PDB Chemical Component GVC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for GVC
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O5 |
C1 |
1.222 |
1.249 |
| C1 |
C35 |
1.490 |
1.431 |
| C35 |
N10 |
1.348 |
1.335 |
| C35 |
N9 |
1.359 |
1.366 |
| N9 |
C34 |
1.333 |
1.313 |
| C34 |
C36 |
1.495 |
1.476 |
| N10 |
N8 |
1.387 |
1.346 |
| C34 |
N8 |
1.312 |
1.366 |
| N8 |
C30 |
1.330 |
1.383 |
| C30 |
C31 |
1.386 |
1.394 |
| C31 |
C32 |
1.382 |
1.395 |
| C32 |
C33 |
1.384 |
1.395 |
| C32 |
CL5 |
1.768 |
1.721 |
| C30 |
C29 |
1.410 |
1.395 |
| C33 |
C28 |
1.393 |
1.395 |
| C29 |
C28 |
1.407 |
1.395 |
| C28 |
CL1 |
1.820 |
1.721 |
| C1 |
OXT |
1.318 |
1.369 |
| OXT |
HOT |
0.950 |
0.981 |
| C36 |
H361 |
1.115 |
1.103 |
| C36 |
H362 |
1.115 |
1.103 |
| C36 |
H363 |
1.115 |
1.103 |
| C31 |
H31 |
1.104 |
1.089 |
| C29 |
H29 |
1.104 |
1.088 |
| C33 |
H33 |
1.103 |
1.088 |
Bond Angles for GVC
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O5 |
C1 |
C35 |
122.2 |
126.2 |
| O5 |
C1 |
OXT |
120.7 |
120.4 |
| C1 |
C35 |
N10 |
122.9 |
121.7 |
| C1 |
C35 |
N9 |
125.6 |
122.6 |
| C35 |
C1 |
OXT |
117.1 |
113.4 |
| N10 |
C35 |
N9 |
111.4 |
115.8 |
| C35 |
N10 |
N8 |
102.7 |
101.3 |
| C35 |
N9 |
C34 |
106.1 |
102.4 |
| N9 |
C34 |
C36 |
128.8 |
126.8 |
| N9 |
C34 |
N8 |
108.9 |
110.0 |
| C36 |
C34 |
N8 |
122.3 |
123.3 |
| C34 |
C36 |
H361 |
105.5 |
111.1 |
| C34 |
C36 |
H362 |
105.4 |
112.0 |
| C34 |
C36 |
H363 |
128.8 |
112.0 |
| N10 |
N8 |
C34 |
110.8 |
110.6 |
| N10 |
N8 |
C30 |
126.0 |
121.5 |
| C34 |
N8 |
C30 |
123.2 |
128.0 |
| N8 |
C30 |
C31 |
119.5 |
120.0 |
| N8 |
C30 |
C29 |
123.6 |
120.0 |
| C30 |
C31 |
C32 |
119.6 |
120.0 |
| C31 |
C30 |
C29 |
116.9 |
120.0 |
| C30 |
C31 |
H31 |
120.4 |
120.0 |
| C31 |
C32 |
C33 |
123.3 |
120.0 |
| C31 |
C32 |
CL5 |
118.1 |
120.0 |
| C32 |
C31 |
H31 |
120.0 |
120.0 |
| C33 |
C32 |
CL5 |
118.4 |
120.0 |
| C32 |
C33 |
C28 |
119.2 |
120.0 |
| C32 |
C33 |
H33 |
120.1 |
120.0 |
| C30 |
C29 |
C28 |
124.0 |
119.9 |
| C30 |
C29 |
H29 |
118.2 |
120.0 |
| C33 |
C28 |
C29 |
117.0 |
120.0 |
| C33 |
C28 |
CL1 |
118.6 |
120.0 |
| C28 |
C33 |
H33 |
120.7 |
120.0 |
| C29 |
C28 |
CL1 |
124.4 |
120.0 |
| C28 |
C29 |
H29 |
117.9 |
120.1 |
| C1 |
OXT |
HOT |
120.7 |
114.0 |
| H361 |
C36 |
H362 |
103.8 |
107.7 |
| H361 |
C36 |
H363 |
105.5 |
107.6 |
| H362 |
C36 |
H363 |
105.4 |
106.0 |
Torsion Angles for GVC
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O5 |
C1 |
C35 |
N10 |
2.1 |
0.1 |
| O5 |
C1 |
C35 |
N9 |
183.4 |
180.0 |
| C35 |
C1 |
O5 |
OXT |
178.8 |
180.0 |
| O5 |
C1 |
OXT |
HOT |
180.0 |
360.0 |
| O5 |
C1 |
C35 |
OXT |
181.1 |
180.0 |
| N10 |
C35 |
C1 |
N9 |
178.7 |
180.1 |
| C1 |
C35 |
N10 |
N8 |
182.2 |
180.0 |
| C1 |
C35 |
N9 |
C34 |
178.4 |
180.0 |
| C35 |
C1 |
OXT |
HOT |
1.1 |
180.0 |
| C1 |
C35 |
N10 |
N9 |
181.2 |
179.9 |
| N10 |
C35 |
C1 |
OXT |
181.0 |
180.0 |
| N10 |
C35 |
N9 |
C34 |
359.6 |
360.0 |
| C35 |
N10 |
N8 |
C34 |
358.6 |
360.0 |
| C35 |
N10 |
N8 |
C30 |
180.0 |
180.0 |
| C1 |
C35 |
N9 |
N10 |
178.8 |
180.1 |
| N9 |
C35 |
C1 |
OXT |
2.3 |
359.9 |
| N9 |
C35 |
N10 |
N8 |
1.0 |
0.1 |
| C35 |
N9 |
C34 |
C36 |
180.8 |
179.9 |
| C35 |
N9 |
C34 |
N8 |
359.5 |
0.0 |
| C36 |
C34 |
N9 |
N8 |
181.3 |
179.9 |
| N9 |
C34 |
C36 |
H361 |
54.7 |
253.6 |
| N9 |
C34 |
C36 |
H362 |
305.3 |
14.1 |
| N9 |
C34 |
C36 |
H363 |
180.0 |
133.1 |
| N10 |
N8 |
C34 |
N9 |
1.2 |
0.0 |
| N9 |
C34 |
N8 |
C30 |
179.9 |
180.0 |
| N9 |
C34 |
C36 |
N8 |
178.5 |
180.1 |
| N10 |
N8 |
C34 |
C36 |
180.0 |
180.1 |
| C36 |
C34 |
N8 |
C30 |
358.6 |
0.1 |
| H361 |
C36 |
C34 |
H362 |
109.4 |
239.5 |
| H361 |
C36 |
C34 |
H363 |
234.7 |
120.5 |
| H362 |
C36 |
C34 |
H363 |
125.3 |
241.0 |
| N8 |
N10 |
C35 |
N9 |
1.0 |
0.1 |
| N9 |
C34 |
N8 |
N10 |
1.2 |
0.0 |
| C36 |
C34 |
N8 |
N10 |
180.0 |
180.1 |
| C34 |
N8 |
N10 |
C30 |
178.6 |
180.0 |
| N10 |
N8 |
C30 |
C31 |
358.6 |
150.0 |
| N10 |
N8 |
C30 |
C29 |
177.3 |
329.9 |
| N9 |
C34 |
N8 |
C36 |
181.2 |
179.9 |
| N8 |
C34 |
C36 |
H361 |
236.2 |
73.5 |
| N8 |
C34 |
C36 |
H362 |
126.8 |
194.0 |
| N8 |
C34 |
C36 |
H363 |
1.5 |
313.0 |
| N10 |
N8 |
C34 |
C30 |
181.3 |
180.0 |
| C34 |
N8 |
C30 |
C31 |
180.1 |
330.0 |
| C34 |
N8 |
C30 |
C29 |
358.8 |
149.9 |
| N10 |
N8 |
C30 |
C34 |
178.5 |
180.0 |
| N8 |
C30 |
C31 |
C32 |
180.3 |
179.9 |
| C31 |
C30 |
N8 |
C29 |
181.3 |
180.1 |
| N8 |
C30 |
C31 |
H31 |
0.3 |
359.9 |
| N8 |
C30 |
C29 |
C28 |
180.1 |
180.1 |
| N8 |
C30 |
C29 |
H29 |
0.1 |
0.1 |
| N8 |
C30 |
C31 |
C29 |
178.8 |
179.9 |
| C30 |
C31 |
C32 |
C33 |
358.3 |
0.0 |
| C30 |
C31 |
C32 |
CL5 |
182.2 |
180.0 |
| C32 |
C31 |
C30 |
H31 |
180.0 |
180.0 |
| C31 |
C30 |
C29 |
C28 |
358.9 |
360.0 |
| C31 |
C30 |
C29 |
H29 |
178.9 |
180.0 |
| C32 |
C31 |
C30 |
C29 |
1.5 |
0.0 |
| C30 |
C31 |
C32 |
H31 |
180.0 |
180.0 |
| C33 |
C32 |
C31 |
CL5 |
176.2 |
180.0 |
| C31 |
C32 |
C33 |
C28 |
1.2 |
360.0 |
| C31 |
C32 |
C33 |
H33 |
181.2 |
180.0 |
| C31 |
C32 |
C33 |
CL5 |
183.8 |
180.0 |
| C33 |
C32 |
C31 |
H31 |
178.3 |
180.0 |
| C32 |
C33 |
C28 |
C29 |
359.3 |
0.0 |
| C32 |
C33 |
C28 |
CL1 |
179.8 |
180.0 |
| C28 |
C33 |
C32 |
H33 |
180.0 |
180.0 |
| C31 |
C32 |
CL5 |
C33 |
176.4 |
180.0 |
| CL5 |
C32 |
C31 |
H31 |
2.1 |
360.0 |
| CL5 |
C32 |
C33 |
C28 |
177.4 |
180.0 |
| CL5 |
C32 |
C33 |
H33 |
357.4 |
360.0 |
| N8 |
C30 |
C29 |
C31 |
181.3 |
180.1 |
| C29 |
C30 |
C31 |
C32 |
1.5 |
0.0 |
| C29 |
C30 |
C31 |
H31 |
181.6 |
180.0 |
| C33 |
C28 |
C29 |
C30 |
0.7 |
360.0 |
| C30 |
C29 |
C28 |
CL1 |
180.2 |
180.1 |
| C28 |
C29 |
C30 |
H29 |
180.0 |
180.0 |
| C28 |
C33 |
C32 |
CL5 |
177.4 |
180.0 |
| C32 |
C33 |
C28 |
H33 |
180.0 |
180.0 |
| C30 |
C29 |
C28 |
C33 |
0.7 |
360.0 |
| C29 |
C28 |
C33 |
CL1 |
179.5 |
180.1 |
| C33 |
C28 |
C29 |
H29 |
180.7 |
180.0 |
| C30 |
C29 |
C28 |
H29 |
180.0 |
180.0 |
| C33 |
C28 |
C29 |
CL1 |
180.5 |
179.9 |
| C29 |
C28 |
C33 |
H33 |
179.3 |
180.0 |
| C33 |
C28 |
CL1 |
C29 |
179.4 |
180.1 |
| CL1 |
C28 |
C33 |
H33 |
359.8 |
359.9 |
| CL1 |
C28 |
C29 |
H29 |
0.2 |
0.0 |
| O5 |
C1 |
OXT |
C35 |
178.9 |
180.0 |
| OXT |
C1 |
C35 |
N10 |
181.0 |
180.0 |
| OXT |
C1 |
C35 |
N9 |
2.3 |
359.9 |
| H361 |
C36 |
C34 |
N8 |
236.2 |
73.5 |
| C34 |
C36 |
H361 |
H362 |
249.4 |
123.1 |
| C34 |
C36 |
H361 |
H363 |
138.7 |
237.0 |
| H362 |
C36 |
H361 |
H363 |
249.4 |
113.9 |
| H362 |
C36 |
C34 |
N8 |
126.8 |
194.0 |
| C34 |
C36 |
H362 |
H361 |
110.6 |
237.5 |
| C34 |
C36 |
H362 |
H363 |
221.3 |
122.5 |
| H361 |
C36 |
H362 |
H363 |
110.6 |
245.0 |
| H363 |
C36 |
C34 |
N8 |
1.5 |
313.0 |
| C34 |
C36 |
H363 |
H361 |
234.7 |
122.5 |
| C34 |
C36 |
H363 |
H362 |
125.3 |
237.5 |
| H361 |
C36 |
H363 |
H362 |
250.6 |
115.0 |
| C30 |
C31 |
H31 |
C32 |
180.0 |
180.0 |
| H31 |
C31 |
C30 |
C29 |
181.6 |
180.0 |
| H31 |
C31 |
C32 |
C33 |
178.3 |
180.0 |
| H31 |
C31 |
C32 |
CL5 |
2.1 |
360.0 |
| C30 |
C29 |
H29 |
C28 |
180.0 |
180.0 |
| H29 |
C29 |
C28 |
CL1 |
0.2 |
0.0 |
| H33 |
C33 |
C32 |
CL5 |
357.4 |
360.0 |
| C32 |
C33 |
H33 |
C28 |
180.0 |
180.0 |
| H33 |
C33 |
C28 |
C29 |
179.3 |
180.0 |
| H33 |
C33 |
C28 |
CL1 |
359.8 |
359.9 |