PDB Chemical Component GXL

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GXL

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.530	1.530
C1	O1	1.438	1.429
C1	O5	1.414	1.425
C1	H1	1.116	1.090
C2	C3	1.511	1.532
C2	O2	1.437	1.429
C2	H2	1.115	1.089
C3	C4	1.514	1.532
C3	O3	1.455	1.428
C3	H3	1.115	1.090
C4	C5	1.526	1.531
C4	O4	1.444	1.428
C4	H4	1.115	1.090
C5	C6	1.522	1.530
C5	O5	1.425	1.424
C5	H5	1.115	1.089
C6	O6	1.422	1.428
C6	H61	1.115	1.091
C6	H62	1.115	1.089
O1	HO1	0.951	0.966
O2	HO2	0.950	0.968
O3	HO3	0.950	0.967
O4	HO4	0.950	0.967
O6	HO6	0.950	0.968

Bond Angles for GXL

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	108.2	109.4
C2	C1	O5	109.1	109.8
C2	C1	H1	109.7	109.4
C1	C2	C3	109.7	109.0
C1	C2	O2	113.1	109.6
C1	C2	H2	108.7	109.5
O1	C1	O5	110.5	109.4
O1	C1	H1	109.7	109.4
C1	O1	HO1	108.3	106.8
O5	C1	H1	109.6	109.5
C1	O5	C5	113.6	107.6
C3	C2	O2	107.7	109.6
C3	C2	H2	108.8	109.6
C2	C3	C4	109.6	108.6
C2	C3	O3	109.2	109.6
C2	C3	H3	109.3	109.6
O2	C2	H2	108.8	109.6
C2	O2	HO2	113.1	106.8
C4	C3	O3	110.1	109.8
C4	C3	H3	109.3	109.6
C3	C4	C5	109.9	109.0
C3	C4	O4	107.4	109.5
C3	C4	H4	108.8	109.6
O3	C3	H3	109.3	109.6
C3	O3	HO3	109.2	106.8
C5	C4	O4	113.1	109.7
C5	C4	H4	108.8	109.5
C4	C5	C6	111.5	109.4
C4	C5	O5	109.6	109.7
C4	C5	H5	109.6	109.4
O4	C4	H4	108.8	109.5
C4	O4	HO4	107.4	106.9
C6	C5	O5	106.8	109.4
C6	C5	H5	109.6	109.4
C5	C6	O6	109.1	109.5
C5	C6	H61	112.3	109.4
C5	C6	H62	112.3	109.5
O5	C5	H5	109.6	109.5
O6	C6	H61	112.3	109.4
O6	C6	H62	112.4	109.5
C6	O6	HO6	109.2	106.8
H61	C6	H62	98.1	109.5

Torsion Angles for GXL

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	O5	120.3	120.1
O1	C1	C2	H1	240.4	240.2
C2	C1	O1	HO1	180.0	179.7
O5	C1	C2	H1	120.1	120.1
C2	C1	O5	C5	61.8	67.6
C3	C2	C1	O2	120.3	119.9
C3	C2	C1	H2	241.2	240.1
C1	C2	C3	C4	55.7	53.7
C1	C2	C3	O3	176.4	173.6
C1	C2	C3	H3	295.9	294.0
O2	C2	C1	H2	120.9	120.2
C1	C2	O2	HO2	180.0	300.0
C2	C1	O1	O5	240.6	239.7
C2	C1	O1	H1	119.6	119.8
O1	C1	C2	C3	62.3	58.8
O1	C1	C2	O2	302.1	298.9
O1	C1	C2	H2	181.2	178.7
O5	C1	O1	H1	239.0	240.1
O1	C1	O5	C5	302.9	307.6
C2	C1	O5	O1	118.9	120.0
C2	C1	O5	H1	239.9	239.9
O5	C1	C2	C3	302.1	298.8
O5	C1	C2	O2	181.8	178.8
O5	C1	C2	H2	60.9	58.6
O1	C1	O5	H1	121.0	119.9
O5	C1	O1	HO1	299.4	300.0
C4	C5	O5	C1	298.7	292.3
C6	C5	O5	C1	177.8	172.3
C1	O5	C5	H5	59.1	52.4
C2	C1	H1	O1	241.2	240.2
C2	C1	H1	O5	119.8	120.3
H1	C1	C2	C3	182.0	178.6
H1	C1	C2	O2	61.7	58.7
H1	C1	C2	H2	300.8	298.5
O1	C1	H1	O5	238.5	240.1
H1	C1	O1	HO1	60.4	59.9
H1	C1	O5	C5	181.9	187.7
C3	C2	C1	O1	62.3	58.8
C3	C2	C1	O5	302.1	298.8
C3	C2	C1	H1	182.0	178.6
C1	C2	C3	O2	236.5	240.1
C1	C2	C3	H2	118.8	119.8
O2	C2	C3	H2	242.3	239.7
C3	C2	O2	HO2	58.6	180.4
C4	C3	C2	O3	239.4	240.1
C4	C3	C2	H3	119.8	119.8
C2	C3	C4	C5	305.0	306.2
C2	C3	C4	O4	68.5	66.2
C2	C3	C4	H4	186.0	186.4
O3	C3	C2	H3	240.4	239.7
C2	C3	O3	HO3	180.0	60.0
O2	C2	C1	O1	302.1	298.9
O2	C2	C1	O5	181.8	178.8
O2	C2	C1	H1	61.7	58.7
C1	C2	O2	C3	121.4	119.6
C1	C2	O2	H2	239.1	239.8
C3	C2	O2	H2	117.7	120.2
O2	C2	C3	C4	179.2	173.6
O2	C2	C3	O3	299.9	293.5
O2	C2	C3	H3	59.4	53.9
H2	C2	C1	O1	181.2	178.7
H2	C2	C1	O5	60.9	58.6
H2	C2	C1	H1	300.8	298.5
C1	C2	H2	C3	240.6	240.5
C1	C2	H2	O2	123.5	120.2
C3	C2	H2	O2	243.0	239.7
H2	C2	C3	C4	296.9	293.9
H2	C2	C3	O3	57.6	53.8
H2	C2	C3	H3	177.1	174.1
H2	C2	O2	HO2	300.9	60.2
C4	C3	C2	O2	179.2	173.6
C4	C3	C2	H2	296.9	293.9
C2	C3	C4	O3	120.1	119.8
C2	C3	C4	H3	240.2	240.3
O3	C3	C4	H3	120.1	120.5
C4	C3	O3	HO3	300.3	179.2
C5	C4	C3	O4	236.5	240.0
C5	C4	C3	H4	119.0	119.8
C3	C4	C5	C6	174.4	181.4
C3	C4	C5	O5	56.3	61.3
C3	C4	C5	H5	296.0	301.2
O4	C4	C3	H4	242.4	239.8
C3	C4	O4	HO4	180.0	60.1
O3	C3	C2	O2	299.9	293.5
O3	C3	C2	H2	57.6	53.8
C2	C3	O3	C4	239.7	240.8
C2	C3	O3	H3	119.6	120.3
C4	C3	O3	H3	239.9	239.5
O3	C3	C4	C5	184.9	186.4
O3	C3	C4	O4	308.4	306.4
O3	C3	C4	H4	66.0	66.6
H3	C3	C2	O2	59.4	53.9
H3	C3	C2	H2	177.1	174.1
C2	C3	H3	C4	120.0	119.1
C2	C3	H3	O3	240.5	239.7
C4	C3	H3	O3	120.5	120.5
H3	C3	C4	C5	64.8	66.0
H3	C3	C4	O4	188.3	186.0
H3	C3	C4	H4	305.9	306.2
H3	C3	O3	HO3	60.4	299.7
C1	O5	C5	C4	298.7	292.3
C5	C4	C3	O3	184.9	186.4
C5	C4	C3	H3	64.8	66.0
C3	C4	C5	O4	120.0	119.9
C3	C4	C5	H4	241.0	240.2
O4	C4	C5	H4	121.0	120.2
C5	C4	O4	HO4	301.4	179.7
C6	C5	C4	O5	118.1	120.1
C6	C5	C4	H5	238.4	240.2
C4	C5	C6	O6	69.9	179.8
C4	C5	C6	H61	304.6	59.9
C4	C5	C6	H62	195.2	299.9
O5	C5	C4	H5	120.3	120.1
O4	C4	C3	O3	308.4	306.4
O4	C4	C3	H3	188.3	186.0
C3	C4	O4	C5	238.6	240.4
C3	C4	O4	H4	117.6	120.2
C5	C4	O4	H4	239.0	239.8
O4	C4	C5	C6	54.3	61.5
O4	C4	C5	O5	296.3	301.4
O4	C4	C5	H5	175.9	181.3
H4	C4	C3	O3	66.0	66.6
H4	C4	C3	H3	305.9	306.2
C3	C4	H4	C5	119.7	119.5
C3	C4	H4	O4	243.3	239.8
C5	C4	H4	O4	123.6	120.3
H4	C4	C5	C6	293.3	301.3
H4	C4	C5	O5	175.3	181.2
H4	C4	C5	H5	54.9	61.1
H4	C4	O4	HO4	62.4	299.9
C1	O5	C5	C6	177.8	172.3
C6	C5	C4	O4	54.3	61.5
C6	C5	C4	H4	293.3	301.3
C4	C5	C6	O5	240.3	239.7
C4	C5	C6	H5	121.6	119.8
O5	C5	C6	H5	241.3	240.0
O6	C6	C5	H61	125.3	120.0
O6	C6	C5	H62	234.7	239.9
C5	C6	O6	HO6	180.0	180.0
H61	C6	C5	H62	109.4	120.0
C5	O5	C1	H1	181.9	187.7
O5	C5	C4	O4	296.3	301.4
O5	C5	C4	H4	175.3	181.2
C4	C5	O5	C6	121.0	120.1
C4	C5	O5	H5	239.6	240.0
C6	C5	O5	H5	118.7	119.9
O5	C5	C6	O6	189.7	300.1
O5	C5	C6	H61	64.4	180.1
O5	C5	C6	H62	314.9	60.1
H5	C5	C4	O4	175.9	181.3
H5	C5	C4	H4	54.9	61.1
C4	C5	H5	C6	237.3	240.2
C4	C5	H5	O5	120.3	120.3
C6	C5	H5	O5	243.1	240.1
H5	C5	C6	O6	308.3	60.0
H5	C5	C6	H61	183.0	300.1
H5	C5	C6	H62	73.6	180.1
O6	C6	C5	O5	189.7	300.1
O6	C6	C5	H5	308.3	60.0
C5	C6	O6	H61	234.7	240.0
C5	C6	O6	H62	125.3	120.0
H61	C6	O6	H62	250.5	240.0
H61	C6	C5	O5	64.4	180.1
H61	C6	C5	H5	183.0	300.1
C5	C6	H61	O6	123.5	120.0
C5	C6	H61	H62	241.8	240.0
O6	C6	H61	H62	118.3	120.0
H61	C6	O6	HO6	305.3	300.0
H62	C6	C5	O5	314.9	60.1
H62	C6	C5	H5	73.6	180.1
C5	C6	H62	O6	236.5	240.0
C5	C6	H62	H61	118.2	120.0
O6	C6	H62	H61	241.7	240.0
H62	C6	O6	HO6	54.7	59.9
HO1	O1	C1	O5	299.4	300.0
HO1	O1	C1	H1	60.4	59.9
HO2	O2	C2	H2	300.9	60.2
HO3	O3	C3	H3	60.4	299.7
HO4	O4	C4	H4	62.4	299.9
HO6	O6	C6	H61	305.3	300.0
HO6	O6	C6	H62	54.7	59.9