PDB Chemical Component GTB

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GTB

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 CA1 1.473 1.469
N1 HN11 0.999 1.009
N1 HN12 1.000 1.009
CA1 C1 1.457 1.507
CA1 CB1 1.561 1.530
CA1 HA1 1.100 1.090
C1 O11 1.223 1.209
C1 O12 1.229 1.342
CB1 CG1 1.555 1.529
CB1 HB11 1.100 1.090
CB1 HB12 1.100 1.090
CG1 CD1 1.455 1.507
CG1 HG11 1.100 1.090
CG1 HG12 1.100 1.091
CD1 OE1 1.226 1.212
CD1 N2 1.307 1.348
N2 CA2 1.411 1.465
N2 HN2 1.000 0.970
CA2 C2 1.465 1.507
CA2 CB2 1.563 1.530
CA2 HA2 1.100 1.090
C2 O2 1.224 1.213
C2 N3 1.294 1.348
CB2 SG2 1.824 1.814
CB2 HB21 1.100 1.090
CB2 HB22 1.100 1.089
SG2 C' 1.821 1.814
N3 CA3 1.398 1.466
N3 HN3 1.000 0.970
CA3 C3 1.447 1.508
CA3 HA31 1.100 1.090
CA3 HA32 1.100 1.090
C3 O31 1.222 1.208
C3 O32 1.226 1.343
C' C1' 1.485 1.507
C' H'1 1.100 1.091
C' H'2 1.100 1.090
C1' C2' 1.413 1.382
C1' C6' 1.412 1.382
C2' C3' 1.407 1.382
C2' H2' 1.080 1.080
C3' C4' 1.420 1.382
C3' H3' 1.080 1.080
C4' N41 1.350 1.480
C4' C5' 1.419 1.383
N41 O41 1.174 1.218
N41 O42 1.168 1.217
C5' C6' 1.407 1.382
C5' H5' 1.080 1.080
C6' H6' 1.080 1.080
O12 HO1 0.950 0.967
O32 HO3 0.951 0.967

Bond Angles for GTB

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA1 N1 HN11 109.5 111.0
CA1 N1 HN12 109.4 111.0
N1 CA1 C1 107.8 109.5
N1 CA1 CB1 110.9 109.5
N1 CA1 HA1 111.7 109.5
HN11 N1 HN12 109.5 111.0
C1 CA1 CB1 114.9 109.5
C1 CA1 HA1 107.4 109.4
CA1 C1 O11 122.6 120.0
CA1 C1 O12 119.9 120.0
CB1 CA1 HA1 104.1 109.5
CA1 CB1 CG1 114.0 109.5
CA1 CB1 HB11 108.0 109.5
CA1 CB1 HB12 108.0 109.5
O11 C1 O12 117.5 120.0
C1 O12 HO1 109.5 117.0
CG1 CB1 HB11 108.0 109.4
CG1 CB1 HB12 108.0 109.5
CB1 CG1 CD1 113.7 109.5
CB1 CG1 HG11 108.1 109.5
CB1 CG1 HG12 108.1 109.5
HB11 CB1 HB12 110.9 109.5
CD1 CG1 HG11 108.1 109.5
CD1 CG1 HG12 108.1 109.5
CG1 CD1 OE1 118.6 120.0
CG1 CD1 N2 119.5 120.0
HG11 CG1 HG12 110.8 109.4
OE1 CD1 N2 121.9 120.0
CD1 N2 CA2 128.8 120.0
CD1 N2 HN2 115.5 120.0
CA2 N2 HN2 115.6 120.0
N2 CA2 C2 114.5 109.5
N2 CA2 CB2 113.2 109.5
N2 CA2 HA2 104.0 109.5
C2 CA2 CB2 112.3 109.5
C2 CA2 HA2 105.0 109.4
CA2 C2 O2 119.6 120.0
CA2 C2 N3 124.1 120.0
CB2 CA2 HA2 106.7 109.5
CA2 CB2 SG2 111.8 109.5
CA2 CB2 HB21 108.7 109.5
CA2 CB2 HB22 108.7 109.5
O2 C2 N3 116.3 120.0
C2 N3 CA3 123.9 120.0
C2 N3 HN3 118.0 120.0
SG2 CB2 HB21 108.7 109.4
SG2 CB2 HB22 108.7 109.5
CB2 SG2 C' 104.8 103.0
HB21 CB2 HB22 110.2 109.5
SG2 C' C1' 108.4 109.5
SG2 C' H'1 109.8 109.4
SG2 C' H'2 109.9 109.5
CA3 N3 HN3 118.1 120.0
N3 CA3 C3 110.3 109.4
N3 CA3 HA31 109.2 109.5
N3 CA3 HA32 109.2 109.5
C3 CA3 HA31 109.2 109.4
C3 CA3 HA32 109.2 109.5
CA3 C3 O31 120.9 120.0
CA3 C3 O32 120.7 120.0
HA31 CA3 HA32 109.7 109.5
O31 C3 O32 118.4 120.0
C3 O32 HO3 109.5 117.0
C1' C' H'1 109.8 109.5
C1' C' H'2 109.8 109.5
C' C1' C2' 121.1 120.0
C' C1' C6' 120.7 120.0
H'1 C' H'2 109.1 109.5
C2' C1' C6' 118.2 120.0
C1' C2' C3' 120.8 120.0
C1' C2' H2' 119.6 120.0
C1' C6' C5' 120.9 120.0
C1' C6' H6' 119.6 120.0
C3' C2' H2' 119.6 120.0
C2' C3' C4' 121.6 120.0
C2' C3' H3' 119.2 120.0
C4' C3' H3' 119.2 120.0
C3' C4' N41 121.5 120.0
C3' C4' C5' 117.0 120.0
N41 C4' C5' 121.5 119.9
C4' N41 O41 122.8 120.0
C4' N41 O42 123.0 120.1
C4' C5' C6' 121.6 119.9
C4' C5' H5' 119.2 120.0
O41 N41 O42 114.2 120.0
C6' C5' H5' 119.2 120.1
C5' C6' H6' 119.6 120.0

Torsion Angles for GTB

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
HN11 N1 CA1 HN12 240.0 236.1
C1 CA1 N1 CB1 126.7 120.0
C1 CA1 N1 HA1 242.3 240.1
N1 CA1 C1 O11 241.2 340.0
N1 CA1 C1 O12 61.5 160.0
CB1 CA1 N1 HA1 115.6 120.0
N1 CA1 CB1 CG1 300.5 295.0
N1 CA1 CB1 HB11 60.5 55.0
N1 CA1 CB1 HB12 180.5 175.0
CA1 N1 HN11 HN12 120.0 123.9
HN11 N1 CA1 C1 180.0 296.1
HN11 N1 CA1 CB1 53.3 176.1
HN11 N1 CA1 HA1 297.7 56.1
CA1 N1 HN12 HN11 240.0 236.1
HN12 N1 CA1 C1 300.0 60.0
HN12 N1 CA1 CB1 173.3 300.0
HN12 N1 CA1 HA1 57.7 180.0
C1 CA1 N1 HN11 180.0 296.1
C1 CA1 N1 HN12 300.0 60.0
N1 CA1 C1 CB1 235.7 240.0
N1 CA1 C1 HA1 120.5 120.0
CB1 CA1 C1 HA1 244.7 240.0
C1 CA1 CB1 CG1 177.8 175.0
C1 CA1 CB1 HB11 297.8 295.0
C1 CA1 CB1 HB12 57.9 55.0
O11 C1 CA1 O12 179.7 180.0
CA1 C1 O12 HO1 179.7 180.0
CB1 CA1 N1 HN11 53.3 176.1
CB1 CA1 N1 HN12 173.3 300.0
N1 CA1 CB1 C1 122.6 120.0
N1 CA1 CB1 HA1 239.8 240.0
C1 CA1 CB1 HA1 117.1 120.0
CB1 CA1 C1 O11 5.5 100.0
CB1 CA1 C1 O12 185.8 280.0
CG1 CB1 CA1 HB11 240.0 240.0
CG1 CB1 CA1 HB12 120.0 120.0
CA1 CB1 CG1 CD1 184.5 180.0
CA1 CB1 CG1 HG11 304.6 300.0
CA1 CB1 CG1 HG12 64.5 60.0
HB11 CB1 CA1 HB12 240.0 240.0
HA1 CA1 N1 HN11 297.7 56.1
HA1 CA1 N1 HN12 57.7 180.0
N1 CA1 HA1 C1 242.0 240.0
N1 CA1 HA1 CB1 119.7 120.0
C1 CA1 HA1 CB1 237.7 240.0
HA1 CA1 C1 O11 120.8 220.0
HA1 CA1 C1 O12 301.1 40.0
HA1 CA1 CB1 CG1 60.7 55.0
HA1 CA1 CB1 HB11 180.7 175.0
HA1 CA1 CB1 HB12 300.7 295.0
O11 C1 CA1 CB1 5.5 100.0
O11 C1 CA1 HA1 120.8 220.0
CA1 C1 O11 O12 180.3 180.0
O11 C1 O12 HO1 360.0 0.0
O12 C1 CA1 CB1 185.8 280.0
O12 C1 CA1 HA1 301.1 40.0
CA1 C1 O12 O11 179.7 180.0
CG1 CB1 CA1 HA1 60.7 55.0
CA1 CB1 CG1 HB11 120.0 120.0
CA1 CB1 CG1 HB12 240.0 240.0
HB11 CB1 CG1 HB12 120.0 120.0
CD1 CG1 CB1 HG11 240.0 240.0
CD1 CG1 CB1 HG12 120.0 120.0
CB1 CG1 CD1 OE1 121.0 0.0
CB1 CG1 CD1 N2 298.8 180.0
HG11 CG1 CB1 HG12 240.0 240.0
HB11 CB1 CA1 HA1 180.7 175.0
CA1 CB1 HB11 CG1 236.3 240.0
CA1 CB1 HB11 HB12 118.2 120.0
CG1 CB1 HB11 HB12 241.9 240.0
HB11 CB1 CG1 CD1 64.5 60.0
HB11 CB1 CG1 HG11 184.6 180.0
HB11 CB1 CG1 HG12 304.5 300.0
HB12 CB1 CA1 HA1 300.7 295.0
CA1 CB1 HB12 CG1 123.7 120.0
CA1 CB1 HB12 HB11 241.8 240.0
CG1 CB1 HB12 HB11 118.1 120.0
HB12 CB1 CG1 CD1 304.5 300.0
HB12 CB1 CG1 HG11 64.5 60.0
HB12 CB1 CG1 HG12 184.5 180.0
CD1 CG1 CB1 HB11 64.5 60.0
CD1 CG1 CB1 HB12 304.5 300.0
CB1 CG1 CD1 HG11 120.0 120.0
CB1 CG1 CD1 HG12 240.0 240.0
HG11 CG1 CD1 HG12 120.0 120.0
OE1 CD1 CG1 N2 182.1 180.0
CG1 CD1 N2 CA2 196.1 180.0
CG1 CD1 N2 HN2 16.1 0.0
HG11 CG1 CB1 HB11 184.6 180.0
HG11 CG1 CB1 HB12 64.5 60.0
CB1 CG1 HG11 CD1 236.5 240.0
CB1 CG1 HG11 HG12 118.2 120.0
CD1 CG1 HG11 HG12 241.7 240.0
HG11 CG1 CD1 OE1 1.0 240.0
HG11 CG1 CD1 N2 178.8 60.0
HG12 CG1 CB1 HB11 304.5 300.0
HG12 CG1 CB1 HB12 184.5 180.0
CB1 CG1 HG12 CD1 123.5 120.0
CB1 CG1 HG12 HG11 241.8 240.0
CD1 CG1 HG12 HG11 118.3 120.0
HG12 CG1 CD1 OE1 241.0 120.1
HG12 CG1 CD1 N2 58.8 300.0
OE1 CD1 CG1 HG11 1.0 240.0
OE1 CD1 CG1 HG12 241.0 120.1
CG1 CD1 OE1 N2 177.8 180.0
OE1 CD1 N2 CA2 13.8 360.0
OE1 CD1 N2 HN2 193.9 180.0
N2 CD1 CG1 HG11 178.8 60.0
N2 CD1 CG1 HG12 58.8 300.0
CG1 CD1 N2 OE1 182.2 180.0
CA2 N2 CD1 HN2 180.0 180.0
CD1 N2 CA2 C2 66.3 275.0
CD1 N2 CA2 CB2 295.7 155.0
CD1 N2 CA2 HA2 180.4 35.0
CD1 N2 CA2 HN2 180.0 180.0
C2 CA2 N2 CB2 130.6 120.0
C2 CA2 N2 HA2 245.9 240.0
N2 CA2 C2 O2 170.1 360.0
N2 CA2 C2 N3 349.7 180.0
CB2 CA2 N2 HA2 115.4 120.0
N2 CA2 CB2 SG2 308.5 300.0
N2 CA2 CB2 HB21 68.5 60.0
N2 CA2 CB2 HB22 188.5 180.0
CD1 N2 HN2 CA2 180.0 180.0
HN2 N2 CA2 C2 246.3 95.0
HN2 N2 CA2 CB2 115.7 335.0
HN2 N2 CA2 HA2 0.4 215.0
C2 CA2 N2 HN2 246.3 95.0
N2 CA2 C2 CB2 229.0 240.0
N2 CA2 C2 HA2 113.5 120.0
CB2 CA2 C2 HA2 244.5 240.0
C2 CA2 CB2 SG2 176.8 180.0
C2 CA2 CB2 HB21 296.9 300.0
C2 CA2 CB2 HB22 56.8 60.0
O2 C2 CA2 N3 180.4 180.0
CA2 C2 N3 CA3 83.3 180.0
CA2 C2 N3 HN3 263.3 0.0
CB2 CA2 N2 HN2 115.7 335.0
N2 CA2 CB2 C2 131.7 120.0
N2 CA2 CB2 HA2 246.2 240.0
C2 CA2 CB2 HA2 114.6 120.0
CB2 CA2 C2 O2 301.0 120.0
CB2 CA2 C2 N3 120.7 300.0
SG2 CB2 CA2 HB21 240.0 240.1
SG2 CB2 CA2 HB22 120.0 120.0
CA2 CB2 SG2 C' 155.8 180.0
HB21 CB2 CA2 HB22 240.0 239.9
HA2 CA2 N2 HN2 0.4 215.0
N2 CA2 HA2 C2 239.3 240.0
N2 CA2 HA2 CB2 119.9 120.0
C2 CA2 HA2 CB2 240.6 240.0
HA2 CA2 C2 O2 56.6 240.0
HA2 CA2 C2 N3 236.2 60.0
HA2 CA2 CB2 SG2 62.3 60.1
HA2 CA2 CB2 HB21 182.3 180.0
HA2 CA2 CB2 HB22 302.3 300.1
O2 C2 CA2 CB2 301.0 120.0
O2 C2 CA2 HA2 56.6 240.0
CA2 C2 O2 N3 179.7 180.0
O2 C2 N3 CA3 263.0 360.0
O2 C2 N3 HN3 83.0 180.1
N3 C2 CA2 CB2 120.7 300.0
N3 C2 CA2 HA2 236.2 60.0
CA2 C2 N3 O2 180.4 180.0
CA3 N3 C2 HN3 180.0 179.9
C2 N3 CA3 C3 192.0 180.0
C2 N3 CA3 HA31 312.0 300.0
C2 N3 CA3 HA32 72.0 60.0
SG2 CB2 CA2 HA2 62.3 60.1
CA2 CB2 SG2 HB21 120.0 119.9
CA2 CB2 SG2 HB22 240.0 240.0
HB21 CB2 SG2 HB22 120.0 120.0
CB2 SG2 C' C1' 180.6 180.0
CB2 SG2 C' H'1 300.6 300.0
CB2 SG2 C' H'2 60.6 60.0
HB21 CB2 CA2 HA2 182.3 180.0
CA2 CB2 HB21 SG2 238.1 240.1
CA2 CB2 HB21 HB22 119.0 120.1
SG2 CB2 HB21 HB22 240.9 240.0
HB21 CB2 SG2 C' 35.8 60.0
HB22 CB2 CA2 HA2 302.3 300.1
CA2 CB2 HB22 SG2 121.9 120.0
CA2 CB2 HB22 HB21 241.0 240.0
SG2 CB2 HB22 HB21 119.1 120.0
HB22 CB2 SG2 C' 275.8 300.0
C' SG2 CB2 HB21 35.8 60.0
C' SG2 CB2 HB22 275.8 300.0
C1' C' SG2 H'1 240.0 240.0
C1' C' SG2 H'2 120.0 120.0
SG2 C' C1' C2' 96.9 90.0
SG2 C' C1' C6' 278.9 269.7
H'1 C' SG2 H'2 240.0 240.0
C2 N3 CA3 HN3 180.0 180.1
C3 CA3 N3 HA31 240.0 240.0
C3 CA3 N3 HA32 120.0 120.0
N3 CA3 C3 O31 118.2 360.0
N3 CA3 C3 O32 297.7 180.1
HA31 CA3 N3 HA32 240.0 239.9
C2 N3 HN3 CA3 180.0 179.9
HN3 N3 CA3 C3 12.0 360.0
HN3 N3 CA3 HA31 132.0 119.9
HN3 N3 CA3 HA32 252.0 240.0
C3 CA3 N3 HN3 12.0 360.0
N3 CA3 C3 HA31 120.0 120.0
N3 CA3 C3 HA32 240.0 240.0
HA31 CA3 C3 HA32 120.0 120.0
O31 C3 CA3 O32 180.5 179.9
CA3 C3 O32 HO3 180.5 180.0
HA31 CA3 N3 HN3 132.0 119.9
N3 CA3 HA31 C3 239.3 240.1
N3 CA3 HA31 HA32 119.7 120.0
C3 CA3 HA31 HA32 240.3 240.0
HA31 CA3 C3 O31 358.2 240.0
HA31 CA3 C3 O32 177.7 60.1
HA32 CA3 N3 HN3 252.0 240.0
N3 CA3 HA32 C3 120.7 119.9
N3 CA3 HA32 HA31 240.3 239.9
C3 CA3 HA32 HA31 119.7 120.0
HA32 CA3 C3 O31 238.2 120.0
HA32 CA3 C3 O32 57.7 300.0
O31 C3 CA3 HA31 358.2 240.0
O31 C3 CA3 HA32 238.2 120.0
CA3 C3 O31 O32 179.5 180.1
O31 C3 O32 HO3 0.0 0.1
O32 C3 CA3 HA31 177.7 60.1
O32 C3 CA3 HA32 57.7 300.0
CA3 C3 O32 O31 180.5 179.9
SG2 C' C1' H'1 120.0 120.0
SG2 C' C1' H'2 240.0 240.0
H'1 C' C1' H'2 120.0 120.0
C2' C1' C' C6' 177.9 180.3
C' C1' C2' C3' 182.8 180.0
C' C1' C2' H2' 2.8 360.0
C' C1' C6' C5' 177.4 179.9
C' C1' C6' H6' 357.4 360.0
SG2 C' H'1 C1' 240.9 240.0
SG2 C' H'1 H'2 120.4 120.0
C1' C' H'1 H'2 239.6 240.0
H'1 C' C1' C2' 336.9 330.0
H'1 C' C1' C6' 159.0 149.8
SG2 C' H'2 C1' 119.1 120.0
SG2 C' H'2 H'1 239.6 240.0
C1' C' H'2 H'1 120.4 120.0
H'2 C' C1' C2' 216.9 210.0
H'2 C' C1' C6' 39.0 29.7
C2' C1' C' H'1 336.9 330.0
C2' C1' C' H'2 216.9 210.0
C' C1' C2' C6' 182.0 179.7
C2' C1' C6' C5' 359.4 359.6
C2' C1' C6' H6' 179.4 179.7
C3' C2' C1' H2' 180.0 180.1
C1' C2' C3' C4' 359.7 359.9
C1' C2' C3' H3' 179.7 180.0
C6' C1' C' H'1 159.0 149.8
C6' C1' C' H'2 39.0 29.7
C' C1' C6' C2' 178.0 180.3
C6' C1' C2' C3' 0.8 0.3
C6' C1' C2' H2' 180.8 180.2
C4' C5' C6' C1' 359.9 0.3
C1' C6' C5' H5' 179.8 180.3
C5' C6' C1' H6' 180.0 179.9
C3' C2' C1' C6' 0.8 0.3
C1' C2' C3' H2' 180.0 179.9
C4' C3' C2' H3' 180.0 179.9
C2' C3' C4' N41 179.1 180.0
C2' C3' C4' C5' 359.6 0.0
H2' C2' C1' C6' 180.8 180.2
C1' C2' H2' C3' 180.0 180.1
H2' C2' C3' C4' 179.7 180.0
H2' C2' C3' H3' 359.7 0.1
C4' C3' C2' H2' 179.7 180.0
C2' C3' C4' H3' 180.0 180.1
N41 C4' C3' C5' 179.6 180.0
C3' C4' N41 O41 359.7 360.0
C3' C4' N41 O42 180.4 180.1
C3' C4' C5' C6' 0.6 359.9
C3' C4' C5' H5' 180.7 179.9
H3' C3' C2' H2' 359.7 0.1
C2' C3' H3' C4' 180.0 179.9
H3' C3' C4' N41 359.1 359.9
H3' C3' C4' C5' 179.6 179.9
N41 C4' C3' H3' 359.1 359.9
C3' C4' N41 C5' 180.5 180.0
N41 C4' C5' C6' 181.1 179.9
N41 C4' C5' H5' 1.1 359.9
O41 N41 C4' O42 179.3 179.9
C1' C6' C5' C4' 359.9 0.3
C5' C4' C3' H3' 179.6 179.9
C3' C4' C5' N41 179.6 180.0
C5' C4' N41 O41 179.2 180.0
C5' C4' N41 O42 359.9 0.1
C6' C5' C4' H5' 180.0 179.9
C4' C5' C6' H6' 179.9 180.2
O41 N41 C4' C5' 179.2 180.0
C4' N41 O41 O42 180.6 180.1
O42 N41 C4' C5' 359.9 0.1
C4' N41 O42 O41 179.4 179.9
C1' C6' C5' H6' 180.0 180.1
C4' C5' C6' H5' 180.0 180.1
C4' C5' H5' C6' 180.0 179.9
H5' C5' C6' H6' 359.8 0.2
C1' C6' H6' C5' 180.0 179.9
H6' C6' C5' H5' 359.8 0.2