PDB Chemical Component GVR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GVR

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O28	C27	1.225	1.225
C27	N29	1.326	1.326
C27	C26	1.500	1.500
N29	O30	1.401	1.401
C26	C25	1.518	1.518
C26	N1	1.441	1.441
C25	C15	1.518	1.518
C15	C16	1.395	1.395
C15	C18	1.389	1.389
C16	C17	1.395	1.395
C17	C20	1.389	1.389
C20	C21	1.397	1.397
C20	C19	1.478	1.478
C21	C22	1.394	1.394
C19	C24	1.389	1.389
C19	C18	1.389	1.389
C24	C23	1.398	1.398
C23	C22	1.396	1.396
N1	S2	1.578	1.578
S2	O13	1.434	1.434
S2	O14	1.435	1.435
S2	C3	1.617	1.617
C3	C4	1.403	1.403
C3	C6	1.405	1.405
C4	C5	1.399	1.399
C5	C8	1.390	1.390
C8	C9	1.395	1.395
C8	C7	1.481	1.481
C9	C10	1.395	1.395
C7	C6	1.400	1.400
C7	C12	1.398	1.398
C12	C11	1.402	1.402
C11	C10	1.394	1.394
N29	H29	1.000	1.000
C26	H26	1.100	1.100
O30	H30	0.950	0.950
C25	H251	1.100	1.100
C25	H252	1.100	1.100
N1	H1	1.000	1.000
C16	H16	1.080	1.080
C18	H18	1.080	1.080
C17	H17	1.080	1.080
C21	H21	1.080	1.080
C22	H22	1.080	1.080
C24	H24	1.080	1.080
C23	H23	1.080	1.080
C4	H4	1.080	1.080
C6	H6	1.080	1.080
C5	H5	1.080	1.080
C9	H9	1.080	1.080
C10	H10	1.080	1.080
C12	H12	1.080	1.080
C11	H11	1.080	1.080

Bond Angles for GVR

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O28	C27	N29	119.6	119.6
O28	C27	C26	120.8	120.8
N29	C27	C26	119.6	119.6
C27	N29	O30	117.1	117.1
C27	N29	H29	121.5	121.5
C27	C26	C25	111.8	111.8
C27	C26	N1	112.3	112.3
C27	C26	H26	105.1	105.2
O30	N29	H29	121.4	121.4
N29	O30	H30	109.5	109.5
C25	C26	N1	107.2	107.2
C26	C25	C15	111.4	111.4
C25	C26	H26	110.5	110.4
C26	C25	H251	108.8	108.8
C26	C25	H252	108.4	108.4
C26	N1	S2	119.3	119.3
N1	C26	H26	109.9	109.9
C26	N1	H1	106.3	106.3
C25	C15	C16	119.8	119.8
C25	C15	C18	119.5	119.5
C15	C25	H251	108.8	108.8
C15	C25	H252	108.4	108.4
C16	C15	C18	120.7	120.7
C15	C16	C17	120.8	120.8
C15	C16	H16	119.6	119.6
C15	C18	C19	120.7	120.7
C15	C18	H18	119.6	119.6
C16	C17	C20	120.1	120.1
C17	C16	H16	119.6	119.6
C16	C17	H17	120.0	120.0
C17	C20	C21	122.0	122.0
C17	C20	C19	119.2	119.2
C20	C17	H17	119.9	119.9
C21	C20	C19	118.7	118.7
C20	C21	C22	119.4	119.4
C20	C21	H21	120.3	120.3
C20	C19	C24	120.0	120.0
C20	C19	C18	118.5	118.5
C21	C22	C23	121.7	121.7
C22	C21	H21	120.3	120.3
C21	C22	H22	119.1	119.1
C24	C19	C18	121.6	121.6
C19	C24	C23	119.4	119.4
C19	C24	H24	120.3	120.3
C19	C18	H18	119.6	119.6
C24	C23	C22	120.7	120.7
C23	C24	H24	120.3	120.3
C24	C23	H23	119.6	119.6
C23	C22	H22	119.1	119.1
C22	C23	H23	119.7	119.7
N1	S2	O13	109.2	109.2
N1	S2	O14	107.8	107.8
N1	S2	C3	107.5	107.5
S2	N1	H1	106.3	106.3
O13	S2	O14	112.4	112.4
O13	S2	C3	110.9	110.9
O14	S2	C3	108.9	108.9
S2	C3	C4	118.1	118.1
S2	C3	C6	122.2	122.2
C4	C3	C6	119.6	119.6
C3	C4	C5	121.6	121.6
C3	C4	H4	119.2	119.2
C3	C6	C7	120.5	120.5
C3	C6	H6	119.7	119.7
C4	C5	C8	120.3	120.3
C5	C4	H4	119.2	119.2
C4	C5	H5	119.8	119.8
C5	C8	C9	121.7	121.7
C5	C8	C7	118.7	118.7
C8	C5	H5	119.8	119.8
C9	C8	C7	119.6	119.6
C8	C9	C10	120.1	120.1
C8	C9	H9	120.0	120.0
C8	C7	C6	119.2	119.2
C8	C7	C12	118.3	118.3
C9	C10	C11	120.6	120.6
C10	C9	H9	119.9	119.9
C9	C10	H10	119.7	119.7
C6	C7	C12	122.5	122.5
C7	C6	H6	119.8	119.8
C7	C12	C11	120.1	120.1
C7	C12	H12	120.0	120.0
C12	C11	C10	121.3	121.3
C11	C12	H12	120.0	120.0
C12	C11	H11	119.3	119.3
C11	C10	H10	119.7	119.7
C10	C11	H11	119.3	119.3
H251	C25	H252	111.0	111.0

Torsion Angles for GVR

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N29	C27	O28	C26	180.4	180.4
O28	C27	N29	O30	0.2	0.2
O28	C27	N29	H29	180.2	180.2
O28	C27	C26	C25	81.4	81.4
O28	C27	C26	N1	202.0	202.0
O28	C27	C26	H26	321.5	321.5
O28	C27	N29	C26	179.6	179.6
N29	C27	C26	C25	261.0	261.0
N29	C27	C26	N1	21.6	21.6
N29	C27	C26	H26	141.1	141.1
O30	N29	C27	H29	180.0	180.0
C27	N29	O30	H30	39.7	39.7
O28	C27	C26	N29	180.4	180.4
C26	C27	N29	O30	180.6	180.6
C26	C27	N29	H29	0.6	0.6
C25	C26	C27	N1	239.4	239.4
C27	C26	C25	C15	193.9	193.9
C25	C26	C27	H26	119.9	119.9
C27	C26	C25	H251	313.9	313.9
C27	C26	C25	H252	74.7	74.7
C27	C26	N1	S2	94.4	94.4
N1	C26	C27	H26	240.5	240.5
C27	C26	N1	H1	214.4	214.4
O30	N29	C27	C26	180.6	180.6
C27	N29	O30	H29	180.0	180.0
C27	C26	C25	N1	123.5	123.5
C27	C26	C25	H26	243.3	243.2
C25	C26	N1	S2	217.6	217.6
N1	C26	C25	H26	119.8	119.7
C25	C26	N1	H1	337.6	337.6
C26	C25	C15	C16	242.7	242.7
C26	C25	C15	C18	64.5	64.5
C15	C25	C26	H251	240.0	240.0
C15	C25	C26	H252	119.1	119.1
H251	C25	C26	H252	239.1	239.1
C27	C26	N1	C25	236.8	236.8
C27	C26	N1	H26	116.7	116.7
N1	C26	C25	C15	70.4	70.4
C25	C26	N1	H26	239.9	239.9
N1	C26	C25	H251	190.4	190.4
N1	C26	C25	H252	311.2	311.2
C26	N1	S2	O13	310.5	310.5
C26	N1	S2	O14	188.2	188.2
C26	N1	S2	C3	70.9	70.9
S2	N1	C26	H1	240.0	240.0
C15	C25	C26	N1	70.4	70.4
C15	C25	C26	H26	310.6	310.7
C26	C25	C15	H251	120.0	120.0
C26	C25	C15	H252	240.8	240.8
C16	C15	C25	C18	178.2	178.2
C25	C15	C16	C17	181.0	181.0
C25	C15	C16	H16	1.0	1.0
C25	C15	C18	C19	179.2	179.2
C25	C15	C18	H18	359.2	359.2
H251	C25	C15	H252	120.8	120.8
C25	C15	C16	C18	181.8	181.8
C16	C15	C25	H251	122.7	122.7
C16	C15	C25	H252	1.9	1.9
C16	C15	C18	C19	1.0	1.0
C16	C15	C18	H18	181.0	181.0
C15	C16	C17	C20	0.6	0.6
C17	C16	C15	H16	180.0	180.0
C15	C16	C17	H17	180.6	180.6
C25	C15	C18	C16	178.2	178.2
C18	C15	C25	H251	304.5	304.5
C18	C15	C25	H252	183.7	183.7
C18	C15	C16	C17	359.1	359.1
C18	C15	C16	H16	179.1	179.1
C20	C19	C18	C15	359.2	359.2
C24	C19	C18	C15	179.6	179.6
C19	C18	C15	H18	180.0	180.0
C17	C16	C15	C18	359.1	359.1
C15	C16	C17	H16	180.0	180.0
C16	C17	C20	C21	180.1	180.1
C16	C17	C20	C19	359.6	359.6
C20	C17	C16	H17	180.0	180.0
C20	C17	C16	H16	180.6	180.6
C16	C17	C20	H17	180.0	180.0
C21	C20	C17	C19	180.5	180.5
C17	C20	C21	C22	180.3	180.3
C17	C20	C21	H21	0.3	0.3
C17	C20	C19	C24	180.1	180.1
C17	C20	C19	C18	0.5	0.5
C17	C20	C21	C19	179.5	179.5
C21	C20	C17	H17	0.1	0.1
C21	C20	C19	C24	359.6	359.6
C21	C20	C19	C18	180.0	180.0
C20	C21	C22	C23	358.7	358.7
C22	C21	C20	H21	180.0	180.0
C20	C21	C22	H22	178.7	178.7
C15	C18	C19	C20	359.2	359.2
C17	C20	C19	C21	180.5	180.5
C19	C20	C17	H17	179.6	179.6
C19	C20	C21	C22	0.8	0.8
C19	C20	C21	H21	180.8	180.8
C24	C19	C20	C18	179.5	179.5
C20	C19	C24	C23	0.5	0.5
C20	C19	C24	H24	180.5	180.5
C20	C19	C18	H18	179.2	179.2
C22	C21	C20	C19	0.8	0.8
C20	C21	C22	H21	180.0	180.0
C24	C23	C22	C21	1.4	1.4
C23	C22	C21	H22	180.0	180.0
C21	C22	C23	H23	181.4	181.4
C15	C18	C19	C24	179.6	179.6
C20	C19	C24	C18	180.5	180.5
C24	C19	C18	H18	359.6	359.6
C19	C24	C23	C22	359.0	359.0
C23	C24	C19	H24	180.0	180.0
C19	C24	C23	H23	179.0	179.0
C15	C18	C19	H18	180.0	180.0
C20	C19	C18	C24	179.5	179.5
C18	C19	C24	C23	180.0	180.0
C18	C19	C24	H24	0.0	0.0
C21	C22	C23	C24	1.4	1.4
C23	C24	C19	C18	180.0	180.0
C19	C24	C23	H24	180.0	180.0
C24	C23	C22	H22	181.4	181.4
C22	C23	C24	H23	180.0	180.0
C23	C22	C21	H21	178.7	178.7
C21	C22	C23	H22	180.0	180.0
C22	C23	C24	H24	179.0	179.0
C24	C23	C22	H23	180.0	180.0
S2	N1	C26	H26	337.7	337.7
C26	N1	S2	H1	120.0	120.0
O13	S2	N1	O14	122.3	122.3
O13	S2	N1	C3	239.6	239.6
O14	S2	N1	C3	117.2	117.2
N1	S2	C3	C4	68.2	68.2
N1	S2	C3	C6	248.0	248.0
N1	S2	O13	O14	240.5	240.5
N1	S2	O13	C3	118.3	118.3
O13	S2	N1	H1	190.5	190.5
O14	S2	O13	C3	237.8	237.8
O13	S2	C3	C4	187.6	187.6
O13	S2	C3	C6	7.3	7.3
N1	S2	O14	O13	120.3	120.3
N1	S2	O14	C3	243.7	243.7
O14	S2	N1	H1	68.2	68.2
O13	S2	O14	C3	123.3	123.3
O14	S2	C3	C4	311.7	311.7
O14	S2	C3	C6	131.5	131.5
N1	S2	C3	O13	240.7	240.7
N1	S2	C3	O14	116.5	116.5
C3	S2	N1	H1	310.9	310.9
O13	S2	C3	O14	235.8	235.8
C4	C3	S2	C6	180.3	180.3
S2	C3	C4	C5	179.8	179.8
S2	C3	C4	H4	359.8	359.8
S2	C3	C6	C7	180.3	180.3
S2	C3	C6	H6	0.3	0.3
S2	C3	C4	C6	179.7	179.7
C4	C3	C6	C7	0.0	0.0
C4	C3	C6	H6	180.0	180.0
C3	C4	C5	C8	359.8	359.8
C5	C4	C3	H4	180.0	180.0
C3	C4	C5	H5	179.7	179.7
S2	C3	C6	C4	180.3	180.3
C6	C3	C4	C5	0.1	0.1
C6	C3	C4	H4	180.1	180.1
C8	C7	C6	C3	0.0	0.0
C3	C6	C7	C12	179.9	179.9
C7	C6	C3	H6	180.0	180.0
C5	C4	C3	C6	0.1	0.1
C3	C4	C5	H4	180.0	180.0
C4	C5	C8	C9	180.2	180.2
C4	C5	C8	C7	0.3	0.3
C8	C5	C4	H5	180.0	180.0
C8	C5	C4	H4	179.8	179.8
C4	C5	C8	H5	180.0	180.0
C9	C8	C5	C7	179.9	179.9
C5	C8	C9	C10	180.2	180.2
C5	C8	C9	H9	0.1	0.1
C5	C8	C7	C6	359.8	359.8
C5	C8	C7	C12	179.9	179.9
C5	C8	C9	C7	180.1	180.1
C9	C8	C5	H5	0.3	0.3
C9	C8	C7	C6	179.9	179.9
C9	C8	C7	C12	360.0	360.0
C8	C9	C10	C11	0.5	0.5
C10	C9	C8	H9	180.0	180.0
C8	C9	C10	H10	180.5	180.5
C3	C6	C7	C8	0.0	0.0
C5	C8	C7	C9	179.9	179.9
C7	C8	C5	H5	180.3	180.3
C7	C8	C9	C10	0.1	0.1
C7	C8	C9	H9	180.1	180.1
C6	C7	C8	C12	179.9	179.9
C8	C7	C6	H6	180.0	180.0
C8	C7	C12	C11	359.4	359.4
C8	C7	C12	H12	179.3	179.3
C10	C9	C8	C7	0.1	0.1
C8	C9	C10	H9	180.0	180.0
C12	C11	C10	C9	358.8	358.8
C11	C10	C9	H10	180.0	180.0
C9	C10	C11	H11	178.8	178.8
C3	C6	C7	H6	180.0	180.0
C8	C7	C6	C12	180.1	180.1
C6	C7	C12	C11	179.5	179.5
C6	C7	C12	H12	359.5	359.5
C8	C7	C12	C6	179.9	179.9
C12	C7	C6	H6	359.9	359.9
C7	C12	C11	C10	1.3	1.3
C11	C12	C7	H12	180.0	180.0
C7	C12	C11	H11	181.3	181.3
C9	C10	C11	C12	358.8	358.8
C7	C12	C11	H12	180.0	180.0
C12	C11	C10	H10	178.8	178.8
C10	C11	C12	H11	180.0	180.0
C11	C10	C9	H9	180.5	180.5
C9	C10	C11	H10	180.0	180.0
C10	C11	C12	H12	181.3	181.3
C12	C11	C10	H11	180.0	180.0
H29	N29	C27	C26	0.6	0.6
C27	N29	H29	O30	180.0	180.0
H29	N29	O30	H30	219.7	219.7
C27	C26	H26	C25	120.8	120.8
C27	C26	H26	N1	238.9	238.9
C25	C26	H26	N1	118.1	118.1
H26	C26	C25	C15	310.6	310.7
H26	C26	C25	H251	70.6	70.7
H26	C26	C25	H252	191.4	191.5
H26	C26	N1	S2	337.7	337.7
H26	C26	N1	H1	97.7	97.7
H30	O30	N29	H29	219.7	219.7
H251	C25	C26	N1	190.4	190.4
C26	C25	H251	C15	238.4	238.4
H251	C25	C26	H26	70.6	70.7
C26	C25	H251	H252	119.2	119.2
H251	C25	C15	C16	122.7	122.7
H251	C25	C15	C18	304.5	304.5
C15	C25	H251	H252	240.8	240.8
H252	C25	C26	N1	311.2	311.2
C26	C25	H252	C15	121.1	121.1
H252	C25	C26	H26	191.4	191.5
C26	C25	H252	H251	240.5	240.5
H252	C25	C15	C16	1.9	1.9
H252	C25	C15	C18	183.7	183.7
C15	C25	H252	H251	119.5	119.5
C26	N1	H1	S2	231.9	231.9
H1	N1	C26	H26	97.7	97.7
H1	N1	S2	O13	190.5	190.5
H1	N1	S2	O14	68.2	68.2
H1	N1	S2	C3	310.9	310.9
H16	C16	C15	C18	179.1	179.1
C15	C16	H16	C17	180.0	180.0
H16	C16	C17	C20	180.6	180.6
H16	C16	C17	H17	0.6	0.6
C15	C18	H18	C19	180.0	180.0
C16	C17	H17	C20	180.0	180.0
H17	C17	C16	H16	0.6	0.6
H17	C17	C20	C21	0.1	0.1
H17	C17	C20	C19	179.6	179.6
H21	C21	C20	C19	180.8	180.8
C20	C21	H21	C22	180.0	180.0
H21	C21	C22	C23	178.7	178.7
H21	C21	C22	H22	358.7	358.7
C21	C22	H22	C23	180.0	180.0
H22	C22	C21	H21	358.7	358.7
H22	C22	C23	H23	1.4	1.4
H24	C24	C19	C18	0.0	0.0
C19	C24	H24	C23	180.0	180.0
H24	C24	C23	C22	179.0	179.0
H24	C24	C23	H23	359.0	359.0
C24	C23	H23	C22	180.0	180.0
H23	C23	C24	H24	359.0	359.0
H23	C23	C22	H22	1.4	1.4
H4	C4	C3	C6	180.1	180.1
C3	C4	H4	C5	180.0	180.0
H4	C4	C5	C8	179.8	179.8
H4	C4	C5	H5	359.7	359.7
C3	C6	H6	C7	180.0	180.0
H6	C6	C7	C12	359.9	359.9
C4	C5	H5	C8	180.0	180.0
H5	C5	C4	H4	359.7	359.7
H5	C5	C8	C9	0.3	0.3
H5	C5	C8	C7	180.3	180.3
H9	C9	C8	C7	180.1	180.1
C8	C9	H9	C10	180.0	180.0
H9	C9	C10	C11	180.5	180.5
H9	C9	C10	H10	0.5	0.5
C9	C10	H10	C11	180.0	180.0
H10	C10	C9	H9	0.5	0.5
H10	C10	C11	H11	358.8	358.8
C7	C12	H12	C11	180.0	180.0
H12	C12	C11	C10	181.3	181.3
H12	C12	C11	H11	1.3	1.3
C12	C11	H11	C10	180.0	180.0
H11	C11	C12	H12	1.3	1.3
H11	C11	C10	H10	358.8	358.8