PDB Chemical Component GSY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for GSY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O15 |
C14 |
1.415 |
1.429 |
| C14 |
C13 |
1.571 |
1.530 |
| C13 |
N7 |
1.461 |
1.464 |
| N7 |
C5 |
1.332 |
1.389 |
| N7 |
C8 |
1.295 |
1.362 |
| C5 |
C6 |
1.410 |
1.401 |
| C5 |
C4 |
1.373 |
1.399 |
| C6 |
O11 |
1.254 |
1.221 |
| C6 |
N1 |
1.413 |
1.352 |
| N1 |
C2 |
1.387 |
1.363 |
| C2 |
N2 |
1.304 |
1.373 |
| C2 |
N3 |
1.356 |
1.313 |
| N3 |
C4 |
1.328 |
1.348 |
| C4 |
N9 |
1.320 |
1.342 |
| N9 |
C8 |
1.302 |
1.316 |
| C8 |
S10 |
1.791 |
1.762 |
| O15 |
H15 |
0.950 |
0.967 |
| C14 |
H141 |
1.101 |
1.090 |
| C14 |
H142 |
1.100 |
1.091 |
| C13 |
H131 |
1.100 |
1.090 |
| C13 |
H132 |
1.100 |
1.090 |
| N1 |
H1 |
1.000 |
0.969 |
| N2 |
H21N |
1.000 |
0.970 |
| N2 |
H22N |
1.000 |
0.971 |
| S10 |
H10 |
1.300 |
1.410 |
Bond Angles for GSY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O15 |
C14 |
C13 |
107.4 |
109.5 |
| C14 |
O15 |
H15 |
109.5 |
114.0 |
| O15 |
C14 |
H141 |
110.0 |
109.5 |
| O15 |
C14 |
H142 |
110.0 |
109.5 |
| C14 |
C13 |
N7 |
107.7 |
109.5 |
| C13 |
C14 |
H141 |
110.0 |
109.5 |
| C13 |
C14 |
H142 |
110.0 |
109.5 |
| C14 |
C13 |
H131 |
109.9 |
109.5 |
| C14 |
C13 |
H132 |
109.9 |
109.5 |
| C13 |
N7 |
C5 |
123.9 |
126.6 |
| C13 |
N7 |
C8 |
126.5 |
126.6 |
| N7 |
C13 |
H131 |
110.0 |
109.5 |
| N7 |
C13 |
H132 |
109.9 |
109.5 |
| C5 |
N7 |
C8 |
109.5 |
106.8 |
| N7 |
C5 |
C6 |
134.2 |
134.6 |
| N7 |
C5 |
C4 |
105.4 |
106.3 |
| N7 |
C8 |
N9 |
109.0 |
109.6 |
| N7 |
C8 |
S10 |
129.1 |
125.2 |
| C6 |
C5 |
C4 |
120.4 |
119.1 |
| C5 |
C6 |
O11 |
120.7 |
120.7 |
| C5 |
C6 |
N1 |
117.9 |
118.5 |
| C5 |
C4 |
N3 |
120.3 |
119.2 |
| C5 |
C4 |
N9 |
107.1 |
107.3 |
| O11 |
C6 |
N1 |
121.4 |
120.8 |
| C6 |
N1 |
C2 |
118.8 |
120.3 |
| C6 |
N1 |
H1 |
120.6 |
119.9 |
| N1 |
C2 |
N2 |
120.5 |
119.0 |
| N1 |
C2 |
N3 |
120.5 |
121.9 |
| C2 |
N1 |
H1 |
120.6 |
119.9 |
| N2 |
C2 |
N3 |
119.1 |
119.0 |
| C2 |
N2 |
H21N |
120.0 |
120.0 |
| C2 |
N2 |
H22N |
120.0 |
120.0 |
| C2 |
N3 |
C4 |
122.1 |
120.9 |
| N3 |
C4 |
N9 |
132.6 |
133.5 |
| C4 |
N9 |
C8 |
108.8 |
110.0 |
| N9 |
C8 |
S10 |
121.7 |
125.2 |
| C8 |
S10 |
H10 |
102.0 |
100.0 |
| H141 |
C14 |
H142 |
109.5 |
109.4 |
| H131 |
C13 |
H132 |
109.4 |
109.4 |
| H21N |
N2 |
H22N |
120.0 |
120.0 |
Torsion Angles for GSY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O15 |
C14 |
C13 |
N7 |
279.9 |
180.0 |
| C13 |
C14 |
O15 |
H141 |
240.3 |
240.0 |
| C13 |
C14 |
O15 |
H142 |
119.7 |
120.0 |
| O15 |
C14 |
C13 |
H131 |
39.7 |
300.0 |
| O15 |
C14 |
C13 |
H132 |
160.2 |
59.9 |
| H141 |
C14 |
O15 |
H142 |
239.4 |
240.0 |
| C13 |
C14 |
O15 |
H15 |
180.0 |
179.9 |
| O15 |
C14 |
C13 |
H141 |
119.7 |
120.0 |
| O15 |
C14 |
C13 |
H142 |
240.3 |
240.0 |
| C14 |
C13 |
N7 |
C5 |
287.0 |
90.0 |
| C14 |
C13 |
N7 |
C8 |
109.6 |
269.7 |
| N7 |
C13 |
C14 |
H131 |
240.3 |
240.0 |
| N7 |
C13 |
C14 |
H132 |
119.7 |
120.1 |
| H141 |
C14 |
C13 |
H142 |
120.7 |
120.0 |
| H131 |
C13 |
C14 |
H132 |
239.5 |
240.1 |
| N7 |
C13 |
C14 |
H141 |
160.3 |
60.0 |
| N7 |
C13 |
C14 |
H142 |
39.6 |
300.0 |
| C14 |
C13 |
N7 |
H131 |
119.7 |
120.0 |
| C14 |
C13 |
N7 |
H132 |
240.3 |
240.0 |
| C5 |
N7 |
C13 |
C8 |
177.4 |
180.2 |
| C13 |
N7 |
C5 |
C6 |
359.0 |
360.0 |
| C13 |
N7 |
C5 |
C4 |
179.5 |
180.0 |
| C13 |
N7 |
C8 |
N9 |
181.5 |
179.8 |
| C13 |
N7 |
C8 |
S10 |
357.0 |
360.0 |
| H131 |
C13 |
N7 |
H132 |
120.6 |
119.9 |
| C13 |
N7 |
C5 |
C8 |
182.2 |
179.8 |
| C5 |
N7 |
C13 |
H131 |
167.3 |
330.0 |
| C5 |
N7 |
C13 |
H132 |
46.7 |
210.0 |
| C5 |
N7 |
C8 |
N9 |
3.8 |
359.6 |
| C5 |
N7 |
C8 |
S10 |
179.2 |
179.8 |
| C6 |
C5 |
N7 |
C4 |
179.5 |
179.9 |
| N7 |
C5 |
C6 |
O11 |
0.5 |
0.1 |
| N7 |
C5 |
C6 |
N1 |
180.3 |
180.0 |
| N7 |
C5 |
C4 |
N3 |
178.7 |
180.0 |
| N7 |
C5 |
C4 |
N9 |
0.6 |
360.0 |
| C13 |
N7 |
C8 |
C5 |
177.7 |
180.2 |
| C8 |
N7 |
C13 |
H131 |
349.8 |
149.7 |
| C8 |
N7 |
C13 |
H132 |
229.3 |
29.8 |
| C8 |
N7 |
C5 |
C6 |
176.8 |
180.2 |
| C8 |
N7 |
C5 |
C4 |
357.3 |
0.2 |
| C4 |
N9 |
C8 |
N7 |
356.7 |
0.4 |
| N9 |
C8 |
N7 |
S10 |
184.5 |
179.9 |
| N7 |
C8 |
S10 |
H10 |
185.0 |
90.0 |
| C6 |
C5 |
N7 |
C8 |
176.8 |
180.2 |
| N7 |
C5 |
C6 |
C4 |
180.5 |
180.1 |
| C6 |
C5 |
C4 |
N3 |
359.1 |
0.1 |
| C6 |
C5 |
C4 |
N9 |
181.0 |
180.0 |
| O11 |
C6 |
C5 |
N1 |
180.1 |
180.1 |
| C5 |
C6 |
N1 |
C2 |
2.0 |
0.1 |
| C5 |
C6 |
N1 |
H1 |
182.0 |
180.0 |
| C4 |
C5 |
N7 |
C8 |
357.3 |
0.2 |
| N7 |
C5 |
C4 |
C6 |
179.6 |
179.9 |
| C4 |
C5 |
C6 |
O11 |
179.9 |
180.0 |
| C4 |
C5 |
C6 |
N1 |
359.8 |
359.9 |
| C2 |
N3 |
C4 |
C5 |
0.2 |
359.9 |
| N3 |
C4 |
C5 |
N9 |
178.1 |
180.1 |
| C5 |
C4 |
N9 |
C8 |
1.6 |
359.8 |
| O11 |
C6 |
C5 |
C4 |
179.9 |
180.0 |
| C5 |
C6 |
O11 |
N1 |
179.9 |
179.9 |
| O11 |
C6 |
N1 |
C2 |
181.9 |
180.0 |
| O11 |
C6 |
N1 |
H1 |
1.9 |
359.9 |
| N1 |
C6 |
C5 |
C4 |
359.8 |
359.9 |
| C5 |
C6 |
N1 |
O11 |
180.1 |
180.1 |
| C6 |
N1 |
C2 |
N2 |
177.3 |
180.0 |
| C6 |
N1 |
C2 |
N3 |
357.3 |
359.9 |
| C2 |
N1 |
C6 |
H1 |
180.0 |
180.1 |
| C6 |
N1 |
C2 |
H1 |
180.0 |
179.9 |
| N2 |
C2 |
N1 |
N3 |
180.0 |
180.0 |
| N1 |
C2 |
N2 |
H21N |
180.0 |
360.0 |
| N1 |
C2 |
N2 |
H22N |
360.0 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
1.6 |
0.1 |
| N1 |
C2 |
N2 |
N3 |
180.0 |
180.0 |
| N2 |
C2 |
N1 |
H1 |
357.3 |
0.1 |
| N2 |
C2 |
N3 |
C4 |
181.6 |
180.0 |
| H21N |
N2 |
C2 |
H22N |
180.0 |
180.0 |
| C5 |
C4 |
N3 |
C2 |
0.2 |
359.9 |
| N1 |
C2 |
N3 |
N2 |
180.0 |
180.0 |
| N3 |
C2 |
N1 |
H1 |
177.3 |
180.0 |
| N3 |
C2 |
N2 |
H21N |
360.0 |
180.0 |
| N3 |
C2 |
N2 |
H22N |
180.0 |
0.0 |
| C2 |
N3 |
C4 |
N9 |
177.7 |
180.0 |
| C5 |
C4 |
N3 |
N9 |
182.5 |
179.9 |
| N3 |
C4 |
N9 |
C8 |
183.9 |
179.7 |
| N7 |
C8 |
N9 |
C4 |
356.7 |
0.4 |
| C5 |
C4 |
N9 |
N3 |
177.7 |
180.1 |
| C4 |
N9 |
C8 |
S10 |
180.8 |
180.2 |
| N7 |
C8 |
N9 |
S10 |
175.9 |
180.1 |
| N9 |
C8 |
S10 |
H10 |
360.0 |
270.2 |
| N7 |
C8 |
S10 |
N9 |
185.0 |
179.8 |
| H15 |
O15 |
C14 |
C13 |
180.0 |
179.9 |
| H15 |
O15 |
C14 |
H141 |
299.7 |
300.0 |
| H15 |
O15 |
C14 |
H142 |
60.3 |
59.9 |
| O15 |
C14 |
H141 |
C13 |
241.9 |
239.9 |
| H141 |
C14 |
O15 |
H15 |
299.7 |
300.0 |
| O15 |
C14 |
H141 |
H142 |
120.9 |
120.0 |
| H141 |
C14 |
C13 |
N7 |
160.3 |
60.0 |
| C13 |
C14 |
H141 |
H142 |
239.0 |
240.0 |
| H141 |
C14 |
C13 |
H131 |
280.0 |
180.0 |
| H141 |
C14 |
C13 |
H132 |
40.5 |
299.9 |
| O15 |
C14 |
H142 |
C13 |
118.1 |
120.1 |
| H142 |
C14 |
O15 |
H15 |
60.3 |
59.9 |
| O15 |
C14 |
H142 |
H141 |
239.1 |
240.0 |
| H142 |
C14 |
C13 |
N7 |
39.6 |
300.0 |
| C13 |
C14 |
H142 |
H141 |
121.0 |
120.0 |
| H142 |
C14 |
C13 |
H131 |
159.3 |
60.0 |
| H142 |
C14 |
C13 |
H132 |
279.9 |
180.0 |
| C14 |
C13 |
H131 |
N7 |
241.7 |
239.9 |
| H131 |
C13 |
C14 |
H141 |
280.0 |
180.0 |
| H131 |
C13 |
C14 |
H142 |
159.3 |
60.0 |
| C14 |
C13 |
H131 |
H132 |
120.8 |
119.9 |
| H131 |
C13 |
N7 |
C5 |
167.3 |
330.0 |
| H131 |
C13 |
N7 |
C8 |
349.8 |
149.7 |
| N7 |
C13 |
H131 |
H132 |
239.1 |
240.0 |
| C14 |
C13 |
H132 |
N7 |
118.3 |
120.1 |
| H132 |
C13 |
C14 |
H141 |
40.5 |
299.9 |
| H132 |
C13 |
C14 |
H142 |
279.9 |
180.0 |
| C14 |
C13 |
H132 |
H131 |
239.2 |
240.1 |
| H132 |
C13 |
N7 |
C5 |
46.7 |
210.0 |
| H132 |
C13 |
N7 |
C8 |
229.3 |
29.8 |
| N7 |
C13 |
H132 |
H131 |
120.9 |
120.0 |
| C6 |
N1 |
H1 |
C2 |
180.0 |
180.1 |
| H1 |
N1 |
C2 |
N2 |
357.3 |
0.1 |
| H1 |
N1 |
C2 |
N3 |
177.3 |
180.0 |
| H21N |
N2 |
C2 |
N3 |
360.0 |
180.0 |
| C2 |
N2 |
H21N |
H22N |
180.0 |
180.0 |
| H22N |
N2 |
C2 |
N3 |
180.0 |
0.0 |
| C2 |
N2 |
H22N |
H21N |
180.0 |
180.0 |