PDB Chemical Component GUO
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for GUO
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O2P |
P1 |
1.538 |
1.480 |
| O3P |
P1 |
1.534 |
1.610 |
| P1 |
O5P |
1.604 |
1.611 |
| P1 |
O4P |
1.537 |
1.610 |
| O5P |
C6 |
1.427 |
1.429 |
| C6 |
C9 |
1.530 |
1.530 |
| C6 |
H6 |
1.100 |
1.090 |
| C6 |
H6A |
1.100 |
1.090 |
| C12 |
C9 |
1.514 |
1.541 |
| O11 |
C9 |
1.446 |
1.437 |
| C9 |
H9 |
1.100 |
1.090 |
| C20 |
O11 |
1.440 |
1.444 |
| C16 |
C12 |
1.500 |
1.548 |
| C12 |
O14 |
1.433 |
1.429 |
| C12 |
H12 |
1.100 |
1.090 |
| O14 |
HO14 |
0.950 |
0.968 |
| O18 |
C16 |
1.433 |
1.429 |
| C16 |
C20 |
1.513 |
1.555 |
| C16 |
H16 |
1.100 |
1.089 |
| O18 |
HO18 |
0.950 |
0.967 |
| N22 |
C20 |
1.428 |
1.465 |
| C20 |
H20 |
1.101 |
1.089 |
| N22 |
C24 |
1.336 |
1.364 |
| N22 |
HN22 |
1.000 |
0.969 |
| C24 |
N26 |
1.277 |
1.306 |
| C24 |
H24 |
1.080 |
1.080 |
| N26 |
C27 |
1.370 |
1.358 |
| C28 |
C27 |
1.332 |
1.394 |
| C27 |
N37 |
1.329 |
1.369 |
| C29 |
C28 |
1.470 |
1.466 |
| C28 |
N34 |
1.384 |
1.358 |
| N31 |
C29 |
1.328 |
1.348 |
| C29 |
O30 |
1.205 |
1.217 |
| N31 |
HN31 |
1.000 |
0.970 |
| N31 |
HN3A |
1.000 |
0.969 |
| N34 |
C35 |
1.325 |
1.300 |
| C35 |
N37 |
1.328 |
1.363 |
| C35 |
H35 |
1.080 |
1.080 |
| N37 |
C38 |
1.469 |
1.465 |
| O40 |
C38 |
1.429 |
1.444 |
| C38 |
C41 |
1.505 |
1.550 |
| C38 |
H38 |
1.100 |
1.090 |
| O3P |
HO3P |
0.950 |
0.967 |
| O40 |
C49 |
1.447 |
1.438 |
| C45 |
C41 |
1.501 |
1.548 |
| C41 |
O43 |
1.434 |
1.428 |
| C41 |
H41 |
1.100 |
1.090 |
| O43 |
HO43 |
0.950 |
0.967 |
| C49 |
C45 |
1.528 |
1.541 |
| C45 |
O47 |
1.431 |
1.429 |
| C45 |
H45 |
1.100 |
1.090 |
| O47 |
HO47 |
0.950 |
0.967 |
| C51 |
C49 |
1.531 |
1.530 |
| C49 |
H49 |
1.100 |
1.090 |
| O4P |
HO4P |
0.950 |
0.968 |
| C51 |
O54 |
1.431 |
1.429 |
| C51 |
H51 |
1.100 |
1.090 |
| C51 |
H51A |
1.100 |
1.090 |
| P55 |
O54 |
1.605 |
1.609 |
| O56 |
P55 |
1.536 |
1.480 |
| O58 |
P55 |
1.534 |
1.611 |
| P55 |
O57 |
1.534 |
1.610 |
| O57 |
HO57 |
0.950 |
0.967 |
| O58 |
HO58 |
0.950 |
0.966 |
Bond Angles for GUO
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2P |
P1 |
O5P |
110.5 |
109.4 |
| O2P |
P1 |
O4P |
108.0 |
109.5 |
| O3P |
P1 |
O5P |
111.7 |
109.4 |
| O3P |
P1 |
O4P |
108.1 |
109.5 |
| O4P |
P1 |
O5P |
110.2 |
109.5 |
| P1 |
O5P |
C6 |
119.8 |
123.0 |
| P1 |
O4P |
HO4P |
109.5 |
114.0 |
| O5P |
C6 |
H6 |
109.4 |
109.5 |
| O5P |
C6 |
H6A |
109.4 |
109.5 |
| C9 |
C6 |
H6 |
109.4 |
109.5 |
| C9 |
C6 |
H6A |
109.4 |
109.4 |
| C6 |
C9 |
H9 |
110.2 |
109.8 |
| H6 |
C6 |
H6A |
109.5 |
109.5 |
| C12 |
C9 |
H9 |
110.5 |
109.9 |
| O11 |
C9 |
H9 |
111.5 |
109.9 |
| C16 |
C12 |
H12 |
111.6 |
110.6 |
| O14 |
C12 |
H12 |
112.7 |
110.5 |
| C12 |
O14 |
HO14 |
109.5 |
114.0 |
| O18 |
C16 |
C20 |
110.8 |
110.9 |
| O18 |
C16 |
H16 |
112.7 |
110.9 |
| C20 |
C16 |
H16 |
111.4 |
110.9 |
| C16 |
C20 |
H20 |
108.5 |
110.6 |
| N22 |
C20 |
H20 |
109.6 |
110.7 |
| C24 |
N22 |
HN22 |
119.6 |
120.0 |
| N22 |
C24 |
N26 |
120.9 |
120.0 |
| N22 |
C24 |
H24 |
119.5 |
119.9 |
| N26 |
C24 |
H24 |
119.6 |
120.1 |
| C24 |
N26 |
C27 |
121.2 |
120.0 |
| N26 |
C27 |
N37 |
120.0 |
126.9 |
| C28 |
C27 |
N37 |
107.5 |
106.2 |
| C27 |
N37 |
C35 |
108.3 |
107.6 |
| C27 |
N37 |
C38 |
125.2 |
126.2 |
| C29 |
C28 |
N34 |
123.2 |
126.4 |
| C28 |
N34 |
C35 |
104.7 |
109.4 |
| HN31 |
N31 |
HN3A |
120.0 |
120.0 |
| N34 |
C35 |
N37 |
110.6 |
109.6 |
| N34 |
C35 |
H35 |
124.7 |
125.2 |
| N37 |
C35 |
H35 |
124.7 |
125.2 |
| C35 |
N37 |
C38 |
126.5 |
126.2 |
| N37 |
C38 |
C41 |
109.7 |
110.6 |
| N37 |
C38 |
H38 |
110.1 |
110.5 |
| O40 |
C38 |
C41 |
106.5 |
103.5 |
| O40 |
C38 |
H38 |
110.7 |
110.7 |
| C41 |
C38 |
H38 |
109.7 |
110.6 |
| C38 |
C41 |
O43 |
110.3 |
110.9 |
| C38 |
C41 |
H41 |
110.8 |
110.9 |
| O40 |
C49 |
C45 |
107.4 |
107.3 |
| O40 |
C49 |
H49 |
110.9 |
109.9 |
| C45 |
C41 |
H41 |
110.9 |
111.0 |
| O43 |
C41 |
H41 |
111.9 |
110.8 |
| C41 |
O43 |
HO43 |
109.5 |
114.0 |
| C49 |
C45 |
H45 |
110.3 |
110.6 |
| O47 |
C45 |
H45 |
111.8 |
110.4 |
| C45 |
O47 |
HO47 |
109.5 |
114.0 |
| C51 |
C49 |
H49 |
109.7 |
110.0 |
| O54 |
C51 |
H51 |
109.3 |
109.4 |
| O54 |
C51 |
H51A |
109.3 |
109.5 |
| H51 |
C51 |
H51A |
109.5 |
109.5 |
| O56 |
P55 |
O57 |
107.8 |
109.5 |
| P55 |
O57 |
HO57 |
109.5 |
114.0 |
Torsion Angles for GUO
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O3P |
P1 |
O2P |
O5P |
122.6 |
120.0 |
| O3P |
P1 |
O2P |
O4P |
243.1 |
240.0 |
| O4P |
P1 |
O2P |
O5P |
239.5 |
240.0 |
| O2P |
P1 |
O5P |
C6 |
302.9 |
305.0 |
| O2P |
P1 |
O4P |
HO4P |
360.0 |
180.0 |
| O2P |
P1 |
O3P |
O5P |
238.1 |
240.0 |
| O2P |
P1 |
O3P |
O4P |
116.8 |
120.0 |
| O4P |
P1 |
O3P |
O5P |
121.3 |
120.0 |
| O3P |
P1 |
O5P |
C6 |
182.2 |
185.0 |
| O3P |
P1 |
O4P |
HO4P |
117.0 |
300.0 |
| O2P |
P1 |
O5P |
O4P |
240.8 |
240.0 |
| O3P |
P1 |
O5P |
O4P |
120.1 |
120.0 |
| O5P |
P1 |
O4P |
HO4P |
239.3 |
60.0 |
| P1 |
O5P |
C6 |
H6 |
292.8 |
60.0 |
| P1 |
O5P |
C6 |
H6A |
52.8 |
300.0 |
| O2P |
P1 |
O4P |
O5P |
120.7 |
120.0 |
| O3P |
P1 |
O4P |
O5P |
237.8 |
240.0 |
| O4P |
P1 |
O5P |
C6 |
62.1 |
65.0 |
| C9 |
C6 |
O5P |
H6 |
240.0 |
120.1 |
| C9 |
C6 |
O5P |
H6A |
120.0 |
240.1 |
| O5P |
C6 |
C9 |
H9 |
73.5 |
305.7 |
| H6 |
C6 |
O5P |
H6A |
240.0 |
120.0 |
| P1 |
O5P |
C6 |
C9 |
172.8 |
180.0 |
| O5P |
C6 |
C9 |
H6 |
120.0 |
240.0 |
| O5P |
C6 |
C9 |
H6A |
240.0 |
120.0 |
| H6 |
C6 |
C9 |
H6A |
120.0 |
240.0 |
| C12 |
C9 |
C6 |
H9 |
238.1 |
239.0 |
| O11 |
C9 |
C6 |
H9 |
123.0 |
121.0 |
| O5P |
C6 |
H6 |
H6A |
119.9 |
240.0 |
| C9 |
C6 |
H6 |
H6A |
240.1 |
120.0 |
| H6 |
C6 |
C9 |
H9 |
313.5 |
65.7 |
| O5P |
C6 |
H6A |
H6 |
240.1 |
120.0 |
| C9 |
C6 |
H6A |
H6 |
119.9 |
240.0 |
| H6A |
C6 |
C9 |
H9 |
193.5 |
185.7 |
| C12 |
C9 |
C6 |
H6 |
191.6 |
304.7 |
| C12 |
C9 |
C6 |
H6A |
71.6 |
64.7 |
| C6 |
C9 |
C12 |
H9 |
121.8 |
121.0 |
| O11 |
C9 |
C12 |
H9 |
239.6 |
240.5 |
| O11 |
C9 |
C6 |
H6 |
76.5 |
186.7 |
| O11 |
C9 |
C6 |
H6A |
316.5 |
306.7 |
| C6 |
C9 |
O11 |
H9 |
237.7 |
239.1 |
| C12 |
C9 |
O11 |
H9 |
119.8 |
119.5 |
| H9 |
C9 |
C6 |
H6 |
313.5 |
65.7 |
| H9 |
C9 |
C6 |
H6A |
193.5 |
185.7 |
| C20 |
O11 |
C9 |
H9 |
225.6 |
266.9 |
| C16 |
C12 |
C9 |
H9 |
159.3 |
117.6 |
| O14 |
C12 |
C16 |
H12 |
234.1 |
237.4 |
| C16 |
C12 |
O14 |
HO14 |
70.4 |
65.3 |
| O14 |
C12 |
C9 |
H9 |
43.4 |
358.9 |
| C16 |
C12 |
O14 |
H12 |
125.3 |
122.7 |
| H12 |
C12 |
C9 |
H9 |
277.6 |
236.3 |
| H12 |
C12 |
O14 |
HO14 |
305.1 |
302.6 |
| HO14 |
O14 |
C12 |
H12 |
305.1 |
302.6 |
| O18 |
C16 |
C12 |
H12 |
79.7 |
102.2 |
| C20 |
C16 |
O18 |
H16 |
125.6 |
123.7 |
| O18 |
C16 |
C20 |
H20 |
37.6 |
36.7 |
| C20 |
C16 |
C12 |
H12 |
195.9 |
220.4 |
| O18 |
C16 |
C20 |
H16 |
233.7 |
236.4 |
| N22 |
C20 |
C16 |
H20 |
239.0 |
237.0 |
| H16 |
C16 |
C12 |
H12 |
313.2 |
338.6 |
| O18 |
C16 |
H16 |
C20 |
125.3 |
123.7 |
| H16 |
C16 |
C20 |
H20 |
163.9 |
160.3 |
| HO18 |
O18 |
C16 |
C20 |
71.6 |
67.3 |
| HO18 |
O18 |
C16 |
H16 |
306.0 |
303.7 |
| N22 |
C20 |
C16 |
H16 |
42.9 |
37.3 |
| C16 |
C20 |
N22 |
H20 |
120.3 |
122.9 |
| H20 |
C20 |
C16 |
H16 |
163.9 |
160.3 |
| C24 |
N22 |
C20 |
H20 |
29.0 |
22.1 |
| N26 |
C24 |
N22 |
H24 |
180.0 |
180.0 |
| N22 |
C24 |
N26 |
C27 |
182.4 |
180.0 |
| HN22 |
N22 |
C20 |
H20 |
209.0 |
202.0 |
| HN22 |
N22 |
C24 |
N26 |
184.7 |
180.0 |
| HN22 |
N22 |
C24 |
H24 |
4.7 |
0.0 |
| N26 |
C24 |
N22 |
HN22 |
184.7 |
180.0 |
| N22 |
C24 |
N26 |
H24 |
180.0 |
180.0 |
| C24 |
N26 |
C27 |
N37 |
143.5 |
90.0 |
| H24 |
C24 |
N22 |
HN22 |
4.7 |
0.0 |
| N22 |
C24 |
H24 |
N26 |
180.0 |
180.0 |
| H24 |
C24 |
N26 |
C27 |
2.4 |
0.0 |
| C27 |
N26 |
C24 |
H24 |
2.4 |
0.0 |
| C28 |
C27 |
N26 |
N37 |
181.1 |
180.4 |
| N26 |
C27 |
N37 |
C35 |
180.4 |
179.9 |
| N26 |
C27 |
N37 |
C38 |
1.1 |
0.1 |
| N26 |
C27 |
C28 |
N37 |
179.0 |
179.7 |
| C28 |
C27 |
N37 |
C35 |
359.5 |
359.6 |
| C28 |
C27 |
N37 |
C38 |
180.2 |
179.8 |
| N34 |
C35 |
N37 |
C27 |
0.3 |
0.5 |
| C27 |
N37 |
C35 |
H35 |
180.3 |
180.1 |
| C35 |
N37 |
C27 |
C38 |
179.3 |
179.8 |
| C27 |
N37 |
C38 |
C41 |
111.9 |
84.9 |
| C27 |
N37 |
C38 |
H38 |
351.1 |
322.0 |
| C29 |
C28 |
C27 |
N37 |
179.9 |
180.3 |
| C29 |
C28 |
N34 |
C35 |
180.3 |
180.0 |
| N34 |
C28 |
C27 |
N37 |
0.4 |
0.3 |
| C28 |
N34 |
C35 |
N37 |
360.0 |
359.7 |
| C28 |
N34 |
C35 |
H35 |
179.9 |
180.0 |
| N31 |
C29 |
C28 |
N34 |
351.9 |
0.0 |
| O30 |
C29 |
C28 |
N34 |
169.4 |
180.0 |
| C27 |
N37 |
C35 |
N34 |
0.3 |
0.5 |
| N37 |
C35 |
N34 |
H35 |
180.0 |
179.7 |
| N34 |
C35 |
N37 |
C38 |
179.6 |
180.2 |
| C27 |
N37 |
C35 |
C38 |
180.7 |
180.2 |
| N34 |
C35 |
N37 |
H35 |
180.0 |
180.3 |
| C35 |
N37 |
C38 |
C41 |
292.7 |
265.2 |
| C35 |
N37 |
C38 |
H38 |
171.9 |
142.3 |
| N34 |
C35 |
H35 |
N37 |
180.0 |
179.6 |
| H35 |
C35 |
N37 |
C38 |
359.6 |
359.9 |
| C27 |
N37 |
C38 |
C35 |
179.2 |
179.7 |
| C38 |
N37 |
C35 |
H35 |
359.6 |
359.9 |
| O40 |
C38 |
N37 |
C41 |
116.9 |
114.1 |
| O40 |
C38 |
N37 |
H38 |
237.6 |
237.0 |
| C41 |
C38 |
N37 |
H38 |
120.8 |
122.9 |
| N37 |
C38 |
C41 |
O43 |
273.0 |
273.7 |
| N37 |
C38 |
C41 |
H41 |
37.6 |
37.3 |
| N37 |
C38 |
O40 |
C41 |
241.2 |
241.5 |
| N37 |
C38 |
O40 |
H38 |
122.0 |
122.9 |
| C41 |
C38 |
O40 |
H38 |
240.9 |
241.4 |
| O40 |
C38 |
C41 |
O43 |
153.9 |
155.2 |
| O40 |
C38 |
C41 |
H41 |
278.4 |
278.8 |
| N37 |
C38 |
C41 |
H38 |
238.9 |
237.1 |
| O40 |
C38 |
C41 |
H38 |
119.8 |
118.6 |
| C45 |
C41 |
C38 |
H41 |
118.2 |
118.2 |
| O43 |
C41 |
C38 |
H41 |
235.5 |
236.4 |
| C38 |
C41 |
O43 |
HO43 |
180.0 |
180.0 |
| N37 |
C38 |
H38 |
C41 |
120.8 |
122.9 |
| O40 |
C38 |
H38 |
C41 |
242.8 |
245.9 |
| H38 |
C38 |
C41 |
O43 |
34.1 |
36.6 |
| H38 |
C38 |
C41 |
H41 |
158.6 |
160.2 |
| HO3P |
O3P |
P1 |
O5P |
121.9 |
180.0 |
| HO3P |
O3P |
P1 |
O4P |
243.2 |
300.0 |
| C49 |
O40 |
C38 |
C41 |
331.1 |
319.9 |
| C49 |
O40 |
C38 |
H38 |
90.3 |
78.5 |
| O40 |
C49 |
C45 |
H45 |
132.2 |
116.7 |
| C51 |
C49 |
O40 |
H49 |
239.0 |
238.8 |
| C45 |
C41 |
C38 |
H38 |
276.8 |
278.4 |
| C38 |
C41 |
C45 |
H41 |
241.9 |
241.8 |
| O40 |
C49 |
C45 |
C41 |
13.5 |
358.0 |
| O43 |
C41 |
C45 |
H41 |
124.6 |
123.7 |
| C45 |
C41 |
O43 |
HO43 |
292.0 |
292.7 |
| O43 |
C41 |
C38 |
H38 |
34.1 |
36.6 |
| C38 |
C41 |
O43 |
H41 |
123.9 |
123.6 |
| C45 |
C41 |
O43 |
H41 |
235.9 |
236.3 |
| H41 |
C41 |
C38 |
H38 |
158.6 |
160.2 |
| C38 |
C41 |
H41 |
O43 |
236.4 |
236.4 |
| H41 |
C41 |
O43 |
HO43 |
56.0 |
56.4 |
| HO43 |
O43 |
C41 |
H41 |
56.0 |
56.4 |
| O40 |
C49 |
C45 |
H49 |
239.4 |
240.6 |
| C49 |
C45 |
C41 |
H41 |
88.6 |
97.3 |
| O47 |
C45 |
C49 |
H45 |
123.9 |
122.6 |
| C49 |
C45 |
O47 |
HO47 |
293.9 |
176.3 |
| O40 |
C49 |
C45 |
O47 |
256.1 |
239.3 |
| O47 |
C45 |
C41 |
H41 |
206.4 |
216.0 |
| C49 |
C45 |
O47 |
H45 |
237.0 |
237.4 |
| H45 |
C45 |
C41 |
H41 |
330.1 |
338.5 |
| H45 |
C45 |
O47 |
HO47 |
56.9 |
299.0 |
| HO47 |
O47 |
C45 |
H45 |
56.9 |
299.0 |
| O40 |
C49 |
C51 |
H49 |
121.7 |
121.1 |
| C51 |
C49 |
C45 |
H45 |
13.5 |
357.3 |
| O40 |
C49 |
H49 |
C45 |
118.5 |
117.8 |
| H49 |
C49 |
C45 |
H45 |
252.8 |
236.1 |
| HO4P |
O4P |
P1 |
O5P |
239.3 |
60.0 |
| O54 |
C51 |
C49 |
H49 |
175.9 |
305.3 |
| H51 |
C51 |
O54 |
H51A |
119.8 |
120.0 |
| H51 |
C51 |
C49 |
H49 |
296.0 |
65.3 |
| O54 |
C51 |
H51 |
H51A |
240.4 |
240.0 |
| H51A |
C51 |
C49 |
H49 |
55.8 |
185.3 |
| O54 |
C51 |
H51A |
H51 |
119.7 |
120.0 |
| P55 |
O54 |
C51 |
H51 |
39.5 |
60.0 |
| P55 |
O54 |
C51 |
H51A |
279.7 |
300.0 |
| O56 |
P55 |
O57 |
HO57 |
0.0 |
180.0 |
| O58 |
P55 |
O57 |
HO57 |
243.8 |
300.0 |