Atom Nomenclature for GSY

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for GSY

Atom Name (V3) Atom Name (V2)
O15 O15
C14 C14
C13 C13
N7 N7
C5 C5
C6 C6
O11 O11
N1 N1
C2 C2
N2 N2
N3 N3
C4 C4
N9 N9
C8 C8
S10 S10
H15 H15
H141 H141
H142 H142
H131 H131
H132 H132
H1 H1
H21N H21N
H22N H22N
H10 H10