PDB Chemical Component H0Y

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for H0Y

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O82	C28	1.259	1.347
C28	O81	1.251	1.215
C28	C24	1.508	1.480
C24	N23	1.343	1.327
C24	C25	1.393	1.394
N23	C22	1.341	1.323
C25	C26	1.390	1.387
C26	C27	1.389	1.384
C27	C22	1.390	1.396
C22	C19	1.396	1.484
C19	C20	1.390	1.395
C19	C18	1.395	1.391
C20	C21	1.399	1.380
C21	C16	1.395	1.385
C16	C15	1.520	1.504
C16	C17	1.387	1.396
C15	C14	1.520	1.527
C14	C13	1.523	1.534
C13	C12	1.513	1.514
C18	C17	1.394	1.394
C17	C12	1.508	1.479
C12	N11	1.266	1.298
N11	N10	1.327	1.401
N10	C8	1.366	1.381
C8	S9	1.752	1.759
C8	N7	1.349	1.289
S9	C4	1.700	1.762
C4	C3	1.388	1.393
C4	C5	1.393	1.398
C3	C2	1.393	1.378
C2	C1	1.391	1.387
N7	C5	1.362	1.347
C5	C6	1.398	1.411
C6	C1	1.388	1.372
O82	H82	0.950	0.968
C25	H25	1.080	1.081
C26	H26	1.080	1.080
C27	H27	1.080	1.080
C20	H20	1.081	1.080
C18	H18	1.080	1.080
C21	H21	1.080	1.080
C15	H151	1.100	1.090
C15	H152	1.100	1.090
C14	H141	1.099	1.090
C14	H142	1.099	1.090
C13	H131	1.101	1.091
C13	H132	1.100	1.091
N10	H10	1.000	0.969
C3	H3	1.080	1.080
C2	H2	1.080	1.080
C1	H1	1.080	1.080
C6	H6	1.080	1.080

Bond Angles for H0Y

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O82	C28	O81	121.3	120.0
O82	C28	C24	119.5	120.0
C28	O82	H82	109.5	117.0
O81	C28	C24	119.1	120.0
C28	C24	N23	119.8	119.7
C28	C24	C25	120.5	119.7
N23	C24	C25	119.7	120.7
C24	N23	C22	122.8	121.5
C24	C25	C26	119.0	119.3
C24	C25	H25	120.5	120.3
N23	C22	C27	119.5	120.7
N23	C22	C19	118.7	119.6
C25	C26	C27	119.7	118.6
C26	C25	H25	120.5	120.4
C25	C26	H26	120.1	120.7
C26	C27	C22	119.4	119.3
C27	C26	H26	120.1	120.7
C26	C27	H27	120.3	120.4
C27	C22	C19	121.7	119.7
C22	C27	H27	120.3	120.4
C22	C19	C20	120.3	120.1
C22	C19	C18	120.6	120.2
C20	C19	C18	119.1	119.7
C19	C20	C21	119.8	120.3
C19	C20	H20	120.1	119.9
C19	C18	C17	121.2	119.7
C19	C18	H18	119.4	120.1
C20	C21	C16	120.8	120.5
C21	C20	H20	120.1	119.8
C20	C21	H21	119.6	119.7
C21	C16	C15	120.6	119.0
C21	C16	C17	119.4	119.4
C16	C21	H21	119.6	119.7
C15	C16	C17	120.0	121.6
C16	C15	C14	109.9	111.3
C16	C15	H151	109.4	109.1
C16	C15	H152	109.4	109.2
C16	C17	C18	119.7	120.3
C16	C17	C12	119.4	120.1
C15	C14	C13	109.3	109.4
C14	C15	H151	109.4	109.1
C14	C15	H152	109.3	109.1
C15	C14	H141	109.5	109.5
C15	C14	H142	109.5	109.5
C14	C13	C12	107.7	107.4
C13	C14	H141	109.5	109.5
C13	C14	H142	109.5	109.5
C14	C13	H131	109.9	109.9
C14	C13	H132	109.9	109.9
C13	C12	C17	119.8	117.6
C13	C12	N11	118.2	121.2
C12	C13	H131	109.9	109.9
C12	C13	H132	109.9	109.9
C18	C17	C12	120.9	119.6
C17	C18	H18	119.4	120.2
C17	C12	N11	121.9	121.2
C12	N11	N10	122.6	120.0
N11	N10	C8	118.5	120.0
N11	N10	H10	120.7	120.0
N10	C8	S9	122.9	124.8
N10	C8	N7	119.8	124.8
C8	N10	H10	120.7	120.0
S9	C8	N7	117.3	110.4
C8	S9	C4	83.7	90.4
C8	N7	C5	111.4	118.0
S9	C4	C3	121.6	131.1
S9	C4	C5	118.8	108.5
C3	C4	C5	119.7	120.4
C4	C3	C2	120.1	120.2
C4	C3	H3	119.9	120.0
C4	C5	N7	108.7	112.8
C4	C5	C6	120.0	118.4
C3	C2	C1	120.5	119.9
C2	C3	H3	119.9	119.8
C3	C2	H2	119.7	120.0
C2	C1	C6	119.3	120.7
C1	C2	H2	119.8	120.0
C2	C1	H1	120.3	119.7
N7	C5	C6	131.3	128.8
C5	C6	C1	120.4	120.4
C5	C6	H6	119.8	119.7
C6	C1	H1	120.3	119.6
C1	C6	H6	119.8	119.8
H151	C15	H152	109.4	109.0
H141	C14	H142	109.5	109.5
H131	C13	H132	109.4	109.8

Torsion Angles for H0Y

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O81	C28	O82	C24	178.0	180.1
O82	C28	C24	N23	344.0	0.0
O82	C28	C24	C25	163.1	179.8
O82	C28	O81	C24	182.0	179.9
O81	C28	O82	H82	0.0	0.0
O81	C28	C24	N23	166.0	179.9
O81	C28	C24	C25	345.0	359.7
O82	C28	C24	O81	178.1	180.1
C24	C28	O82	H82	182.0	180.0
N23	C24	C28	C25	180.9	180.2
C28	C24	N23	C22	177.5	180.0
C28	C24	C25	C26	181.3	180.0
C28	C24	C25	H25	1.3	359.9
C28	C24	N23	C25	179.1	179.8
N23	C24	C25	C26	0.4	359.8
N23	C24	C25	H25	180.4	179.7
C24	N23	C22	C27	2.4	0.0
C24	N23	C22	C19	178.9	180.0
C28	C24	C25	N23	180.9	180.2
C25	C24	N23	C22	358.4	0.2
C24	C25	C26	C27	359.9	360.0
C26	C25	C24	H25	180.0	180.1
C24	C25	C26	H26	179.9	179.9
C22	N23	C24	C25	358.4	0.2
C26	C27	C22	N23	358.0	359.7
C27	C22	N23	C19	183.5	180.0
N23	C22	C27	H27	178.0	180.0
N23	C22	C19	C20	20.9	185.0
N23	C22	C19	C18	203.6	4.7
C24	C25	C26	H25	180.0	179.9
C25	C26	C27	C22	0.9	0.2
C27	C26	C25	H26	180.0	180.1
C25	C26	C27	H27	180.9	180.0
N23	C22	C27	C26	358.0	359.7
C27	C26	C25	H25	179.9	180.1
C25	C26	C27	H26	180.0	179.9
C26	C27	C22	C19	181.5	179.8
C22	C27	C26	H27	180.0	180.3
N23	C22	C27	C19	176.4	180.0
C22	C27	C26	H26	180.9	180.3
C26	C27	C22	H27	180.0	179.7
C27	C22	C19	C20	197.3	5.0
C27	C22	C19	C18	20.1	184.7
N23	C22	C19	C27	183.5	180.0
C19	C22	C27	H27	1.6	0.0
C20	C19	C22	C18	177.3	180.3
C22	C19	C20	C21	181.6	180.1
C22	C19	C20	H20	1.7	0.0
C22	C19	C18	C17	178.2	179.8
C22	C19	C18	H18	358.2	360.0
C22	C19	C20	C18	182.7	179.7
C20	C19	C18	C17	0.9	359.5
C20	C19	C18	H18	180.9	179.7
C19	C20	C21	C16	0.6	359.9
C21	C20	C19	H20	180.0	180.1
C19	C20	C21	H21	180.6	179.9
C22	C19	C18	C20	177.3	180.3
C18	C19	C20	C21	359.0	0.4
C18	C19	C20	H20	179.0	180.3
C16	C17	C18	C19	359.7	0.3
C19	C18	C17	C12	180.2	179.7
C17	C18	C19	H18	180.0	179.8
C21	C20	C19	C18	359.0	0.4
C19	C20	C21	H20	180.0	179.9
C20	C21	C16	C15	179.8	179.7
C20	C21	C16	C17	0.0	359.9
C16	C21	C20	H21	180.0	180.0
C16	C21	C20	H20	180.6	180.0
C20	C21	C16	H21	180.0	180.0
C15	C16	C21	C17	179.8	179.8
C21	C16	C15	C14	211.2	157.3
C21	C16	C15	H151	331.3	277.8
C21	C16	C15	H152	91.2	36.8
C21	C16	C17	C18	359.8	0.0
C21	C16	C17	C12	179.3	180.6
C21	C16	C15	C17	180.2	180.2
C15	C16	C21	H21	359.8	359.7
C15	C16	C17	C18	180.0	180.2
C15	C16	C17	C12	359.6	0.8
C16	C15	C14	C13	297.4	54.7
C14	C15	C16	H151	239.9	239.5
C14	C15	C16	H152	120.1	120.5
C16	C15	C14	H141	57.4	174.8
C16	C15	C14	H142	177.5	294.8
H151	C15	C16	H152	240.2	240.9
C19	C18	C17	C16	359.7	0.3
C21	C16	C17	C15	179.8	179.8
C17	C16	C21	H21	180.0	179.9
C17	C16	C15	C14	31.0	337.1
C17	C16	C15	H151	151.1	97.6
C17	C16	C15	H152	270.9	216.6
C13	C12	C17	C16	0.8	348.5
C18	C17	C16	C12	180.5	179.4
C16	C17	C18	H18	179.7	180.1
C16	C17	C12	N11	178.1	168.5
C14	C15	C16	C17	31.0	337.1
C16	C15	C14	H151	120.1	120.5
C16	C15	C14	H152	239.9	239.5
C15	C14	C13	C12	61.5	296.0
C13	C14	C15	H141	240.0	240.0
C13	C14	C15	H142	120.0	120.0
C15	C14	C13	H131	181.3	55.6
C15	C14	C13	H132	301.8	176.5
H151	C15	C14	H152	119.8	119.0
H141	C14	C15	H142	240.0	240.0
C13	C14	C15	H151	177.4	294.3
C13	C14	C15	H152	57.5	175.3
C15	C14	C13	H141	120.0	120.0
C15	C14	C13	H142	240.0	240.1
C14	C13	C12	C17	328.9	42.5
C14	C13	C12	N11	151.4	222.5
C12	C13	C14	H131	240.3	240.4
C12	C13	C14	H132	119.7	119.5
H141	C14	C13	H142	120.0	120.1
H131	C13	C14	H132	239.5	239.0
C16	C17	C12	C13	0.8	348.5
C12	C13	C14	H141	301.6	176.0
C12	C13	C14	H142	181.5	55.9
C14	C13	C12	H131	119.7	119.5
C14	C13	C12	H132	240.2	240.5
C18	C17	C12	C13	180.3	169.0
C17	C12	C13	N11	177.5	180.0
C13	C12	N11	N10	358.7	0.0
H131	C13	C12	H132	120.5	121.0
C19	C18	C17	H18	180.0	180.2
C16	C17	C18	C12	179.5	180.6
C13	C12	C17	C18	180.3	169.0
C18	C17	C12	N11	357.7	349.1
C16	C17	C12	C18	180.5	179.4
C13	C12	C17	N11	182.6	180.0
C17	C12	C13	H131	209.2	283.0
C17	C12	C13	H132	88.7	162.0
C12	C17	C18	H18	0.2	359.6
C17	C12	N11	N10	181.3	180.0
C13	C12	N11	C17	177.4	180.0
N11	C12	C13	H131	31.7	103.0
N11	C12	C13	H132	271.2	342.0
C12	N11	N10	C8	149.0	180.0
C12	N11	N10	H10	329.0	359.9
N11	N10	C8	S9	351.4	180.0
N11	N10	C8	N7	173.5	359.7
C8	N10	N11	H10	180.0	180.1
N11	N10	C8	H10	180.0	179.9
S9	C8	N10	N7	177.9	180.3
N10	C8	S9	C4	180.6	180.0
N10	C8	N7	C5	179.9	179.8
N10	C8	S9	N7	182.0	179.8
S9	C8	N10	H10	171.5	0.0
S9	C8	N7	C5	1.9	359.6
C8	S9	C4	C3	180.7	180.0
C8	S9	C4	C5	0.6	0.1
N10	C8	N7	S9	178.1	180.2
N7	C8	N10	H10	353.5	179.8
N7	C8	S9	C4	358.6	0.2
C4	C5	N7	C8	358.7	0.5
C8	N7	C5	C6	178.9	180.1
C4	S9	C8	N7	358.6	0.2
C3	C4	S9	C5	180.1	180.0
S9	C4	C3	C2	180.1	180.0
S9	C4	C3	H3	0.1	359.9
S9	C4	C5	N7	0.3	359.7
S9	C4	C5	C6	180.1	180.0
S9	C4	C3	C5	179.9	180.0
C3	C4	C5	N7	180.2	179.8
C3	C4	C5	C6	0.0	0.1
C4	C3	C2	C1	359.8	360.0
C2	C3	C4	H3	180.0	180.1
C4	C3	C2	H2	179.8	180.0
C8	N7	C5	C4	358.7	0.5
S9	C4	C5	C3	180.1	180.0
C5	C4	C3	C2	0.2	0.0
C5	C4	C3	H3	180.2	179.9
N7	C5	C4	C6	180.2	179.7
C4	C5	C6	C1	359.8	359.9
C4	C5	C6	H6	179.8	180.0
C2	C3	C4	C5	0.2	0.0
C4	C3	C2	H3	180.0	179.9
C3	C2	C1	C6	359.9	0.0
C1	C2	C3	H2	180.0	180.0
C3	C2	C1	H1	179.9	180.0
C1	C2	C3	H3	179.8	180.0
C3	C2	C1	H2	180.0	180.0
C5	C6	C1	C2	0.3	0.1
C6	C1	C2	H1	180.0	180.0
C2	C1	C6	H6	180.2	180.0
C4	C5	N7	C6	179.8	180.4
N7	C5	C6	C1	179.6	180.3
N7	C5	C6	H6	359.6	0.3
C4	C5	C6	N7	180.2	179.6
C2	C1	C6	C5	0.3	0.1
C5	C6	C1	H1	180.3	180.1
C1	C6	C5	H6	180.0	180.0
C6	C1	C2	H2	179.9	180.0
C2	C1	C6	H1	180.0	180.0
C5	C6	C1	H6	180.0	180.0
H82	O82	C28	O81	0.0	0.0
H82	O82	C28	C24	182.0	180.0
C24	C25	H25	C26	180.0	180.1
H25	C25	C26	C27	179.9	180.1
H25	C25	C26	H26	359.9	360.0
C25	C26	H26	C27	180.0	180.1
H26	C26	C25	H25	359.9	360.0
H26	C26	C27	C22	180.9	180.3
H26	C26	C27	H27	0.9	0.1
C26	C27	H27	C22	180.0	180.3
H27	C27	C26	H26	0.9	0.1
H27	C27	C22	C19	1.6	0.0
H20	C20	C19	C18	179.0	180.3
C19	C20	H20	C21	180.0	180.1
H20	C20	C21	C16	180.6	180.0
H20	C20	C21	H21	0.6	0.0
C19	C18	H18	C17	180.0	179.8
H18	C18	C17	C12	0.2	359.6
C20	C21	H21	C16	180.0	180.0
H21	C21	C20	H20	0.6	0.0
H21	C21	C16	C15	359.8	359.7
H21	C21	C16	C17	180.0	179.9
H151	C15	C16	C17	151.1	97.6
C16	C15	H151	C14	239.6	238.2
C16	C15	H151	H152	119.8	119.2
H151	C15	C14	C13	177.4	294.3
C14	C15	H151	H152	240.2	241.0
H151	C15	C14	H141	297.3	54.3
H151	C15	C14	H142	57.4	174.3
H152	C15	C16	C17	270.9	216.6
C16	C15	H152	C14	120.4	121.8
C16	C15	H152	H151	240.2	240.9
H152	C15	C14	C13	57.5	175.3
C14	C15	H152	H151	119.8	119.0
H152	C15	C14	H141	177.5	295.3
H152	C15	C14	H142	297.5	55.3
C15	C14	H141	C13	240.2	240.1
H141	C14	C15	H151	297.3	54.3
H141	C14	C15	H152	177.5	295.3
C15	C14	H141	H142	120.1	120.0
H141	C14	C13	C12	301.6	176.0
C13	C14	H141	H142	239.9	239.9
H141	C14	C13	H131	61.3	295.6
H141	C14	C13	H132	181.8	56.5
C15	C14	H142	C13	119.8	119.9
H142	C14	C15	H151	57.4	174.3
H142	C14	C15	H152	297.5	55.3
C15	C14	H142	H141	239.9	240.0
H142	C14	C13	C12	181.5	55.9
C13	C14	H142	H141	120.1	120.1
H142	C14	C13	H131	301.2	175.5
H142	C14	C13	H132	61.8	296.4
C14	C13	H131	C12	241.6	242.0
H131	C13	C14	H141	61.3	295.6
H131	C13	C14	H142	301.2	175.5
C14	C13	H131	H132	120.8	121.0
H131	C13	C12	C17	209.2	283.0
H131	C13	C12	N11	31.7	103.0
C12	C13	H131	H132	239.2	239.0
C14	C13	H132	C12	118.4	118.0
H132	C13	C14	H141	181.8	56.5
H132	C13	C14	H142	61.8	296.4
C14	C13	H132	H131	239.2	239.0
H132	C13	C12	C17	88.7	162.0
H132	C13	C12	N11	271.2	342.0
C12	C13	H132	H131	120.8	121.1
N11	N10	H10	C8	180.0	180.1
H10	N10	C8	S9	171.5	0.0
H10	N10	C8	N7	353.5	179.8
H3	C3	C4	C5	180.2	179.9
C4	C3	H3	C2	180.0	180.1
H3	C3	C2	C1	179.8	180.0
H3	C3	C2	H2	359.8	0.1
C3	C2	H2	C1	180.0	180.0
H2	C2	C3	H3	359.8	0.1
H2	C2	C1	C6	179.9	180.0
H2	C2	C1	H1	359.9	360.0
C2	C1	H1	C6	180.0	180.0
H1	C1	C2	H2	359.9	360.0
H1	C1	C6	H6	0.2	0.0
C5	C6	H6	C1	180.0	180.0
H6	C6	C1	H1	0.2	0.0