PDB Chemical Component GX1

Ideal Model

Chemical Description

Name 2'-deoxy-5'-O-{(S)-hydroxy[(2-sulfanylethyl)amino]phosphoryl}guanosine
Formula C12 H19 N6 O6 P S
Formal charge 0
Molecular weight 406.355 g/mol
Component type DNA linking
Nonstandard Parent Id DG

Chemical features

Atom count 45
Chiral atom count 3
Chiral atoms C1' C3' C4'
Observed leaving atoms OP2 HO3'
Bond count 47
Aromatic bond count 5

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-5'-O-{(S)-hydroxy[(2-sulfanylethyl)amino]phosphoryl}guanosine
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-(2-azanyl-6-oxo-1H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methoxy-N-(2-sulfanylethyl)phosphonamidic acid

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)NCCS)O3
SMILES (CACTVS) NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)(=O)NCCS)O3
Stereo SMILES (OpenEye) c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)CO[P@](=O)(NCCS)O)O)N=C(NC2=O)N
InChI descriptor InChI=1S/C12H19N6O6PS/c13-12-16-10-9(11(20)17-12)14-5-18(10)8-3-6(19)7(24-8)4-23-25(21,22)15-1-2-26/h5-8,19,26H,1-4H2,(H2,15,21,22)(H3,13,16,17,20)/t6-,7+,8+/m0/s1
InChIKey descriptor VONCJIFEOZVCEV-XLPZGREQSA-N

Status Information

Last modified 2011-06-04
Created 2009-09-09
Release status REL
Model PDB code 3JR4
Processing site RCSB