PDB Chemical Component GTR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GTR

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.520	1.531
C1	O1	1.395	1.429
C1	O5	1.422	1.429
C1	H1	1.100	1.091
C2	C3	1.444	1.531
C2	O2	1.442	1.428
C2	H2	1.100	1.090
C3	C4	1.559	1.532
C3	O3	1.491	1.429
C3	H3	1.100	1.090
C4	C5	1.541	1.531
C4	O4	1.436	1.429
C4	H4	1.100	1.089
C5	C6	1.516	1.506
C5	O5	1.445	1.429
C5	H5	1.099	1.090
C6	O6A	1.250	1.208
C6	O6B	1.237	1.343
O1	HO1	0.950	0.966
O2	HO2	0.950	0.967
O3	HO3	0.950	0.968
O4	HO4	0.950	0.968
O6B	HO6B	0.950	0.967

Bond Angles for GTR

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	111.3	109.5
C2	C1	O5	109.1	109.5
C2	C1	H1	108.7	109.5
C1	C2	C3	110.0	109.1
C1	C2	O2	108.7	109.5
C1	C2	H2	108.3	109.5
O1	C1	O5	107.4	109.5
O1	C1	H1	110.4	109.4
C1	O1	HO1	109.5	114.1
O5	C1	H1	110.0	109.5
C1	O5	C5	110.2	114.1
C3	C2	O2	111.1	109.6
C3	C2	H2	109.3	109.5
C2	C3	C4	112.1	109.1
C2	C3	O3	109.2	109.6
C2	C3	H3	109.8	109.6
O2	C2	H2	109.3	109.6
C2	O2	HO2	109.5	114.1
C4	C3	O3	108.2	109.5
C4	C3	H3	108.3	109.5
C3	C4	C5	105.3	109.2
C3	C4	O4	110.0	109.5
C3	C4	H4	109.0	109.6
O3	C3	H3	109.1	109.6
C3	O3	HO3	109.5	113.9
C5	C4	O4	112.4	109.5
C5	C4	H4	109.2	109.5
C4	C5	C6	110.5	109.5
C4	C5	O5	111.9	109.4
C4	C5	H5	108.6	109.4
O4	C4	H4	110.7	109.6
C4	O4	HO4	109.5	114.0
C6	C5	O5	107.1	109.5
C6	C5	H5	108.9	109.5
C5	C6	O6A	122.7	120.0
C5	C6	O6B	114.4	120.0
O5	C5	H5	109.8	109.5
O6A	C6	O6B	122.9	120.0
C6	O6B	HO6B	109.5	117.0

Torsion Angles for GTR

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	O5	118.4	120.0
O1	C1	C2	H1	238.3	240.1
C2	C1	O1	HO1	180.0	180.0
O5	C1	C2	H1	119.9	120.1
C2	C1	O5	C5	297.1	298.8
C3	C2	C1	O2	238.2	240.1
C3	C2	C1	H2	119.5	119.9
C1	C2	C3	C4	302.4	303.1
C1	C2	C3	O3	182.5	183.2
C1	C2	C3	H3	62.8	62.9
O2	C2	C1	H2	241.3	239.8
C1	C2	O2	HO2	180.0	60.0
C2	C1	O1	O5	240.6	240.0
C2	C1	O1	H1	120.7	120.0
O1	C1	C2	C3	179.1	177.6
O1	C1	C2	O2	300.9	297.5
O1	C1	C2	H2	59.6	57.7
O5	C1	O1	H1	240.1	240.0
O1	C1	O5	C5	176.3	178.8
C2	C1	O5	O1	120.8	120.0
C2	C1	O5	H1	240.9	240.0
O5	C1	C2	C3	60.7	57.6
O5	C1	C2	O2	182.6	177.5
O5	C1	C2	H2	301.2	297.7
O1	C1	O5	H1	120.1	120.0
O5	C1	O1	HO1	299.4	300.0
C4	C5	O5	C1	63.6	61.1
C6	C5	O5	C1	184.8	181.1
C1	O5	C5	H5	302.9	301.2
C2	C1	H1	O1	237.7	240.0
C2	C1	H1	O5	119.4	120.0
H1	C1	C2	C3	300.8	297.5
H1	C1	C2	O2	62.7	57.5
H1	C1	C2	H2	181.4	177.7
O1	C1	H1	O5	241.7	240.0
H1	C1	O1	HO1	59.2	60.0
H1	C1	O5	C5	56.2	58.8
C3	C2	C1	O1	179.1	177.6
C3	C2	C1	O5	60.7	57.6
C3	C2	C1	H1	300.8	297.5
C1	C2	C3	O2	120.4	119.9
C1	C2	C3	H2	241.1	240.2
O2	C2	C3	H2	120.8	120.3
C3	C2	O2	HO2	301.2	179.7
C4	C3	C2	O3	119.9	119.9
C4	C3	C2	H3	239.5	240.1
C2	C3	C4	C5	54.2	56.9
C2	C3	C4	O4	292.9	297.1
C2	C3	C4	H4	171.3	176.9
O3	C3	C2	H3	119.6	120.3
C2	C3	O3	HO3	180.0	300.0
O2	C2	C1	O1	300.9	297.5
O2	C2	C1	O5	182.6	177.5
O2	C2	C1	H1	62.7	57.5
C1	C2	O2	C3	238.8	240.3
C1	C2	O2	H2	118.1	120.1
C3	C2	O2	H2	239.2	239.8
O2	C2	C3	C4	182.0	183.2
O2	C2	C3	O3	62.1	63.3
O2	C2	C3	H3	302.5	303.0
H2	C2	C1	O1	59.6	57.7
H2	C2	C1	O5	301.2	297.7
H2	C2	C1	H1	181.4	177.7
C1	C2	H2	C3	119.9	119.6
C1	C2	H2	O2	241.7	239.8
C3	C2	H2	O2	121.8	120.2
H2	C2	C3	C4	61.2	62.9
H2	C2	C3	O3	301.3	303.0
H2	C2	C3	H3	181.7	182.8
H2	C2	O2	HO2	62.0	299.9
C4	C3	C2	O2	182.0	183.2
C4	C3	C2	H2	61.2	62.9
C2	C3	C4	O3	239.5	240.1
C2	C3	C4	H3	121.3	119.9
O3	C3	C4	H3	241.8	239.8
C4	C3	O3	HO3	57.7	180.4
C5	C4	C3	O4	121.3	119.8
C5	C4	C3	H4	242.9	240.0
C3	C4	C5	C6	184.7	182.4
C3	C4	C5	O5	304.0	302.5
C3	C4	C5	H5	65.3	62.4
O4	C4	C3	H4	121.6	120.2
C3	C4	O4	HO4	180.0	180.0
O3	C3	C2	O2	62.1	63.3
O3	C3	C2	H2	301.3	303.0
C2	C3	O3	C4	122.3	119.6
C2	C3	O3	H3	239.9	239.8
C4	C3	O3	H3	117.6	120.1
O3	C3	C4	C5	174.7	176.8
O3	C3	C4	O4	53.4	57.0
O3	C3	C4	H4	291.8	296.8
H3	C3	C2	O2	302.5	303.0
H3	C3	C2	H2	181.7	182.8
C2	C3	H3	C4	237.2	240.4
C2	C3	H3	O3	119.7	120.2
C4	C3	H3	O3	242.5	239.9
H3	C3	C4	C5	292.9	297.0
H3	C3	C4	O4	171.6	177.2
H3	C3	C4	H4	50.0	57.0
H3	C3	O3	HO3	300.1	60.2
C1	O5	C5	C4	63.6	61.1
C5	C4	C3	O3	174.7	176.8
C5	C4	C3	H3	292.9	297.0
C3	C4	C5	O4	240.2	240.2
C3	C4	C5	H4	117.0	120.0
O4	C4	C5	H4	236.7	239.8
C5	C4	O4	HO4	63.0	60.3
C6	C5	C4	O5	240.7	240.0
C6	C5	C4	H5	119.3	120.0
C4	C5	C6	O6A	111.2	115.0
C4	C5	C6	O6B	290.2	295.1
O5	C5	C4	H5	238.6	240.0
O4	C4	C3	O3	53.4	57.0
O4	C4	C3	H3	171.6	177.2
C3	C4	O4	C5	117.0	119.6
C3	C4	O4	H4	239.5	239.8
C5	C4	O4	H4	122.4	120.2
O4	C4	C5	C6	304.5	302.3
O4	C4	C5	O5	63.8	62.3
O4	C4	C5	H5	185.1	182.2
H4	C4	C3	O3	291.8	296.8
H4	C4	C3	H3	50.0	57.0
C3	C4	H4	C5	245.4	240.3
C3	C4	H4	O4	121.1	120.1
C5	C4	H4	O4	235.8	239.9
H4	C4	C5	C6	67.7	62.5
H4	C4	C5	O5	187.0	182.5
H4	C4	C5	H5	308.4	302.4
H4	C4	O4	HO4	300.6	300.2
C1	O5	C5	C6	184.8	181.1
C6	C5	C4	O4	304.5	302.3
C6	C5	C4	H4	67.7	62.5
C4	C5	C6	O5	122.1	120.0
C4	C5	C6	H5	240.8	240.0
O5	C5	C6	H5	118.7	120.1
O6A	C6	C5	O6B	181.0	180.0
C5	C6	O6B	HO6B	181.0	180.0
C5	O5	C1	H1	56.2	58.8
O5	C5	C4	O4	63.8	62.3
O5	C5	C4	H4	187.0	182.5
C4	C5	O5	C6	238.8	240.0
C4	C5	O5	H5	120.6	119.9
C6	C5	O5	H5	241.9	239.9
O5	C5	C6	O6A	349.1	355.1
O5	C5	C6	O6B	168.1	175.1
H5	C5	C4	O4	185.1	182.2
H5	C5	C4	H4	308.4	302.4
C4	C5	H5	C6	120.3	120.0
C4	C5	H5	O5	237.4	240.1
C6	C5	H5	O5	117.0	120.1
H5	C5	C6	O6A	230.3	235.0
H5	C5	C6	O6B	49.3	55.0
O6A	C6	C5	O5	349.1	355.1
O6A	C6	C5	H5	230.3	235.0
C5	C6	O6A	O6B	178.9	180.0
O6A	C6	O6B	HO6B	0.0	0.0
O6B	C6	C5	O5	168.1	175.1
O6B	C6	C5	H5	49.3	55.0
C5	C6	O6B	O6A	181.0	180.0
HO1	O1	C1	O5	299.4	300.0
HO1	O1	C1	H1	59.2	60.0
HO2	O2	C2	H2	62.0	299.9
HO3	O3	C3	H3	300.1	60.2
HO4	O4	C4	H4	300.6	300.2