PDB Chemical Component GU4

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GU4

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O1	C1	1.435	1.429
O1	HO1	0.950	0.967
C1	O5	1.437	1.429
C1	C2	1.532	1.531
C1	H1	1.100	1.090
O5	C5	1.438	1.429
C5	C6	1.531	1.530
C5	C4	1.534	1.532
C5	H5	1.100	1.090
C6	O6	1.431	1.428
C6	H61	1.100	1.091
C6	H62	1.100	1.090
O6	S6	1.431	1.522
S6	O22	1.501	1.421
S6	O23	1.501	1.420
S6	O21	1.500	1.522
C4	O4	1.432	1.429
C4	C3	1.531	1.531
C4	H4	1.100	1.090
O4	S4	1.433	1.522
S4	O25	1.500	1.421
S4	O26	1.500	1.421
S4	O24	1.500	1.522
C3	O3	1.432	1.429
C3	C2	1.532	1.532
C3	H3	1.100	1.090
O3	S3	1.434	1.522
S3	O28	1.499	1.421
S3	O29	1.500	1.522
S3	O27	1.500	1.421
C2	O2	1.431	1.429
C2	H2	1.100	1.090
O2	S2	1.431	1.521
S2	O11	1.501	1.422
S2	O12	1.500	1.421
S2	O10	1.500	1.522
O21	HO21	0.950	0.967
O24	HO24	0.950	0.967
O29	HO29	0.950	0.967
O10	HO10	0.950	0.966

Bond Angles for GU4

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C1	O1	HO1	109.5	114.0
O1	C1	O5	111.3	109.5
O1	C1	C2	109.5	109.5
O1	C1	H1	109.4	109.5
O5	C1	C2	108.9	109.4
O5	C1	H1	109.4	109.4
C1	O5	C5	114.4	114.0
C2	C1	H1	108.2	109.5
C1	C2	C3	110.5	109.1
C1	C2	O2	110.6	109.5
C1	C2	H2	108.3	109.6
O5	C5	C6	106.1	109.5
O5	C5	C4	112.6	109.4
O5	C5	H5	110.5	109.6
C6	C5	C4	109.2	109.5
C6	C5	H5	109.2	109.4
C5	C6	O6	110.7	109.5
C5	C6	H61	109.2	109.4
C5	C6	H62	109.2	109.4
C4	C5	H5	109.2	109.5
C5	C4	O4	108.5	109.5
C5	C4	C3	110.5	109.1
C5	C4	H4	109.4	109.5
O6	C6	H61	109.2	109.5
O6	C6	H62	109.2	109.5
C6	O6	S6	121.9	114.0
H61	C6	H62	109.5	109.5
O6	S6	O22	109.1	106.4
O6	S6	O23	110.2	106.4
O6	S6	O21	109.4	107.2
O22	S6	O23	109.2	123.2
O22	S6	O21	109.4	106.4
O23	S6	O21	109.5	106.4
S6	O21	HO21	109.5	114.0
O4	C4	C3	108.2	109.6
O4	C4	H4	110.8	109.6
C4	O4	S4	113.7	114.0
C3	C4	H4	109.5	109.6
C4	C3	O3	109.8	109.5
C4	C3	C2	110.3	109.1
C4	C3	H3	108.6	109.5
O4	S4	O25	110.0	106.4
O4	S4	O26	108.8	106.4
O4	S4	O24	110.4	107.2
O25	S4	O26	109.4	123.1
O25	S4	O24	109.2	106.4
O26	S4	O24	109.1	106.4
S4	O24	HO24	109.5	114.0
O3	C3	C2	109.6	109.5
O3	C3	H3	110.0	109.5
C3	O3	S3	113.8	114.0
C2	C3	H3	108.6	109.6
C3	C2	O2	109.4	109.5
C3	C2	H2	108.3	109.5
O3	S3	O28	108.9	106.4
O3	S3	O29	110.2	107.2
O3	S3	O27	110.5	106.4
O28	S3	O29	109.2	106.4
O28	S3	O27	108.9	123.1
O29	S3	O27	109.1	106.4
S3	O29	HO29	109.5	114.0
O2	C2	H2	109.7	109.6
C2	O2	S2	112.3	114.0
O2	S2	O11	110.3	106.4
O2	S2	O12	109.7	106.4
O2	S2	O10	109.2	107.2
O11	S2	O12	109.5	123.1
O11	S2	O10	109.3	106.4
O12	S2	O10	108.9	106.4
S2	O10	HO10	109.5	114.0

Torsion Angles for GU4

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O5	C1	O1	C2	239.5	240.0
O5	C1	O1	H1	121.1	120.0
O1	C1	O5	C5	61.3	58.8
C2	C1	O1	H1	241.6	240.0
O1	C1	C2	C3	296.6	297.6
O1	C1	C2	O2	57.9	57.5
O1	C1	C2	H2	178.1	177.7
HO1	O1	C1	O5	180.0	60.0
HO1	O1	C1	C2	300.5	180.0
HO1	O1	C1	H1	59.0	300.0
O5	C1	O1	HO1	180.0	60.0
O1	C1	O5	C2	120.9	120.1
O1	C1	O5	H1	238.9	240.0
C2	C1	O5	H1	118.1	119.9
O5	C1	C2	C3	58.6	57.7
O5	C1	C2	O2	179.9	177.6
O5	C1	C2	H2	300.0	297.8
C1	O5	C5	C6	176.0	181.2
C1	O5	C5	C4	56.6	61.2
C1	O5	C5	H5	294.3	301.2
C2	C1	O1	HO1	300.5	180.0
O1	C1	C2	O5	238.0	240.0
O1	C1	C2	H1	119.2	120.0
O5	C1	C2	H1	241.2	240.1
C2	C1	O5	C5	300.4	298.8
C4	C3	C2	C1	304.2	303.0
O3	C3	C2	C1	183.2	183.1
C1	C2	C3	H3	63.1	62.9
C3	C2	C1	O2	238.7	240.1
C3	C2	C1	H2	118.5	119.9
O2	C2	C1	H2	239.8	239.8
C1	C2	O2	S2	94.7	95.0
H1	C1	O1	HO1	59.0	300.0
O1	C1	H1	O5	122.2	120.0
O1	C1	H1	C2	240.7	239.9
O5	C1	H1	C2	118.5	119.9
H1	C1	O5	C5	182.4	178.8
H1	C1	C2	C3	177.4	177.6
H1	C1	C2	O2	298.7	297.5
H1	C1	C2	H2	58.9	57.7
C5	O5	C1	C2	300.4	298.8
C5	O5	C1	H1	182.4	178.8
C6	C5	O5	C4	119.4	119.9
C6	C5	O5	H5	241.7	240.0
O5	C5	C6	O6	303.3	64.6
O5	C5	C6	H61	63.5	184.6
O5	C5	C6	H62	183.1	304.6
C4	C5	O5	H5	122.4	120.0
O5	C5	C4	O4	190.7	182.5
O5	C5	C4	C3	309.2	302.3
O5	C5	C4	H4	69.7	62.3
O5	C5	C6	C4	238.4	240.1
O5	C5	C6	H5	119.1	120.1
C4	C5	C6	H5	240.7	240.0
C6	C5	C4	O4	73.2	62.5
C6	C5	C4	C3	191.6	182.4
C6	C5	C4	H4	312.2	302.4
O6	C6	C5	H61	239.8	240.0
O6	C6	C5	H62	120.2	120.1
C5	C6	O6	S6	176.0	180.0
H61	C6	C5	H62	240.4	240.0
O5	C5	C4	C6	117.5	119.9
O5	C5	C4	H5	236.9	239.9
C6	C5	C4	H5	119.3	120.0
C4	C5	C6	O6	64.9	184.5
C4	C5	C6	H61	185.1	304.5
C4	C5	C6	H62	304.7	64.5
O4	C4	C5	C3	241.6	240.1
O4	C4	C5	H4	121.0	120.1
C5	C4	O4	S4	240.0	225.7
C3	C4	C5	H4	239.4	240.0
C5	C4	C3	O3	171.9	176.9
C5	C4	C3	C2	51.0	57.0
C5	C4	C3	H3	292.2	297.0
O5	C5	H5	C6	243.7	240.0
O5	C5	H5	C4	124.3	120.0
C6	C5	H5	C4	240.7	240.0
H5	C5	C6	O6	184.2	304.6
H5	C5	C6	H61	304.4	64.5
H5	C5	C6	H62	64.0	184.5
H5	C5	C4	O4	313.8	302.5
H5	C5	C4	C3	72.3	62.4
H5	C5	C4	H4	192.8	182.4
O6	C6	C5	C4	64.9	184.5
O6	C6	C5	H5	184.2	304.6
C5	C6	O6	H61	120.2	120.0
C5	C6	O6	H62	239.8	240.0
H61	C6	O6	H62	119.6	120.0
C6	O6	S6	O22	153.3	188.5
C6	O6	S6	O23	33.4	321.5
C6	O6	S6	O21	273.0	75.0
H61	C6	C5	C4	185.1	304.5
H61	C6	C5	H5	304.4	64.5
C5	C6	H61	O6	238.9	240.0
C5	C6	H61	H62	119.4	119.9
O6	C6	H61	H62	240.5	239.9
H61	C6	O6	S6	55.8	60.0
H62	C6	C5	C4	304.7	64.5
H62	C6	C5	H5	64.0	184.5
C5	C6	H62	O6	121.1	120.0
C5	C6	H62	H61	240.5	240.1
O6	C6	H62	H61	119.4	120.0
H62	C6	O6	S6	296.1	300.0
S6	O6	C6	H61	55.8	60.0
S6	O6	C6	H62	296.1	300.0
O22	S6	O6	O23	119.9	227.0
O22	S6	O6	O21	240.3	113.5
O23	S6	O6	O21	120.4	246.5
O6	S6	O21	HO21	240.5	180.0
O6	S6	O22	O23	239.5	123.0
O6	S6	O22	O21	119.6	245.9
O23	S6	O22	O21	240.1	122.9
O22	S6	O21	HO21	0.0	66.5
O6	S6	O23	O22	119.8	237.0
O6	S6	O23	O21	239.7	114.1
O22	S6	O23	O21	119.8	237.1
O23	S6	O21	HO21	119.7	293.6
O6	S6	O21	O22	240.5	113.6
O6	S6	O21	O23	120.8	246.4
O22	S6	O21	O23	240.3	132.9
O4	C4	C5	H5	313.8	302.5
C5	C4	O4	C3	119.9	119.6
C5	C4	O4	H4	239.9	239.9
C3	C4	O4	H4	120.0	120.3
O4	C4	C3	O3	290.5	296.7
O4	C4	C3	C2	169.6	176.8
O4	C4	C3	H3	50.8	56.9
C4	O4	S4	O25	297.5	187.8
C4	O4	S4	O26	177.7	320.7
C4	O4	S4	O24	58.0	74.2
C1	C2	C3	C4	304.2	303.0
C3	C4	C5	H5	72.3	62.4
C5	C4	C3	O4	241.4	240.2
C5	C4	C3	H4	120.5	119.9
O4	C4	C3	H4	239.1	239.7
C3	C4	O4	S4	120.1	106.1
O3	C3	C4	C2	120.8	119.9
O3	C3	C4	H3	239.7	239.9
C4	C3	O3	S3	118.5	145.0
C2	C3	C4	H3	118.9	120.0
C4	C3	C2	O2	182.3	183.1
C4	C3	C2	H2	62.7	62.9
H4	C4	C5	H5	192.8	182.4
C5	C4	H4	O4	119.6	120.1
C5	C4	H4	C3	238.8	240.3
O4	C4	H4	C3	119.2	120.2
H4	C4	O4	S4	0.1	345.8
H4	C4	C3	O3	51.4	57.0
H4	C4	C3	C2	290.5	297.1
H4	C4	C3	H3	171.6	177.1
S4	O4	C4	C3	120.1	106.1
S4	O4	C4	H4	0.1	345.8
O25	S4	O4	O26	119.8	227.1
O25	S4	O4	O24	239.5	113.6
O26	S4	O4	O24	119.7	246.5
O4	S4	O24	HO24	119.5	180.0
O4	S4	O25	O26	240.6	123.0
O4	S4	O25	O24	121.3	245.9
O26	S4	O25	O24	240.7	122.9
O25	S4	O24	HO24	240.5	66.4
O4	S4	O26	O25	120.1	237.0
O4	S4	O26	O24	239.5	114.1
O25	S4	O26	O24	119.3	237.0
O26	S4	O24	HO24	0.0	293.5
O4	S4	O24	O25	239.0	113.6
O4	S4	O24	O26	119.5	246.5
O25	S4	O24	O26	240.5	132.9
C1	C2	C3	O3	183.2	183.1
O3	C3	C4	H4	51.4	57.0
C4	C3	O3	C2	238.8	240.4
C4	C3	O3	H3	119.5	120.2
C2	C3	O3	H3	240.7	239.7
O3	C3	C2	O2	61.3	63.2
O3	C3	C2	H2	301.7	303.0
C3	O3	S3	O28	182.9	321.5
C3	O3	S3	O29	63.2	75.0
C3	O3	S3	O27	302.5	188.5
C3	C2	C1	H1	177.4	177.6
C1	C2	C3	O2	122.0	119.9
C1	C2	C3	H2	241.5	240.1
C2	C3	C4	H4	290.5	297.1
C4	C3	C2	O3	121.0	119.9
C4	C3	C2	H3	241.1	240.1
O3	C3	C2	H3	120.1	120.2
C2	C3	O3	S3	239.7	264.6
O2	C2	C3	H2	119.5	120.2
C3	C2	O2	S2	216.6	214.7
H3	C3	C4	H4	171.6	177.1
C4	C3	H3	O3	239.8	239.8
C4	C3	H3	C2	119.9	119.6
O3	C3	H3	C2	240.1	239.8
H3	C3	O3	S3	359.0	24.8
H3	C3	C2	O2	301.2	303.0
H3	C3	C2	H2	181.6	182.8
S3	O3	C3	C2	239.7	264.6
S3	O3	C3	H3	359.0	24.8
O28	S3	O3	O29	119.8	246.5
O28	S3	O3	O27	240.5	132.9
O29	S3	O3	O27	120.7	246.4
O3	S3	O29	HO29	238.5	180.0
O3	S3	O28	O29	239.6	114.1
O3	S3	O28	O27	120.5	237.0
O29	S3	O28	O27	240.9	122.9
O28	S3	O29	HO29	118.9	293.5
O3	S3	O29	O28	119.6	246.5
O3	S3	O29	O27	238.5	113.6
O28	S3	O29	O27	118.9	227.1
O3	S3	O27	O28	240.5	123.0
O3	S3	O27	O29	121.3	245.9
O28	S3	O27	O29	240.9	122.9
O27	S3	O29	HO29	360.0	66.4
O2	C2	C1	H1	298.7	297.5
C1	C2	O2	C3	238.1	240.3
C1	C2	O2	H2	119.4	120.2
O2	C2	C3	H3	301.2	303.0
C3	C2	O2	H2	241.3	239.9
C2	O2	S2	O11	50.7	188.5
C2	O2	S2	O12	289.9	321.5
C2	O2	S2	O10	170.7	75.0
H2	C2	C1	H1	58.9	57.7
C1	C2	H2	C3	119.9	119.7
C1	C2	H2	O2	239.3	239.8
H2	C2	C3	H3	181.6	182.8
C3	C2	H2	O2	119.4	120.1
H2	C2	O2	S2	335.3	334.8
S2	O2	C2	H2	335.3	334.8
O11	S2	O2	O12	120.7	227.1
O11	S2	O2	O10	239.9	113.5
O12	S2	O2	O10	119.2	246.4
O2	S2	O10	HO10	119.7	180.0
O2	S2	O11	O12	239.2	123.0
O2	S2	O11	O10	120.0	245.9
O12	S2	O11	O10	240.8	122.9
O11	S2	O10	HO10	240.4	66.5
O2	S2	O12	O11	121.2	237.1
O2	S2	O12	O10	240.6	114.1
O11	S2	O12	O10	119.4	237.1
O12	S2	O10	HO10	0.0	293.6
O2	S2	O10	O11	239.3	113.5
O2	S2	O10	O12	119.7	246.4
O11	S2	O10	O12	240.4	132.9
HO29	O29	S3	O27	360.0	66.4