PDB Chemical Component GVP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GVP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C15 C16 1.379 1.396
C16 C17 1.390 1.396
C17 C18 1.386 1.394
C14 C19 1.389 1.393
C18 C19 1.377 1.396
C17 C20 1.469 1.436
C20 C21 1.401 1.369
C21 N22 1.334 1.364
N22 N23 1.357 1.344
C20 C24 1.373 1.404
N23 C24 1.346 1.336
C3 H3 1.079 1.087
C7 H7 1.080 1.087
C4 H4 1.080 1.087
C6 H6 1.079 1.087
C9 H9C1 1.100 1.100
C9 H9C2 1.100 1.098
C13 H131 1.100 1.098
C13 H132 1.100 1.099
C10 H101 1.100 1.097
C10 H102 1.100 1.096
N11 H11 1.000 1.020
C12 H121 1.100 1.096
C12 H122 1.100 1.096
C15 H15 1.080 1.087
CL1 C2 1.735 1.721
C2 C3 1.383 1.395
C3 C4 1.378 1.394
C4 C5 1.393 1.394
C5 C6 1.393 1.394
C2 C7 1.386 1.395
C6 C7 1.380 1.395
C5 C8 1.538 1.555
C8 C9 1.544 1.572
C9 C10 1.521 1.534
C10 N11 1.490 1.458
N11 C12 1.492 1.459
C8 C13 1.539 1.572
C12 C13 1.517 1.530
C8 C14 1.540 1.555
C14 C15 1.392 1.393
C19 H19 1.080 1.087
C16 H16 1.081 1.087
C18 H18 1.080 1.087
C21 H21 1.080 1.082
C24 H24 1.080 1.081
N22 H22 1.000 1.012

Bond Angles for GVP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C15 C16 C17 120.6 120.0
C16 C15 H15 119.8 119.4
C14 C15 C16 120.5 119.9
C15 C16 H16 119.7 119.1
C16 C17 C18 118.9 120.0
C16 C17 C20 120.8 120.0
C17 C16 H16 119.7 120.9
C17 C18 C19 120.6 120.0
C18 C17 C20 120.1 120.0
C17 C18 H18 119.7 120.9
C14 C19 C18 120.7 119.9
C8 C14 C19 119.3 119.9
C15 C14 C19 118.7 120.2
C14 C19 H19 119.6 120.6
C18 C19 H19 119.7 119.5
C19 C18 H18 119.7 119.1
C17 C20 C21 127.3 124.0
C17 C20 C24 127.7 131.1
C20 C21 N22 111.2 105.7
C21 C20 C24 104.6 104.9
C20 C21 H21 124.4 133.0
C21 N22 N23 105.1 113.8
N22 C21 H21 124.4 121.3
C21 N22 H22 127.5 127.9
N22 N23 C24 111.4 103.1
N23 N22 H22 127.5 118.3
C20 C24 N23 107.6 112.5
C20 C24 H24 126.2 128.9
N23 C24 H24 126.2 118.6
C2 C3 H3 119.9 120.8
C4 C3 H3 119.9 119.2
C2 C7 H7 119.9 120.8
C6 C7 H7 119.9 119.2
C3 C4 H4 119.7 119.5
C5 C4 H4 119.7 120.6
C5 C6 H6 119.8 120.6
C7 C6 H6 119.8 119.5
H9C1 C9 H9C2 112.7 106.2
C8 C9 H9C1 108.1 109.2
C10 C9 H9C1 108.1 108.5
C8 C9 H9C2 107.2 109.4
C10 C9 H9C2 107.2 108.7
H131 C13 H132 112.4 105.9
C8 C13 H131 108.3 109.4
C12 C13 H131 108.3 109.0
C8 C13 H132 107.4 109.4
C12 C13 H132 107.4 109.3
H101 C10 H102 109.3 106.7
C9 C10 H101 109.6 110.1
N11 C10 H101 109.5 110.1
C9 C10 H102 109.6 108.9
N11 C10 H102 109.6 108.8
C10 N11 H11 108.8 109.4
C12 N11 H11 108.8 109.5
H121 C12 H122 109.3 106.8
N11 C12 H121 109.6 108.6
C13 C12 H121 109.6 108.9
N11 C12 H122 109.7 110.6
C13 C12 H122 109.6 111.1
C14 C15 H15 119.7 120.7
CL1 C2 C3 119.9 120.0
CL1 C2 C7 120.4 120.0
C2 C3 C4 120.2 120.0
C3 C2 C7 119.7 120.0
C3 C4 C5 120.6 119.9
C4 C5 C6 118.8 120.2
C4 C5 C8 120.7 119.9
C5 C6 C7 120.5 119.9
C6 C5 C8 120.5 119.9
C2 C7 C6 120.2 120.0
C5 C8 C9 112.5 108.5
C5 C8 C13 113.0 112.5
C5 C8 C14 109.2 107.4
C8 C9 C10 113.5 114.5
C9 C8 C13 106.9 103.9
C9 C8 C14 105.0 114.4
C9 C10 N11 109.2 112.0
C10 N11 C12 111.4 111.1
N11 C12 C13 109.2 110.7
C8 C13 C12 113.2 113.5
C13 C8 C14 109.9 110.3
C8 C14 C15 121.9 119.9

Torsion Angles for GVP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C15 C16 C17 C18 1.9 360.0
C15 C16 C17 C20 176.5 180.0
C17 C16 C15 H16 180.0 180.0
C16 C15 C14 C19 359.3 360.0
C14 C15 C16 H15 180.0 180.0
C8 C14 C15 C16 182.2 180.0
C17 C16 C15 H15 179.2 180.0
C14 C15 C16 C17 359.2 0.0
C15 C16 C17 H16 180.0 180.0
C16 C17 C18 C19 358.4 0.0
C18 C17 C16 C20 185.4 179.9
C16 C17 C18 H18 178.4 180.0
C16 C17 C20 C21 346.8 150.0
C16 C17 C20 C24 174.8 329.9
C16 C17 C18 C20 174.6 180.1
C18 C17 C16 H16 181.9 180.0
C14 C19 C18 C17 0.1 360.0
C17 C18 C19 H19 180.1 180.1
C19 C18 C17 H18 180.0 180.0
C18 C17 C20 C21 161.3 330.0
C18 C17 C20 C24 349.3 150.0
C19 C14 C15 C16 359.3 360.0
C17 C18 C19 C14 0.1 360.0
C18 C19 C14 H19 180.0 180.1
C14 C19 C18 H18 180.1 180.0
C19 C14 C15 H15 179.3 180.0
C5 C8 C14 C19 62.0 90.0
C9 C8 C14 C19 301.1 329.5
C13 C8 C14 C19 186.4 212.9
C8 C14 C19 C15 177.2 180.0
C19 C18 C17 C20 183.8 180.0
C17 C18 C19 H18 180.0 180.0
C8 C14 C19 C18 178.3 180.0
C15 C14 C19 C18 1.0 0.0
C14 C19 C18 H19 180.0 179.9
C16 C17 C20 C18 185.5 179.9
C20 C17 C16 H16 356.5 0.0
C20 C17 C18 C19 183.8 180.0
C20 C17 C18 H18 3.8 360.0
C17 C20 C21 N22 183.6 180.0
C21 C20 C17 C24 172.0 180.0
C17 C20 C21 H21 3.6 359.9
C17 C20 C24 N23 175.9 180.0
C17 C20 C24 H24 355.9 360.0
C17 C20 C21 C24 186.5 180.0
C20 C21 N22 N23 2.2 360.0
N22 C21 C20 H21 180.0 180.1
C20 C21 N22 H22 182.2 179.7
C21 C20 C24 N23 2.4 0.0
C21 C20 C24 H24 182.4 180.0
N22 C21 C20 C24 357.1 0.0
C20 C21 N22 H21 180.0 179.9
C21 N22 N23 C24 359.4 0.0
N23 N22 C21 H22 180.0 180.2
N23 N22 C21 H21 182.2 180.1
C21 N22 N23 H22 180.0 179.8
C20 C24 N23 N22 358.8 360.0
N22 N23 C24 H24 178.8 180.0
C17 C20 C24 C21 173.5 180.0
C24 C20 C21 N22 357.1 0.0
C24 C20 C21 H21 177.1 179.9
N22 N23 C24 C20 358.8 360.0
N23 C24 C20 H24 180.0 180.1
C24 N23 N22 H22 179.4 180.3
C20 C24 N23 H24 180.0 180.0
H3 C3 C4 H4 358.9 360.0
CL1 C2 C3 H3 0.0 360.0
C2 C3 H3 C4 180.0 180.0
H3 C3 C2 C7 180.9 180.0
H3 C3 C4 C5 178.9 180.0
H7 C7 C6 H6 0.8 360.0
CL1 C2 C7 H7 0.1 0.1
C3 C2 C7 H7 179.2 180.0
C5 C6 C7 H7 180.8 180.0
C2 C7 H7 C6 180.0 180.0
H4 C4 C3 H3 358.9 360.0
C2 C3 C4 H4 178.9 180.0
C3 C4 H4 C5 180.0 180.0
H4 C4 C5 C6 181.1 180.0
H4 C4 C5 C8 359.0 359.9
H6 C6 C7 H7 0.8 360.0
C4 C5 C6 H6 179.0 180.0
C5 C6 H6 C7 180.0 180.0
H6 C6 C5 C8 1.2 0.1
C2 C7 C6 H6 180.8 180.0
C8 C9 H9C1 H9C2 118.4 242.1
C10 C9 H9C1 H9C2 241.7 116.6
H9C1 C9 C10 H101 57.2 189.8
H9C1 C9 C10 H102 177.1 306.5
C5 C8 C9 H9C1 191.0 49.1
C8 C9 H9C1 C10 236.7 125.5
H9C1 C9 C8 C13 66.4 289.3
H9C1 C9 C8 C14 309.7 169.0
H9C1 C9 C10 N11 297.2 66.9
C8 C9 H9C2 H9C1 241.1 117.8
C10 C9 H9C2 H9C1 118.9 243.5
H9C2 C9 C10 H101 295.4 304.8
H9C2 C9 C10 H102 55.4 61.5
C5 C8 C9 H9C2 312.8 293.3
C8 C9 H9C2 C10 122.2 234.3
H9C2 C9 C8 C13 188.2 173.4
H9C2 C9 C8 C14 71.5 53.2
H9C2 C9 C10 N11 175.4 181.9
C8 C13 H131 H132 118.5 242.1
C12 C13 H131 H132 241.5 117.5
H131 C13 C12 H121 61.5 302.0
H131 C13 C12 H122 301.7 59.3
C5 C8 C13 H131 49.8 67.2
C9 C8 C13 H131 174.1 184.3
N11 C12 C13 H131 181.5 182.7
C8 C13 H131 C12 237.0 124.6
H131 C13 C8 C14 287.6 307.3
C8 C13 H132 H131 241.0 117.9
C12 C13 H132 H131 119.0 242.7
H132 C13 C12 H121 299.9 57.3
H132 C13 C12 H122 180.1 174.7
C5 C8 C13 H132 171.4 311.6
C9 C8 C13 H132 295.7 68.7
N11 C12 C13 H132 59.9 298.1
C8 C13 H132 C12 122.0 235.2
H132 C13 C8 C14 49.2 191.7
H101 C10 C9 H9C1 57.2 189.8
H101 C10 C9 H9C2 295.4 304.8
C9 C10 H101 H102 120.1 118.1
N11 C10 H101 H102 239.9 242.0
H101 C10 N11 H11 300.6 55.0
C8 C9 C10 H101 177.2 67.5
C9 C10 H101 N11 240.2 236.0
H101 C10 N11 C12 180.6 294.0
H102 C10 C9 H9C1 177.1 306.5
H102 C10 C9 H9C2 55.4 61.5
C9 C10 H102 H101 239.9 241.2
N11 C10 H102 H101 120.0 118.8
H102 C10 N11 H11 180.7 298.3
C8 C9 C10 H102 297.1 184.2
C9 C10 H102 N11 119.9 122.4
H102 C10 N11 C12 60.7 177.4
H11 N11 C10 H101 300.6 55.0
H11 N11 C10 H102 180.7 298.3
H11 N11 C12 H121 60.1 60.3
H11 N11 C12 H122 180.0 303.4
C9 C10 N11 H11 60.6 177.9
C10 N11 H11 C12 238.4 238.0
H11 N11 C12 C13 300.1 179.7
H121 C12 C13 H131 61.5 302.0
H121 C12 C13 H132 299.9 57.3
H121 C12 N11 H11 60.1 60.3
N11 C12 H121 H122 120.1 240.7
C13 C12 H121 H122 239.9 120.0
C10 N11 C12 H121 180.1 181.3
N11 C12 H121 C13 240.2 120.6
C8 C13 C12 H121 181.5 179.8
H122 C12 C13 H131 301.7 59.3
H122 C12 C13 H132 180.1 174.7
H122 C12 N11 H11 180.0 303.4
N11 C12 H122 H121 239.9 118.0
C13 C12 H122 H121 120.1 241.4
C10 N11 C12 H122 300.0 64.4
N11 C12 H122 C13 119.9 236.6
C8 C13 C12 H122 61.7 297.1
H15 C15 C16 C17 179.2 180.0
C14 C15 H15 C16 180.0 180.0
H15 C15 C16 H16 359.2 360.0
H15 C15 C14 C19 179.3 180.0
C8 C14 C15 H15 2.2 0.0
CL1 C2 C3 C4 180.1 179.9
C3 C2 CL1 C7 180.8 180.0
CL1 C2 C7 C6 180.1 180.0
C4 C3 C2 H3 180.0 180.0
CL1 C2 C3 C7 179.2 180.0
C2 C3 C4 C5 358.9 0.0
C3 C2 C7 C6 359.3 -0.0
C2 C3 C4 H3 180.0 180.0
C5 C4 C3 H4 180.0 180.0
C4 C3 C2 C7 0.9 360.0
C3 C4 C5 C6 1.1 360.0
C3 C4 C5 C8 179.0 179.9
C5 C4 C3 H3 178.9 180.0
C3 C4 C5 H4 180.0 180.0
C4 C5 C6 C7 359.0 0.0
C6 C5 C4 C8 182.2 180.1
C4 C5 C8 C9 20.6 214.1
C4 C5 C8 C13 141.8 328.4
C4 C5 C8 C14 264.4 90.0
C6 C5 C4 H4 181.1 180.0
C7 C6 C5 H6 180.0 180.0
C4 C5 C6 C8 177.8 179.9
C2 C7 C6 C5 0.8 0.0
C6 C5 C8 C9 198.4 34.1
C6 C5 C8 C13 319.6 148.4
C6 C5 C8 C14 82.2 269.9
C7 C2 C3 H3 180.9 180.0
C6 C7 C2 H7 180.0 180.0
CL1 C2 C7 C3 180.8 180.0
C7 C2 C3 C4 0.9 360.0
C5 C6 C7 C2 0.8 0.0
C2 C7 C6 H7 180.0 180.0
C5 C6 C7 H6 180.0 180.0
C7 C6 C5 C8 181.2 180.1
C8 C5 C4 H4 359.0 359.9
C8 C5 C6 H6 1.2 0.1
C4 C5 C8 C6 182.2 180.1
C8 C5 C6 C7 181.2 180.1
C5 C8 C9 C10 71.0 171.0
C9 C8 C5 C13 238.8 245.7
C9 C8 C5 C14 116.2 124.1
C5 C8 C13 C12 289.8 189.2
C13 C8 C5 C14 237.4 238.4
C5 C8 C14 C15 239.1 270.0
H9C1 C9 C8 H9C2 238.2 115.8
C10 C9 C8 H9C1 240.0 121.9
C10 C9 C8 H9C2 118.2 237.7
C5 C8 C9 C13 124.6 119.8
C5 C8 C9 C14 241.4 240.1
C8 C9 C10 N11 57.2 304.6
C9 C8 C13 C12 54.1 306.3
C13 C8 C9 C14 116.8 120.3
C9 C8 C14 C15 118.2 149.5
H9C1 C9 C10 H9C2 121.8 245.0
C8 C9 C10 H9C1 120.0 237.7
C8 C9 C10 H9C2 241.8 122.7
H101 C10 C9 H102 240.1 243.3
N11 C10 C9 H101 240.0 237.1
N11 C10 C9 H102 120.1 120.4
C10 C9 C8 C13 306.4 51.2
C10 C9 C8 C14 189.7 290.9
C9 C10 N11 C12 300.6 56.9
N11 C10 C9 H9C1 297.2 66.9
N11 C10 C9 H9C2 175.4 181.9
H101 C10 N11 H102 119.9 116.7
C9 C10 N11 H101 120.0 122.9
C9 C10 N11 H102 239.9 239.5
C12 N11 C10 H11 240.0 239.0
C10 N11 C12 C13 60.1 300.7
C12 N11 C10 H101 180.6 294.0
C12 N11 C10 H102 60.7 177.4
C10 N11 C12 H11 120.0 121.0
H121 C12 N11 H122 240.1 116.9
C13 C12 N11 H121 240.0 119.5
C13 C12 N11 H122 120.1 236.3
C8 C13 C12 N11 301.5 60.5
C13 C8 C9 H9C1 66.4 289.3
C13 C8 C9 H9C2 188.2 173.4
H131 C13 C8 H132 238.4 115.7
C12 C13 C8 H131 240.0 122.0
C12 C13 C8 H132 118.4 237.6
C5 C8 C13 C9 235.7 242.9
C5 C8 C13 C14 122.2 119.9
C13 C8 C9 C10 306.4 51.2
C9 C8 C13 C14 246.5 237.0
N11 C12 C13 C8 301.5 60.5
C13 C8 C14 C15 3.5 32.9
H131 C13 C12 H132 121.6 244.7
C8 C13 C12 H131 120.0 237.8
C8 C13 C12 H132 241.6 122.4
C13 C12 N11 H11 300.1 179.7
H121 C12 C13 H122 119.9 242.7
N11 C12 C13 H121 120.0 240.7
N11 C12 C13 H122 239.9 123.4
C12 C13 C8 C14 167.6 69.3
C15 C14 C8 C19 177.1 180.0
C8 C14 C19 H19 358.3 359.9
C14 C8 C9 H9C1 309.7 169.0
C14 C8 C9 H9C2 71.5 53.2
C14 C8 C13 H131 287.6 307.3
C14 C8 C13 H132 49.2 191.7
C5 C8 C14 C9 120.9 120.5
C5 C8 C14 C13 235.6 237.1
C14 C8 C9 C10 189.7 290.9
C9 C8 C14 C13 114.7 116.6
C14 C8 C13 C12 167.6 69.3
C16 C15 C14 H15 180.0 180.0
C14 C15 C16 H16 179.2 180.0
C8 C14 C15 C19 182.9 180.0
C15 C14 C19 H19 181.1 179.9
C14 C19 H19 C18 180.0 180.1
H19 C19 C18 H18 0.1 0.1
C15 C16 H16 C17 180.0 180.0
H16 C16 C15 H15 359.2 360.0
H16 C16 C17 C18 181.9 180.0
H16 C16 C17 C20 356.5 0.0
C17 C18 H18 C19 180.0 180.0
H18 C18 C17 C20 3.8 360.0
H18 C18 C19 H19 0.1 0.1
C20 C21 H21 N22 180.0 180.1
H21 C21 C20 C24 177.1 179.9
H21 C21 N22 N23 182.2 180.1
H21 C21 N22 H22 2.2 359.8
C20 C24 H24 N23 180.0 180.1
C21 N22 H22 N23 180.0 180.3
H22 N22 C21 H21 2.2 359.8
H22 N22 N23 C24 179.4 180.3