF2	299.0	60.0
C5	C4	O4	CA	105.4	112.5
CA	O4	C4	C3	281.3	292.5
CB	CA	HA	CF	241.9	240.0
CB	CA	HA	O4	122.3	120.0
HA	CA	CB	CC	73.1	60.0
HA	CA	CB	HB1	307.8	180.0
HA	CA	CB	HB2	198.4	300.1
CF	CA	HA	O4	240.4	240.0
HA	CA	CF	CE	285.2	300.0
HA	CA	CF	HF1	159.9	60.0
HA	CA	CF	HF2	50.4	180.0
HA	CA	O4	C4	17.2	30.1
CC	CB	CA	CF	315.5	300.0
CC	CB	CA	O4	183.4	180.0
CC	CB	CA	HA	73.1	60.0
CA	CB	CC	HB1	234.7	120.0
CA	CB	CC	HB2	125.3	240.0
HB1	CB	CC	HB2	250.5	120.0
CD	CC	CB	HC1	125.3	120.1
CD	CC	CB	HC2	234.7	240.0
CB	CC	CD	CE	297.3	300.0
CB	CC	CD	HD1	172.0	180.0
CB	CC	CD	HD2	62.6	60.0
HC1	CC	CB	HC2	109.4	119.9
HB1	CB	CA	CF	190.2	59.9
HB1	CB	CA	O4	58.1	300.0
HB1	CB	CA	HA	307.8	180.0
CA	CB	HB1	CC	127.1	240.0
CA	CB	HB1	HB2	243.5	120.0
CC	CB	HB1	HB2	116.5	240.0
HB1	CB	CC	CD	182.8	300.0
HB1	CB	CC	HC1	57.5	180.0
HB1	CB	CC	HC2	308.1	60.0
HB2	CB	CA	CF	80.8	180.0
HB2	CB	CA	O4	308.6	60.1
HB2	CB	CA	HA	198.4	300.1
CA	CB	HB2	CC	232.9	120.0
CA	CB	HB2	HB1	116.5	239.9
CC	CB	HB2	HB1	243.5	120.0
HB2	CB	CC	CD	292.3	180.0
HB2	CB	CC	HC1	167.0	60.0
HB2	CB	CC	HC2	57.5	300.0
CD	CC	CB	HB1	182.8	300.0
CD	CC	CB	HB2	292.3	180.0
CB	CC	CD	HC1	234.7	240.0
CB	CC	CD	HC2	125.3	120.0
HC1	CC	CD	HC2	250.6	240.0
CE	CD	CC	HD1	125.3	120.0
CE	CD	CC	HD2	234.7	240.0
CC	CD	CE	CF	56.9	60.0
CC	CD	CE	HE1	291.7	300.0
CC	CD	CE	HE2	182.2	180.1
HD1	CD	CC	HD2	109.5	120.0
HC1	CC	CB	HB1	57.5	180.0
HC1	CC	CB	HB2	167.0	60.0
CB	CC	HC1	CD	124.6	120.0
CB	CC	HC1	HC2	242.3	240.0
CD	CC	HC1	HC2	117.7	120.0
HC1	CC	CD	CE	62.6	60.0
HC1	CC	CD	HD1	297.3	300.0
HC1	CC	CD	HD2	187.9	180.0
HC2	CC	CB	HB1	308.1	60.0
HC2	CC	CB	HB2	57.5	300.0
CB	CC	HC2	CD	235.4	240.0
CB	CC	HC2	HC1	117.7	119.9
CD	CC	HC2	HC1	242.3	239.9
HC2	CC	CD	CE	172.0	180.0
HC2	CC	CD	HD1	46.7	60.0
HC2	CC	CD	HD2	297.3	300.0
CA	CF	CE	CD	313.7	300.0
CE	CD	CC	HC1	62.6	60.0
CE	CD	CC	HC2	172.0	180.0
CC	CD	CE	HD1	234.7	240.1
CC	CD	CE	HD2	125.3	120.1
HD1	CD	CE	HD2	250.6	240.0
CF	CE	CD	HE1	125.3	120.0
CF	CE	CD	HE2	234.7	240.0
CD	CE	CF	HF1	78.9	180.0
CD	CE	CF	HF2	188.4	60.0
HE1	CE	CD	HE2	109.4	120.0
HD1	CD	CC	HC1	297.3	300.0
HD1	CD	CC	HC2	46.7	60.0
CC	CD	HD1	CE	124.5	120.0
CC	CD	HD1	HD2	242.3	240.0
CE	CD	HD1	HD2	117.7	120.0
HD1	CD	CE	CF	182.2	180.0
HD1	CD	CE	HE1	57.0	60.0
HD1	CD	CE	HE2	307.5	300.0
HD2	CD	CC	HC1	187.9	180.0
HD2	CD	CC	HC2	297.3	300.0
CC	CD	HD2	CE	235.5	240.0
CC	CD	HD2	HD1	117.8	120.0
CE	CD	HD2	HD1	242.3	240.0
HD2	CD	CE	CF	291.7	300.0
HD2	CD	CE	HE1	166.4	180.0
HD2	CD	CE	HE2	57.0	60.0
CE	CF	CA	O4	173.7	180.0
CE	CF	CA	HA	285.2	300.0
CA	CF	CE	HF1	234.7	119.9
CA	CF	CE	HF2	125.2	239.9
CF	CE	CD	HD1	182.2	180.0
CF	CE	CD	HD2	291.7	300.0
CD	CE	CF	HE1	234.7	240.0
CD	CE	CF	HE2	125.3	120.0
HE1	CE	CF	HE2	250.5	240.0
HF1	CF	CE	HF2	250.5	120.0
HE1	CE	CD	HD1	57.0	60.0
HE1	CE	CD	HD2	166.4	180.0
CD	CE	HE1	CF	125.9	120.0
CD	CE	HE1	HE2	243.0	240.0
CF	CE	HE1	HE2	117.1	120.0
HE1	CE	CF	HF1	204.2	300.0
HE1	CE	CF	HF2	313.7	180.0
HE2	CE	CD	HD1	307.5	300.0
HE2	CE	CD	HD2	57.0	60.0
CD	CE	HE2	CF	234.1	240.0
CD	CE	HE2	HE1	117.1	120.0
CF	CE	HE2	HE1	242.9	240.0
HE2	CE	CF	HF1	313.7	60.0
HE2	CE	CF	HF2	63.2	300.0
HF1	CF	CA	O4	48.4	300.0
HF1	CF	CA	HA	159.9	60.0
CA	CF	HF1	CE	128.9	240.0
CA	CF	HF1	HF2	244.5	120.0
HF1	CF	CE	HE1	204.2	300.0
HF1	CF	CE	HE2	313.7	60.0
CE	CF	HF1	HF2	115.5	240.0
HF2	CF	CA	O4	299.0	60.0
HF2	CF	CA	HA	50.4	180.0
CA	CF	HF2	CE	231.1	120.0
CA	CF	HF2	HF1	115.6	240.1
HF2	CF	CE	HE1	313.7	180.0
HF2	CF	CE	HE2	63.2	300.0
CE	CF	HF2	HF1	244.4	120.0
C2	N1	C6	HN1	180.0	180.3
C6	N1	C2	C3	1.2	359.7
C6	N1	C2	C10	181.3	179.7
O2	C6	N1	C5	182.2	179.4
N1	C6	C5	C4	358.6	359.4
N1	C6	C5	C11	170.6	179.7
C6	N1	C2	HN1	180.0	179.7
C2	N1	C6	O2	182.3	180.0
C2	N1	C6	C5	0.1	0.6
C4	C3	C2	N1	358.8	360.0
C3	C2	N1	C10	179.9	180.0
N1	C2	C3	C7	180.1	180.0
N1	C2	C10	C9	180.0	180.0
N1	C2	C10	H10	360.0	0.1
C6	N1	HN1	C2	180.0	180.3
HN1	N1	C6	O2	2.2	359.6
HN1	N1	C6	C5	180.0	180.3
HN1	N1	C2	C3	181.3	180.0
HN1	N1	C2	C10	1.3	360.0
O2	C6	N1	C2	182.3	180.0
O2	C6	N1	HN1	2.2	359.6
N1	C6	O2	C5	177.7	180.6
O2	C6	C5	C4	176.4	180.0
O2	C6	C5	C11	348.4	0.3
C5	C6	N1	C2	0.1	0.6
C5	C6	N1	HN1	180.0	180.3
N1	C6	C5	O2	182.2	179.4
C4	C5	C6	C11	188.0	179.7
C6	C5	C4	O4	177.4	180.2
C6	C5	C4	C3	1.4	0.3
C6	C5	C11	C12	279.0	274.4
C6	C5	C11	H111	153.7	154.4
C6	C5	C11	H112	44.2	34.4
CA	O4	C4	C5	105.4	112.5
C6	C5	C4	C11	171.8	180.3
C4	C5	C11	C12	90.9	94.7
C4	C5	C11	H111	325.6	334.7
C4	C5	C11	H112	216.1	214.7
O4	C4	C5	C3	176.0	179.9
C5	C4	C3	C2	359.9	360.0
C5	C4	C3	C7	178.5	180.0
C6	C5	C11	C4	188.1	179.7
C11	C5	C4	O4	5.6	359.9
C11	C5	C4	C3	189.6	180.0
C12	C11	C5	H111	125.3	120.0
C12	C11	C5	H112	234.7	240.0
C5	C11	C12	C13	266.8	184.8
C5	C11	C12	H121	141.5	64.8
C5	C11	C12	H122	32.1	304.8
H111	C11	C5	H112	109.5	120.0
C4	O4	CA	HA	17.2	30.1
O4	C4	C5	C11	5.6	359.9
C5	C4	O4	C3	184.1	180.1
O4	C4	C3	C2	184.0	180.1
O4	C4	C3	C7	2.6	0.1
N1	C2	C3	C4	358.8	360.0
C3	C4	C5	C11	189.6	180.0
C5	C4	C3	O4	175.9	179.9
C4	C3	C2	C10	178.7	180.0
C2	C3	C4	C7	181.4	180.0
C4	C3	C7	C8	180.9	180.0
C4	C3	C7	H7	0.9	359.8
C3	C2	N1	HN1	181.3	180.0
N1	C2	C3	C10	180.1	180.0
C4	C3	C2	C7	178.6	180.0
C3	C2	C10	C9	0.0	360.0
C3	C2	C10	H10	180.0	180.0
C2	C3	C7	C8	359.5	0.0
C2	C3	C7	H7	179.5	179.9
C10	C2	N1	HN1	1.3	360.0
N1	C2	C10	C3	179.9	180.0
C10	C2	C3	C7	0.1	0.0
C8	C9	C10	C2	0.3	360.0
C2	C10	C9	H9	180.3	180.1
C9	C10	C2	H10	180.0	180.0
C4	C3	C7	C2	181.4	180.0
C7	C3	C2	C10	0.1	0.0
C8	C7	C3	H7	180.0	180.2
C3	C7	C8	C9	0.8	360.0
C3	C7	C8	CL	182.8	180.0
C3	C7	C8	H7	180.0	179.8
C9	C8	C7	CL	178.0	180.0
C7	C8	C9	C10	359.3	0.0
C7	C8	C9	H9	179.3	180.0
C3	C7	H7	C8	180.0	180.2
H7	C7	C8	C9	180.8	180.1
H7	C7	C8	CL	2.8	0.2
C2	C10	C9	C8	0.3	360.0
C9	C8	C7	H7	180.8	180.1
C7	C8	C9	CL	182.0	180.0
C10	C9	C8	H9	180.0	180.1
C8	C9	C10	H10	180.3	180.0
CL	C8	C7	H7	2.8	0.2
C7	C8	CL	C9	178.0	180.0
CL	C8	C9	C10	177.3	180.0
CL	C8	C9	H9	357.3	359.9
C2	C10	C9	H10	180.0	180.0
C10	C9	C8	CL	177.3	180.0
C8	C9	C10	H9	180.0	179.9
H9	C9	C8	CL	357.3	359.9
C8	C9	H9	C10	180.0	180.1
H9	C9	C10	H10	0.3	0.0
C2	C10	H10	C9	180.0	180.0
H10	C10	C9	H9	0.3	0.0
C5	C11	C12	H111	234.7	240.0
C5	C11	C12	H112	125.3	120.0
H111	C11	C12	H112	250.6	240.0
C13	C12	C11	H121	125.3	120.0
C13	C12	C11	H122	234.7	240.0
C11	C12	C13	H131	54.7	175.2
C11	C12	C13	H132	180.0	295.2
C11	C12	C13	H133	305.3	55.2
H121	C12	C11	H122	109.5	120.0
C5	C11	H111	C12	124.5	120.0
C5	C11	H111	H112	242.3	240.0
C12	C11	H111	H112	117.7	120.0
H111	C11	C12	C13	32.1	304.8
H111	C11	C12	H121	266.8	184.8
H111	C11	C12	H122	157.3	64.8
C5	C11	H112	C12	235.5	240.0
C5	C11	H112	H111	117.7	120.0
C12	C11	H112	H111	242.3	240.0
H112	C11	C12	C13	141.5	64.7
H112	C11	C12	H121	16.3	304.7
H112	C11	C12	H122	266.8	184.8
C13	C12	C11	H111	32.1	304.8
C13	C12	C11	H112	141.5	64.7
C11	C12	C13	H121	234.7	240.0
C11	C12	C13	H122	125.3	120.0
H121	C12	C13	H122	250.5	240.0
H131	C13	C12	H132	234.7	240.0
H131	C13	C12	H133	109.5	120.0
H132	C13	C12	H133	234.7	240.0
H121	C12	C11	H111	266.8	184.8
H121	C12	C11	H112	16.3	304.7
C11	C12	H121	C13	125.4	120.0
C11	C12	H121	H122	242.7	240.1
C13	C12	H121	H122	117.3	120.1
H121	C12	C13	H131	180.0	295.2
H121	C12	C13	H132	305.3	55.1
H121	C12	C13	H133	70.5	175.2
H122	C12	C11	H111	157.3	64.8
H122	C12	C11	H112	266.8	184.8
C11	C12	H122	C13	234.7	240.0
C11	C12	H122	H121	117.3	120.0
C13	C12	H122	H121	242.7	240.0
H122	C12	C13	H131	289.5	55.2
H122	C12	C13	H132	54.7	175.2
H122	C12	C13	H133	180.0	295.2
H131	C13	C12	H121	180.0	295.2
H131	C13	C12	H122	289.5	55.2
C12	C13	H131	H132	125.4	120.0
C12	C13	H131	H133	242.7	240.1
H132	C13	H131	H133	117.3	120.1
H132	C13	C12	H121	305.3	55.1
H132	C13	C12	H122	54.7	175.2
C12	C13	H132	H131	234.7	240.0
C12	C13	H132	H133	125.3	120.0
H131	C13	H132	H133	250.5	240.0
H133	C13	C12	H121	70.5	175.2
H133	C13	C12	H122	180.0	295.2
C12	C13	H133	H131	117.3	120.0
C12	C13	H133	H132	234.6	240.0
H131	C13	H133	H132	117.3	120.0