Atom Nomenclature for GST

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for GST

Atom Name (V3) Atom Name (V2)
PA PA
O1A O1A
O2A O2A
O3A O3A
O1B O1B
PB PB
O2B O2B
O3B O3B
S1 S1
C1 C1
C2 C2
C3 C3
C10 C10
C4 C4
C5 C5
C6 C6
C7 C7
C9 C9
C8 C8
H1A H1A
H3A H3A
H3B H3B
H11 1H1
H12 2H1
H2 H2
H101 1H10
H102 2H10
H103 3H10
H41 1H4
H42 2H4
H51 1H5
H52 2H5
H6 H6
H91 1H9
H92 2H9
H93 3H9
H81 1H8
H82 2H8
H83 3H8