PDB Chemical Component GTP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GTP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
PG O1G 1.525 1.480
PG O2G 1.524 1.610
PG O3G 1.443 1.610
PG O3B 1.645 1.610
O2G HOG2 0.950 0.967
O3G HOG3 0.950 0.967
O3B PB 1.655 1.610
PB O1B 1.531 1.481
PB O2B 1.465 1.609
PB O3A 1.558 1.610
O2B HOB2 0.950 0.968
O3A PA 1.608 1.610
PA O1A 1.455 1.481
PA O2A 1.535 1.610
PA O5' 1.661 1.609
O2A HOA2 0.950 0.967
O5' C5' 1.487 1.429
C5' C4' 1.606 1.529
C5' H5' 1.100 1.090
C5' H5'' 1.100 1.090
C4' O4' 1.436 1.438
C4' C3' 1.438 1.541
C4' H4' 1.100 1.090
O4' C1' 1.432 1.443
C3' O3' 1.405 1.429
C3' C2' 1.558 1.548
C3' H3' 1.100 1.090
O3' HO3' 0.949 0.967
C2' O2' 1.316 1.429
C2' C1' 1.716 1.550
C2' H2' 1.099 1.090
O2' HO2' 0.950 0.967
C1' N9 1.510 1.465
C1' H1' 1.100 1.090
N9 C8 1.388 1.364
N9 C4 1.358 1.369
C8 N7 1.352 1.301
C8 H8 1.080 1.080
N7 C5 1.396 1.355
C5 C6 1.259 1.414
C5 C4 1.310 1.400
C6 O6 1.270 1.219
C6 N1 1.504 1.352
N1 C2 1.283 1.363
N1 HN1 0.999 0.970
C2 N2 1.498 1.372
C2 N3 1.323 1.315
N2 HN21 1.000 0.971
N2 HN22 1.000 0.970
N3 C4 1.331 1.338

Bond Angles for GTP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1G PG O2G 115.3 109.4
O1G PG O3G 110.3 109.5
O1G PG O3B 102.1 109.4
O2G PG O3G 116.2 109.5
O2G PG O3B 106.1 109.5
PG O2G HOG2 109.5 114.0
O3G PG O3B 105.2 109.5
PG O3G HOG3 109.5 114.0
PG O3B PB 130.0 134.0
O3B PB O1B 108.0 109.4
O3B PB O2B 109.7 109.5
O3B PB O3A 101.0 109.5
O1B PB O2B 117.3 109.5
O1B PB O3A 110.1 109.5
O2B PB O3A 109.5 109.5
PB O2B HOB2 109.5 114.0
PB O3A PA 129.9 134.0
O3A PA O1A 112.1 109.5
O3A PA O2A 106.3 109.5
O3A PA O5' 100.9 109.5
O1A PA O2A 118.9 109.4
O1A PA O5' 105.5 109.5
O2A PA O5' 111.8 109.5
PA O2A HOA2 109.5 114.0
PA O5' C5' 111.9 123.0
O5' C5' C4' 96.2 109.5
O5' C5' H5' 112.7 109.4
O5' C5' H5'' 112.7 109.5
C4' C5' H5' 112.7 109.5
C4' C5' H5'' 112.7 109.5
C5' C4' O4' 115.4 109.9
C5' C4' C3' 119.2 109.9
C5' C4' H4' 104.3 109.9
H5' C5' H5'' 109.5 109.4
O4' C4' C3' 104.8 107.3
O4' C4' H4' 106.0 109.8
C4' O4' C1' 111.7 107.0
C3' C4' H4' 106.0 110.0
C4' C3' O3' 112.7 110.5
C4' C3' C2' 109.6 104.2
C4' C3' H3' 106.8 110.5
O4' C1' C2' 103.3 103.6
O4' C1' N9 107.1 110.6
O4' C1' H1' 114.5 110.6
O3' C3' C2' 114.6 110.5
O3' C3' H3' 107.2 110.4
C3' O3' HO3' 109.5 114.0
C2' C3' H3' 105.4 110.6
C3' C2' O2' 112.8 110.9
C3' C2' C1' 90.9 102.0
C3' C2' H2' 114.0 110.9
O2' C2' C1' 104.8 110.9
O2' C2' H2' 118.8 110.8
C2' O2' HO2' 109.5 114.0
C1' C2' H2' 111.6 110.9
C2' C1' N9 107.8 110.6
C2' C1' H1' 110.2 110.6
N9 C1' H1' 113.2 110.7
C1' N9 C8 123.6 126.3
C1' N9 C4 122.3 126.2
C8 N9 C4 114.0 107.5
N9 C8 N7 97.8 109.8
N9 C8 H8 131.1 125.1
N9 C4 C5 108.0 106.1
N9 C4 N3 125.1 134.2
N7 C8 H8 131.1 125.1
C8 N7 C5 115.9 109.3
N7 C5 C6 128.2 134.1
N7 C5 C4 103.8 107.2
C6 C5 C4 127.9 118.6
C5 C6 O6 140.0 120.9
C5 C6 N1 110.1 118.4
C5 C4 N3 126.7 119.7
O6 C6 N1 109.6 120.8
C6 N1 C2 114.9 120.3
C6 N1 HN1 122.6 119.9
C2 N1 HN1 122.5 119.8
N1 C2 N2 113.9 119.1
N1 C2 N3 134.5 121.9
N2 C2 N3 110.9 119.0
C2 N2 HN21 120.0 119.9
C2 N2 HN22 120.0 120.0
C2 N3 C4 105.4 121.1
HN21 N2 HN22 120.0 120.0

Torsion Angles for GTP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O2G PG O1G O3G 134.1 240.0
O2G PG O1G O3B 245.5 120.0
O1G PG O2G HOG2 360.0 60.1
O3G PG O1G O3B 111.4 240.0
O1G PG O3G HOG3 0.0 180.0
O1G PG O3B PB 193.8 320.0
O1G PG O2G O3G 228.7 120.0
O1G PG O2G O3B 112.1 240.1
O3G PG O2G O3B 243.5 120.1
O2G PG O3G HOG3 226.4 300.0
O2G PG O3B PB 314.8 200.0
O1G PG O3G O2G 133.6 240.0
O1G PG O3G O3B 250.6 119.9
O2G PG O3G O3B 117.0 239.9
O3G PG O2G HOG2 131.3 300.1
O3G PG O3B PB 78.6 79.9
O1G PG O3B O2G 238.9 120.0
O1G PG O3B O3G 115.2 240.0
O2G PG O3B O3G 236.3 120.1
O3B PG O2G HOG2 247.9 180.0
O3B PG O3G HOG3 109.4 60.1
PG O3B PB O1B 270.7 320.0
PG O3B PB O2B 39.6 80.0
PG O3B PB O3A 155.1 200.1
HOG2 O2G PG O3G 131.3 300.1
HOG2 O2G PG O3B 247.9 180.0
HOG3 O3G PG O3B 109.4 60.1
O1B PB O3B O2B 231.1 240.0
O1B PB O3B O3A 115.6 120.0
O2B PB O3B O3A 244.5 240.0
O3B PB O2B HOB2 236.4 60.0
O3B PB O3A PA 247.7 165.0
O3B PB O1B O2B 124.5 120.0
O3B PB O1B O3A 250.5 240.0
O2B PB O1B O3A 126.0 120.1
O1B PB O2B HOB2 0.0 180.0
O1B PB O3A PA 133.6 45.0
O3B PB O2B O1B 236.4 240.0
O3B PB O2B O3A 110.0 120.0
O1B PB O2B O3A 233.7 240.0
O2B PB O3A PA 3.3 285.0
O3B PB O3A O1B 114.0 120.0
O3B PB O3A O2B 244.3 240.0
O1B PB O3A O2B 130.3 120.0
O3A PB O2B HOB2 126.4 300.0
PB O3A PA O1A 302.6 320.0
PB O3A PA O2A 74.1 80.0
PB O3A PA O5' 190.8 200.0
HOB2 O2B PB O3A 126.4 300.0
O1A PA O3A O2A 228.5 240.1
O1A PA O3A O5' 111.8 120.1
O2A PA O3A O5' 243.3 240.0
O3A PA O2A HOA2 232.4 60.0
O3A PA O5' C5' 301.0 175.0
O3A PA O1A O2A 124.8 119.9
O3A PA O1A O5' 251.1 239.9
O2A PA O1A O5' 126.3 120.0
O1A PA O2A HOA2 360.0 180.0
O1A PA O5' C5' 184.3 55.0
O3A PA O2A O1A 232.5 240.1
O3A PA O2A O5' 109.2 120.0
O1A PA O2A O5' 236.7 240.0
O2A PA O5' C5' 53.7 295.0
O3A PA O5' O1A 116.8 120.0
O3A PA O5' O2A 247.4 240.0
O1A PA O5' O2A 130.6 120.0
O5' PA O2A HOA2 123.2 300.0
PA O5' C5' C4' 203.9 180.0
PA O5' C5' H5' 321.7 300.0
PA O5' C5' H5'' 86.2 60.0
HOA2 O2A PA O5' 123.2 300.0
C4' C5' O5' H5' 242.2 240.0
C4' C5' O5' H5'' 117.8 120.0
O5' C5' C4' O4' 296.7 66.4
O5' C5' C4' C3' 62.9 184.3
O5' C5' C4' H4' 180.8 305.5
H5' C5' O5' H5'' 235.5 240.1
O5' C5' C4' H5' 117.8 120.0
O5' C5' C4' H5'' 242.2 240.0
H5' C5' C4' H5'' 124.5 120.0
O4' C4' C5' C3' 233.8 242.2
O4' C4' C5' H4' 115.9 121.0
C5' C4' O4' C1' 128.2 145.9
C3' C4' C5' H4' 242.1 238.8
C5' C4' C3' O3' 134.2 119.8
C5' C4' C3' C2' 263.1 238.5
C5' C4' C3' H3' 16.8 357.4
O5' C5' H5' C4' 252.5 240.0
O5' C5' H5' H5'' 126.3 120.0
C4' C5' H5' H5'' 233.8 240.0
H5' C5' C4' O4' 179.0 306.4
H5' C5' C4' C3' 305.1 64.3
H5' C5' C4' H4' 63.1 185.5
O5' C5' H5'' C4' 107.5 120.0
O5' C5' H5'' H5' 233.7 240.1
C4' C5' H5'' H5' 126.2 120.0
H5'' C5' C4' O4' 54.5 186.5
H5'' C5' C4' C3' 180.7 304.3
H5'' C5' C4' H4' 298.6 65.5
O4' C4' C5' H5' 179.0 306.4
O4' C4' C5' H5'' 54.5 186.5
C5' C4' O4' C3' 133.2 119.4
C5' C4' O4' H4' 245.1 239.0
C3' C4' O4' H4' 111.9 119.6
O4' C4' C3' O3' 265.3 239.3
O4' C4' C3' C2' 34.1 358.0
O4' C4' C3' H3' 147.9 116.8
C4' O4' C1' C2' 338.0 320.0
C4' O4' C1' N9 224.2 201.5
C4' O4' C1' H1' 97.9 78.5
C3' C4' C5' H5' 305.1 64.3
C3' C4' C5' H5'' 180.7 304.3
C5' C4' C3' O4' 229.0 240.6
C5' C4' C3' H4' 117.0 121.1
O4' C4' C3' H4' 248.1 240.6
C3' C4' O4' C1' 355.0 26.5
O3' C3' C4' C2' 231.1 241.3
O3' C3' C4' H3' 117.4 122.5
C4' C3' O3' HO3' 180.0 180.0
C2' C3' C4' H3' 246.3 241.1
C4' C3' C2' O2' 211.0 220.9
C4' C3' C2' C1' 317.5 339.2
C4' C3' C2' H2' 71.7 97.3
H4' C4' C5' H5' 63.1 185.5
H4' C4' C5' H5'' 298.6 65.5
C5' C4' H4' O4' 122.3 121.0
C5' C4' H4' C3' 233.4 238.9
O4' C4' H4' C3' 111.1 117.9
H4' C4' O4' C1' 243.1 266.9
H4' C4' C3' O3' 17.2 358.7
H4' C4' C3' C2' 146.1 117.4
H4' C4' C3' H3' 259.8 236.3
C1' O4' C4' C3' 355.0 26.5
C1' O4' C4' H4' 243.1 266.9
C3' C2' C1' O4' 36.9 37.0
O2' C2' C1' O4' 150.7 155.2
O4' C1' C2' H2' 280.5 278.8
C2' C1' O4' N9 113.7 118.5
C2' C1' O4' H1' 240.1 241.5
N9 C1' O4' H1' 126.4 123.0
O4' C1' N9 C8 61.3 23.6
O4' C1' N9 C4 236.5 203.3
O3' C3' C4' H4' 17.2 358.7
C4' C3' O3' C2' 126.2 114.8
C4' C3' O3' H3' 242.8 237.5
C2' C3' O3' H3' 116.6 122.7
O3' C3' C2' O2' 338.8 339.6
O3' C3' C2' C1' 85.3 97.8
O3' C3' C2' H2' 199.5 216.0
C2' C3' C4' H4' 146.1 117.4
C4' C3' C2' O3' 232.2 241.3
C4' C3' C2' H3' 114.6 118.8
O4' C1' C2' C3' 36.9 37.0
O3' C3' C2' H3' 242.4 237.4
C2' C3' O3' HO3' 53.8 65.2
O2' C2' C3' C1' 253.5 241.8
O2' C2' C3' H2' 139.3 123.6
C3' C2' O2' HO2' 180.0 298.6
C1' C2' C3' H2' 245.7 241.8
C3' C2' C1' N9 150.1 155.5
C3' C2' C1' H1' 274.1 278.5
H3' C3' C4' H4' 259.8 236.3
C4' C3' H3' O3' 121.0 122.5
C4' C3' H3' C2' 243.4 245.1
O3' C3' H3' C2' 122.5 122.6
H3' C3' O3' HO3' 297.2 302.5
H3' C3' C2' O2' 96.4 102.2
H3' C3' C2' C1' 202.9 220.4
H3' C3' C2' H2' 317.1 338.5
HO3' O3' C3' C2' 53.8 65.2
HO3' O3' C3' H3' 297.2 302.5
O4' C1' C2' O2' 150.7 155.2
O2' C2' C3' H3' 96.4 102.2
C3' C2' O2' C1' 97.4 112.7
C3' C2' O2' H2' 222.9 236.3
C1' C2' O2' H2' 125.4 123.7
O2' C2' C1' N9 264.0 273.7
O2' C2' C1' H1' 27.9 36.7
O4' C1' C2' N9 246.8 241.5
O4' C1' C2' H1' 122.8 118.5
C1' C2' C3' H3' 202.9 220.4
C3' C2' C1' O2' 246.1 241.8
C3' C2' C1' H2' 116.3 118.1
O2' C2' C1' H2' 230.2 236.4
C1' C2' O2' HO2' 82.6 185.9
N9 C1' C2' H1' 236.0 237.0
C2' C1' N9 C8 310.7 269.5
C2' C1' N9 C4 125.8 89.2
H2' C2' C3' H3' 317.1 338.5
C3' C2' H2' O2' 136.7 123.7
C3' C2' H2' C1' 258.7 247.4
O2' C2' H2' C1' 122.1 123.7
H2' C2' O2' HO2' 317.2 62.2
H2' C2' C1' N9 33.7 37.3
H2' C2' C1' H1' 157.7 160.3
HO2' O2' C2' C1' 82.6 185.9
HO2' O2' C2' H2' 317.2 62.2
O4' C1' N9 C2' 110.6 114.1
O4' C1' N9 H1' 232.8 237.0
N9 C1' C2' H2' 33.7 37.3
C2' C1' N9 H1' 122.2 122.9
C8 N9 C1' C4 184.8 180.3
C1' N9 C8 N7 180.4 180.0
C1' N9 C8 H8 0.4 0.0
C1' N9 C4 C5 182.8 179.9
C1' N9 C4 N3 7.0 0.7
O4' C1' H1' C2' 244.0 245.8
O4' C1' H1' N9 123.2 122.9
H1' C1' C2' H2' 157.7 160.3
C2' C1' H1' N9 239.1 237.1
H1' C1' N9 C8 188.5 146.5
H1' C1' N9 C4 3.6 326.2
C8 N9 C1' H1' 188.5 146.5
C1' N9 C8 C4 175.5 179.7
C8 N9 C4 C5 358.4 359.6
C8 N9 C4 N3 182.5 180.5
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 353.3 0.0
C4 N9 C1' H1' 3.6 326.2
C1' N9 C4 C8 184.4 180.3
C4 N9 C8 N7 4.9 0.2
C4 N9 C8 H8 184.9 180.3
N7 C5 C4 N9 357.5 0.4
C6 C5 C4 N9 182.4 180.1
C5 C4 N9 N3 175.9 179.1
C2 N3 C4 N9 180.6 179.6
N7 C8 N9 C4 4.9 0.2
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 181.3 180.1
C8 N7 C5 C4 6.2 359.7
H8 C8 N9 C4 184.9 180.3
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 173.4 180.0
N9 C4 C5 N7 357.5 0.4
C5 N7 C8 H8 173.4 180.0
C6 C5 N7 C4 175.0 180.4
N7 C5 C6 O6 359.0 359.9
N7 C5 C6 N1 185.5 179.9
N7 C5 C4 N3 173.3 179.7
N9 C4 C5 C6 182.4 180.1
N7 C5 C6 C4 186.1 179.6
C6 C5 C4 N3 358.2 359.4
O6 C6 C5 N1 173.5 180.0
C5 C6 N1 C2 358.3 360.0
C5 C6 N1 HN1 178.4 180.0
N9 C4 C5 N3 184.2 180.7
N7 C5 C4 C6 175.1 180.3
C4 C5 C6 O6 172.9 180.3
C4 C5 C6 N1 359.4 0.3
C2 N3 C4 C5 5.5 0.6
O6 C6 C5 C4 172.9 180.3
C5 C6 O6 N1 186.5 180.0
O6 C6 N1 C2 182.8 180.0
O6 C6 N1 HN1 2.8 0.0
N1 C6 C5 C4 359.4 0.3
C5 C6 N1 O6 175.6 180.0
C2 N1 C6 HN1 180.0 180.0
C6 N1 C2 N2 176.8 180.1
C6 N1 C2 N3 7.6 360.0
C6 N1 C2 HN1 180.0 180.0
N2 C2 N1 N3 169.2 180.1
N1 C2 N2 HN21 188.2 360.0
N1 C2 N2 HN22 8.3 180.0
N1 C2 N3 C4 351.0 359.7
C6 N1 HN1 C2 180.0 180.0
HN1 N1 C2 N2 356.8 0.1
HN1 N1 C2 N3 187.6 180.0
N2 C2 N1 HN1 356.8 0.1
N1 C2 N2 N3 188.2 179.9
N2 C2 N3 C4 181.5 179.7
HN21 N2 C2 HN22 180.0 180.0
N9 C4 N3 C2 180.6 179.6
C5 C4 N3 C2 5.5 0.6
N3 C2 N1 HN1 187.6 180.0
N1 C2 N3 N2 169.4 180.1
N3 C2 N2 HN21 360.0 180.0
N3 C2 N2 HN22 180.0 0.0
HN21 N2 C2 N3 360.0 180.0
C2 N2 HN21 HN22 180.0 180.0
HN22 N2 C2 N3 180.0 0.0
C2 N2 HN22 HN21 180.0 180.0
N9 C4 N3 C5 175.1 179.0