PDB Chemical Component GYC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GYC

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	CA1	1.452	1.470
N1	H	1.000	1.009
N1	H2	1.000	1.009
SG1	CB1	1.539	1.814
SG1	HG1	1.300	1.345
CB1	CA1	1.526	1.530
CB1	HB11	1.100	1.090
CB1	HB12	1.100	1.090
CA1	C1	1.507	1.508
CA1	HA1	1.100	1.089
C1	N2	1.292	1.296
C1	N3	1.390	1.366
N2	CA2	1.381	1.367
N3	C2	1.387	1.352
N3	CA3	1.479	1.465
C2	O2	1.252	1.218
C2	CA2	1.441	1.473
CA2	CB2	1.387	1.378
CA3	C3	1.492	1.507
CA3	HA31	1.100	1.091
CA3	HA32	1.100	1.090
CB2	CG2	1.398	1.465
CB2	HB2	1.080	1.080
CG2	CD1	1.439	1.403
CG2	CD2	1.440	1.403
CD1	CE1	1.412	1.371
CD1	HD1	1.080	1.080
CD2	CE2	1.417	1.371
CD2	HD2	1.080	1.080
CE1	CZ	1.430	1.392
CE1	HE1	1.080	1.079
CE2	CZ	1.421	1.391
CE2	HE2	1.080	1.080
CZ	OH	1.339	1.357
OH	HOH	0.950	0.966
C3	O3	1.213	1.209
C3	OXT	1.291	1.342
OXT	HXT	0.950	0.966

Bond Angles for GYC

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
CA1	N1	H	109.5	111.0
CA1	N1	H2	109.5	110.9
N1	CA1	CB1	109.3	109.4
N1	CA1	C1	107.5	109.5
N1	CA1	HA1	112.8	109.5
H	N1	H2	109.4	111.0
CB1	SG1	HG1	102.0	103.0
SG1	CB1	CA1	111.7	109.5
SG1	CB1	HB11	108.7	109.5
SG1	CB1	HB12	108.8	109.5
CA1	CB1	HB11	108.7	109.4
CA1	CB1	HB12	108.7	109.5
CB1	CA1	C1	114.6	109.5
CB1	CA1	HA1	105.4	109.5
HB11	CB1	HB12	110.2	109.4
C1	CA1	HA1	107.3	109.5
CA1	C1	N2	128.3	124.4
CA1	C1	N3	121.8	124.3
N2	C1	N3	109.7	111.4
C1	N2	CA2	108.6	109.3
C1	N3	C2	110.1	108.3
C1	N3	CA3	128.6	125.9
N2	CA2	C2	109.5	105.7
N2	CA2	CB2	129.4	127.1
C2	N3	CA3	121.1	125.8
N3	C2	O2	122.6	127.4
N3	C2	CA2	102.1	105.3
N3	CA3	C3	123.1	109.5
N3	CA3	HA31	105.1	109.5
N3	CA3	HA32	105.1	109.5
O2	C2	CA2	135.3	127.3
C2	CA2	CB2	121.1	127.2
CA2	CB2	CG2	132.0	120.0
CA2	CB2	HB2	114.0	120.0
C3	CA3	HA31	105.2	109.5
C3	CA3	HA32	105.2	109.5
CA3	C3	O3	120.0	120.0
CA3	C3	OXT	107.6	120.0
HA31	CA3	HA32	113.5	109.5
CG2	CB2	HB2	114.0	120.0
CB2	CG2	CD1	122.9	120.1
CB2	CG2	CD2	119.0	120.2
CD1	CG2	CD2	118.2	119.7
CG2	CD1	CE1	121.2	119.9
CG2	CD1	HD1	119.4	120.1
CG2	CD2	CE2	120.5	119.9
CG2	CD2	HD2	119.7	120.0
CE1	CD1	HD1	119.4	120.0
CD1	CE1	CZ	119.8	120.1
CD1	CE1	HE1	120.1	119.9
CE2	CD2	HD2	119.8	120.1
CD2	CE2	CZ	120.5	120.2
CD2	CE2	HE2	119.8	119.9
CZ	CE1	HE1	120.1	120.0
CE1	CZ	CE2	119.8	120.3
CE1	CZ	OH	121.6	119.9
CZ	CE2	HE2	119.8	119.9
CE2	CZ	OH	118.5	119.9
CZ	OH	HOH	109.5	114.0
O3	C3	OXT	125.6	120.0
C3	OXT	HXT	109.5	117.0

Torsion Angles for GYC

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
H	N1	CA1	H2	240.0	236.1
SG1	CB1	CA1	N1	285.7	300.0
N1	CA1	CB1	HB11	165.7	180.0
N1	CA1	CB1	HB12	45.7	60.0
CB1	CA1	N1	C1	235.1	240.0
CB1	CA1	N1	HA1	117.0	120.0
C1	CA1	N1	HA1	241.9	239.9
N1	CA1	C1	N2	244.7	325.1
N1	CA1	C1	N3	59.1	144.7
CA1	N1	H	H2	120.0	123.9
H	N1	CA1	CB1	180.0	300.0
H	N1	CA1	C1	305.0	60.0
H	N1	CA1	HA1	63.1	180.0
CA1	N1	H2	H	240.0	236.1
H2	N1	CA1	CB1	300.0	64.0
H2	N1	CA1	C1	64.9	183.9
H2	N1	CA1	HA1	183.0	304.0
N1	CA1	CB1	SG1	285.7	300.0
CA1	CB1	SG1	HB11	240.0	240.0
CA1	CB1	SG1	HB12	120.0	120.1
SG1	CB1	CA1	C1	165.0	180.0
SG1	CB1	CA1	HA1	47.2	60.0
HB11	CB1	SG1	HB12	240.0	240.0
HG1	SG1	CB1	CA1	180.0	180.0
HG1	SG1	CB1	HB11	300.0	300.0
HG1	SG1	CB1	HB12	60.0	59.9
CB1	CA1	N1	H	180.0	300.0
CB1	CA1	N1	H2	300.0	64.0
N1	CA1	CB1	C1	120.7	120.0
N1	CA1	CB1	HA1	238.5	240.0
CA1	CB1	SG1	HG1	180.0	180.0
SG1	CB1	CA1	HB11	120.0	120.0
SG1	CB1	CA1	HB12	240.0	239.9
HB11	CB1	CA1	HB12	120.0	120.0
C1	CA1	CB1	HA1	117.8	120.0
CB1	CA1	C1	N2	6.4	85.0
CB1	CA1	C1	N3	180.8	264.7
HB11	CB1	SG1	HG1	300.0	300.0
SG1	CB1	HB11	CA1	238.2	240.0
SG1	CB1	HB11	HB12	119.1	120.0
CA1	CB1	HB11	HB12	240.9	240.0
HB11	CB1	CA1	C1	45.0	60.0
HB11	CB1	CA1	HA1	287.2	300.0
HB12	CB1	SG1	HG1	60.0	59.9
SG1	CB1	HB12	CA1	121.8	120.1
SG1	CB1	HB12	HB11	240.9	240.0
CA1	CB1	HB12	HB11	119.1	119.9
HB12	CB1	CA1	C1	285.0	300.1
HB12	CB1	CA1	HA1	167.2	180.0
C1	CA1	N1	H	305.0	60.0
C1	CA1	N1	H2	64.9	183.9
N1	CA1	C1	CB1	238.3	240.1
N1	CA1	C1	HA1	121.6	120.0
C1	CA1	CB1	HB11	45.0	60.0
C1	CA1	CB1	HB12	285.0	300.1
CB1	CA1	C1	HA1	243.3	240.0
N2	C1	CA1	N3	185.6	180.3
CA1	C1	N2	CA2	175.0	180.0
CA1	C1	N3	C2	184.4	180.0
CA1	C1	N3	CA3	359.9	0.0
HA1	CA1	N1	H	63.1	180.0
HA1	CA1	N1	H2	183.0	304.0
N1	CA1	HA1	CB1	119.2	120.0
N1	CA1	HA1	C1	241.8	240.0
HA1	CA1	CB1	HB11	287.2	300.0
HA1	CA1	CB1	HB12	167.2	180.0
CB1	CA1	HA1	C1	122.6	120.0
HA1	CA1	C1	N2	123.1	205.0
HA1	CA1	C1	N3	297.5	24.7
N2	C1	CA1	HA1	123.1	205.0
CA1	C1	N2	N3	175.0	179.7
N2	C1	N3	C2	359.7	359.7
N2	C1	N3	CA3	175.2	179.7
C1	N2	CA2	C2	0.2	359.8
C1	N2	CA2	CB2	180.4	180.0
N3	C1	CA1	HA1	297.5	24.7
CA1	C1	N3	N2	184.7	180.3
N3	C1	N2	CA2	0.1	0.3
C2	N3	C1	CA3	184.5	180.0
C1	N3	C2	O2	180.0	180.1
C1	N3	C2	CA2	0.4	0.1
C1	N3	CA3	C3	134.8	90.0
C1	N3	CA3	HA31	254.8	210.0
C1	N3	CA3	HA32	14.9	330.0
CA2	N2	C1	N3	0.1	0.3
N3	C2	CA2	N2	359.6	0.0
O2	C2	CA2	N2	180.1	180.1
C2	CA2	N2	CB2	179.8	179.8
N2	CA2	CB2	CG2	1.0	354.8
N2	CA2	CB2	HB2	181.0	174.8
C1	N3	C2	CA3	175.9	180.0
N2	CA2	C2	N3	359.6	0.0
C2	N3	CA3	C3	309.9	270.0
C2	N3	CA3	HA31	69.9	30.0
C2	N3	CA3	HA32	189.9	150.0
O2	C2	N3	CA2	179.6	179.9
N3	C2	CA2	CB2	179.4	179.9
C1	N3	CA3	C2	184.9	180.0
CA3	N3	C2	O2	4.1	0.1
CA3	N3	C2	CA2	184.5	180.1
C3	CA3	N3	HA31	240.0	240.0
C3	CA3	N3	HA32	120.0	120.0
N3	CA3	C3	O3	157.5	0.0
N3	CA3	C3	OXT	310.2	180.0
HA31	CA3	N3	HA32	240.0	240.0
N2	CA2	C2	O2	180.1	180.1
O2	C2	N3	CA3	4.1	0.1
N3	C2	O2	CA2	180.5	180.1
O2	C2	CA2	CB2	359.9	359.9
N2	CA2	C2	CB2	180.2	180.2
CA2	C2	N3	CA3	184.5	180.1
N3	C2	CA2	O2	179.6	179.9
C2	CA2	CB2	CG2	181.3	175.0
C2	CA2	CB2	HB2	1.3	355.0
N2	CA2	CB2	C2	179.7	179.8
CG2	CB2	CA2	HB2	180.0	179.9
CA2	CB2	CG2	CD1	359.7	6.0
CA2	CB2	CG2	CD2	178.8	185.7
N3	CA3	C3	HA31	120.0	120.0
N3	CA3	C3	HA32	240.0	240.0
HA31	CA3	C3	HA32	120.1	120.0
O3	C3	CA3	OXT	207.3	180.1
CA3	C3	OXT	HXT	209.2	180.0
N3	CA3	HA31	C3	228.7	240.0
N3	CA3	HA31	HA32	114.3	120.0
C3	CA3	HA31	HA32	245.6	240.0
HA31	CA3	C3	O3	37.6	240.0
HA31	CA3	C3	OXT	190.3	60.0
N3	CA3	HA32	C3	131.3	120.0
N3	CA3	HA32	HA31	245.7	240.0
C3	CA3	HA32	HA31	114.4	120.0
HA32	CA3	C3	O3	277.5	120.0
HA32	CA3	C3	OXT	70.2	300.0
CA2	CB2	CG2	HB2	180.0	180.1
CD1	CG2	CB2	CD2	180.9	180.3
CB2	CG2	CD1	CE1	178.9	179.9
CB2	CG2	CD1	HD1	359.0	360.0
CB2	CG2	CD2	CE2	181.1	180.1
CB2	CG2	CD2	HD2	1.1	0.0
CA2	CB2	HB2	CG2	180.0	179.9
HB2	CB2	CG2	CD1	179.7	186.0
HB2	CB2	CG2	CD2	358.8	5.7
CD1	CG2	CB2	HB2	179.7	186.0
CB2	CG2	CD1	CD2	179.1	179.7
CD1	CG2	CD2	CE2	0.2	359.8
CD1	CG2	CD2	HD2	180.2	179.7
CE1	CD1	CG2	HD1	180.0	179.9
CG2	CD1	CE1	CZ	359.9	0.1
CG2	CD1	CE1	HE1	179.9	180.0
CD2	CG2	CB2	HB2	358.8	5.7
CB2	CG2	CD2	CD1	180.9	180.3
CD2	CG2	CD1	CE1	359.9	0.2
CD2	CG2	CD1	HD1	179.9	180.3
CE2	CD2	CG2	HD2	180.0	180.0
CG2	CD2	CE2	CZ	359.9	360.0
CG2	CD2	CE2	HE2	179.9	180.0
CE1	CD1	CG2	CD2	359.9	0.2
CG2	CD1	CE1	HD1	180.0	180.1
CZ	CE1	CD1	HE1	180.0	180.0
CD1	CE1	CZ	CE2	0.3	359.7
CD1	CE1	CZ	OH	180.4	180.0
HD1	CD1	CG2	CD2	179.9	180.3
CG2	CD1	HD1	CE1	180.0	179.9
HD1	CD1	CE1	CZ	179.9	180.0
HD1	CD1	CE1	HE1	359.9	359.9
CG2	CD2	CE2	HD2	180.0	180.0
CE1	CZ	CE2	CD2	359.8	0.3
CZ	CE2	CD2	HE2	180.0	180.0
CD2	CE2	CZ	OH	179.7	180.0
CG2	CD2	HD2	CE2	180.0	180.0
HD2	CD2	CE2	CZ	179.9	180.0
HD2	CD2	CE2	HE2	359.9	0.0
CZ	CE1	CD1	HD1	179.9	180.0
CD1	CE1	CZ	HE1	180.0	180.0
CD2	CE2	CZ	CE1	359.8	0.3
CE1	CZ	CE2	HE2	179.9	180.3
CE2	CZ	CE1	OH	179.9	179.7
CE1	CZ	OH	HOH	180.0	90.0
HE1	CE1	CD1	HD1	359.9	359.9
CD1	CE1	HE1	CZ	180.0	180.0
HE1	CE1	CZ	CE2	180.3	179.7
HE1	CE1	CZ	OH	0.4	0.0
CZ	CE2	CD2	HD2	179.9	180.0
CD2	CE2	CZ	HE2	180.0	180.0
CE2	CZ	CE1	HE1	180.3	179.7
CE1	CZ	CE2	OH	180.1	180.3
CE2	CZ	OH	HOH	0.1	270.2
HE2	CE2	CD2	HD2	359.9	0.0
CD2	CE2	HE2	CZ	180.0	180.0
HE2	CE2	CZ	OH	359.8	0.0
OH	CZ	CE1	HE1	0.4	0.0
CE1	CZ	OH	CE2	179.9	179.7
OH	CZ	CE2	HE2	359.8	0.0
O3	C3	CA3	HA31	37.6	240.0
O3	C3	CA3	HA32	277.5	120.0
CA3	C3	O3	OXT	147.5	179.9
O3	C3	OXT	HXT	360.0	359.9
OXT	C3	CA3	HA31	190.3	60.0
OXT	C3	CA3	HA32	70.2	300.0
CA3	C3	OXT	O3	209.2	180.1