PDB Chemical Component GSS

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GSS

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.477 1.479
P OP2 1.480 1.610
P OP3 1.610 1.609
P O5' 1.601 1.610
OP2 HOP2 0.951 0.968
OP3 HOP3 0.951 0.967
O5' C5' 1.429 1.428
C5' C4' 1.519 1.530
C5' H5' 1.091 1.090
C5' H5'' 1.092 1.089
C4' O4' 1.445 1.445
C4' C3' 1.522 1.550
C4' H4' 1.093 1.090
O4' C1' 1.443 1.437
C3' O3' 1.441 1.429
C3' C2' 1.514 1.548
C3' H3' 1.091 1.089
O3' HO3' 0.950 0.967
C2' C1' 1.516 1.541
C2' H2' 1.089 1.090
C2' H2'' 1.088 1.089
C1' N9 1.481 1.465
C1' H1' 1.089 1.090
N9 C8 1.358 1.364
N9 C4 1.381 1.368
C8 N7 1.293 1.301
C8 H8 1.090 1.080
N7 C5 1.397 1.355
C5 C6 1.422 1.415
C5 C4 1.389 1.399
C6 O6 1.230 1.219
C6 N1 1.389 1.351
N1 C2 1.380 1.363
N1 H1 1.010 0.970
C2 N2 1.339 1.373
C2 N3 1.340 1.314
N2 CA 1.494 1.463
N2 H2 1.010 0.970
N3 C4 1.354 1.338
CA CB 1.531 1.531
CA CJ 1.512 1.506
CA HA 1.081 1.090
CB OB 1.422 1.429
CB HB1 1.083 1.090
CB HB2 1.077 1.090
OB HB 0.960 0.968
CJ CO 1.398 1.383
CJ CO' 1.399 1.382
CO CM 1.398 1.382
CO HO 1.080 1.080
CO' CM' 1.400 1.383
CO' HO' 1.080 1.079
CM CP 1.399 1.383
CM HM 1.081 1.079
CM' CP 1.400 1.382
CM' HM' 1.079 1.080
CP HP 1.079 1.080

Bond Angles for GSS

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 120.4 109.5
OP1 P OP3 109.0 109.5
OP1 P O5' 107.1 109.5
OP2 P OP3 107.8 109.4
OP2 P O5' 109.3 109.5
P OP2 HOP2 120.4 106.8
OP3 P O5' 101.7 109.5
P OP3 HOP3 109.0 106.8
P O5' C5' 118.5 106.8
O5' C5' C4' 111.9 109.5
O5' C5' H5' 108.8 109.5
O5' C5' H5'' 108.9 109.5
C4' C5' H5' 109.2 109.5
C4' C5' H5'' 109.1 109.5
C5' C4' O4' 110.8 110.8
C5' C4' C3' 110.5 110.7
C5' C4' H4' 109.2 110.6
H5' C5' H5'' 108.9 109.4
O4' C4' C3' 108.2 103.5
O4' C4' H4' 109.0 110.5
C4' O4' C1' 110.2 106.9
C3' C4' H4' 109.1 110.6
C4' C3' O3' 110.0 110.9
C4' C3' C2' 105.4 102.1
C4' C3' H3' 109.6 110.9
O4' C1' C2' 107.1 107.4
O4' C1' N9 110.8 109.9
O4' C1' H1' 108.9 109.9
O3' C3' C2' 112.4 110.9
O3' C3' H3' 110.0 110.7
C3' O3' HO3' 110.0 106.8
C2' C3' H3' 109.4 111.0
C3' C2' C1' 106.2 104.1
C3' C2' H2' 109.7 110.5
C3' C2' H2'' 110.7 110.5
C1' C2' H2' 110.2 110.5
C1' C2' H2'' 109.9 110.5
C2' C1' N9 112.1 109.9
C2' C1' H1' 108.8 109.8
H2' C2' H2'' 110.1 110.6
N9 C1' H1' 109.0 109.9
C1' N9 C8 129.9 126.3
C1' N9 C4 126.4 126.3
C8 N9 C4 103.6 107.5
N9 C8 N7 117.6 109.8
N9 C8 H8 121.2 125.1
N9 C4 C5 106.3 106.1
N9 C4 N3 126.0 134.2
N7 C8 H8 121.1 125.0
C8 N7 C5 101.9 109.3
N7 C5 C6 129.8 134.1
N7 C5 C4 110.6 107.3
C6 C5 C4 119.6 118.6
C5 C6 O6 128.5 120.8
C5 C6 N1 111.6 118.3
C5 C4 N3 127.7 119.7
O6 C6 N1 120.0 120.9
C6 N1 C2 125.3 120.4
C6 N1 H1 115.7 119.8
C2 N1 H1 119.0 119.8
N1 C2 N2 116.0 119.1
N1 C2 N3 123.6 121.9
N2 C2 N3 120.5 119.0
C2 N2 CA 120.5 120.0
C2 N2 H2 119.7 120.0
C2 N3 C4 112.3 121.1
CA N2 H2 119.7 120.0
N2 CA CB 109.4 109.4
N2 CA CJ 109.9 109.6
N2 CA HA 109.3 109.5
CB CA CJ 109.5 109.4
CB CA HA 109.3 109.4
CA CB OB 109.3 109.4
CA CB HB1 109.4 109.5
CA CB HB2 109.7 109.4
CJ CA HA 109.4 109.5
CA CJ CO 120.1 120.0
CA CJ CO' 120.0 120.0
OB CB HB1 110.0 109.5
OB CB HB2 109.2 109.5
CB OB HB 107.9 106.7
HB1 CB HB2 109.2 109.5
CO CJ CO' 120.0 120.0
CJ CO CM 120.1 120.0
CJ CO HO 119.9 120.0
CJ CO' CM' 120.0 120.0
CJ CO' HO' 120.0 120.0
CM CO HO 120.0 120.0
CO CM CP 120.0 120.0
CO CM HM 120.1 120.0
CM' CO' HO' 120.0 120.0
CO' CM' CP 120.0 120.0
CO' CM' HM' 120.0 120.0
CP CM HM 120.0 120.0
CM CP CM' 120.0 120.0
CM CP HP 120.0 120.0
CP CM' HM' 120.0 120.0
CM' CP HP 120.0 120.1

Torsion Angles for GSS

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 125.2 120.0
OP2 P OP1 O5' 234.5 240.0
OP1 P OP2 HOP2 180.0 300.0
OP3 P OP1 O5' 109.3 120.0
OP1 P OP3 HOP3 180.0 180.0
OP1 P O5' C5' 45.4 60.0
OP1 P OP2 OP3 234.3 240.0
OP1 P OP2 O5' 124.5 120.0
OP3 P OP2 O5' 250.2 240.0
OP2 P OP3 HOP3 47.8 60.0
OP2 P O5' C5' 177.3 180.0
OP1 P OP3 OP2 132.2 120.0
OP1 P OP3 O5' 247.1 240.0
OP2 P OP3 O5' 114.9 120.0
OP3 P OP2 HOP2 305.7 60.0
OP3 P O5' C5' 291.1 300.0
OP1 P O5' OP2 228.1 239.9
OP1 P O5' OP3 114.3 120.0
OP2 P O5' OP3 246.2 240.0
O5' P OP2 HOP2 55.5 180.0
O5' P OP3 HOP3 292.9 300.0
P O5' C5' C4' 183.9 180.0
P O5' C5' H5' 63.1 60.0
P O5' C5' H5'' 304.5 300.0
HOP2 OP2 P OP3 305.7 60.0
HOP2 OP2 P O5' 55.5 180.0
HOP3 OP3 P O5' 292.9 300.0
C4' C5' O5' H5' 120.8 120.0
C4' C5' O5' H5'' 239.3 240.0
O5' C5' C4' O4' 296.4 65.8
O5' C5' C4' C3' 56.3 180.0
O5' C5' C4' H4' 176.3 302.9
H5' C5' O5' H5'' 118.6 120.0
O5' C5' C4' H5' 239.5 240.0
O5' C5' C4' H5'' 120.6 120.0
H5' C5' C4' H5'' 241.1 240.0
O4' C4' C5' C3' 240.1 245.8
O4' C4' C5' H4' 120.1 122.9
C5' C4' O4' C1' 126.7 158.6
C3' C4' C5' H4' 240.0 237.1
C5' C4' C3' O3' 122.8 86.1
C5' C4' C3' C2' 244.2 204.3
C5' C4' C3' H3' 1.8 322.6
O5' C5' H5' C4' 122.4 120.0
O5' C5' H5' H5'' 241.4 240.0
C4' C5' H5' H5'' 119.0 120.0
H5' C5' C4' O4' 56.9 185.8
H5' C5' C4' C3' 176.8 300.0
H5' C5' C4' H4' 296.8 62.9
O5' C5' H5'' C4' 237.6 240.0
O5' C5' H5'' H5' 118.5 120.0
C4' C5' H5'' H5' 240.9 240.0
H5'' C5' C4' O4' 175.8 305.7
H5'' C5' C4' C3' 295.7 60.0
H5'' C5' C4' H4' 55.7 182.8
O4' C4' C5' H5' 56.9 185.8
O4' C4' C5' H5'' 175.8 305.7
C5' C4' O4' C3' 121.2 118.7
C5' C4' O4' H4' 239.8 237.1
C3' C4' O4' H4' 118.6 118.4
O4' C4' C3' O3' 244.2 204.8
O4' C4' C3' C2' 5.6 323.1
O4' C4' C3' H3' 123.2 81.4
C4' O4' C1' C2' 345.7 333.6
C4' O4' C1' N9 223.1 214.2
C4' O4' C1' H1' 103.2 93.1
C3' C4' C5' H5' 176.8 300.0
C3' C4' C5' H5'' 295.7 60.0
C5' C4' C3' O4' 238.6 241.2
C5' C4' C3' H4' 120.1 122.8
O4' C4' C3' H4' 241.5 241.6
C3' C4' O4' C1' 5.4 39.9
O3' C3' C4' C2' 238.6 241.8
O3' C3' C4' H3' 121.1 123.5
C4' C3' O3' HO3' 179.9 174.2
C2' C3' C4' H3' 242.4 241.7
C4' C3' C2' C1' 346.1 20.9
C4' C3' C2' H2' 105.2 262.3
C4' C3' C2' H2'' 226.8 139.5
H4' C4' C5' H5' 296.8 62.9
H4' C4' C5' H5'' 55.7 182.8
C5' C4' H4' O4' 121.2 123.1
C5' C4' H4' C3' 239.2 237.1
O4' C4' H4' C3' 118.0 114.0
H4' C4' O4' C1' 246.9 281.5
H4' C4' C3' O3' 2.8 323.2
H4' C4' C3' C2' 124.2 81.4
H4' C4' C3' H3' 241.7 199.7
C1' O4' C4' C3' 5.4 39.9
C1' O4' C4' H4' 246.9 281.5
C3' C2' C1' O4' 17.5 2.0
O4' C1' C2' H2' 258.7 120.6
O4' C1' C2' H2'' 137.3 243.3
C2' C1' O4' N9 122.6 119.5
C2' C1' O4' H1' 242.5 240.5
N9 C1' O4' H1' 119.9 121.0
O4' C1' N9 C8 57.7 28.3
O4' C1' N9 C4 243.1 208.2
O3' C3' C4' H4' 2.8 323.2
C4' C3' O3' C2' 117.1 112.8
C4' C3' O3' H3' 239.2 236.4
C2' C3' O3' H3' 122.1 123.7
O3' C3' C2' C1' 105.9 139.1
O3' C3' C2' H2' 225.0 20.5
O3' C3' C2' H2'' 346.6 257.8
C2' C3' C4' H4' 124.2 81.4
C4' C3' C2' O3' 240.2 241.8
C4' C3' C2' H3' 117.7 118.2
O4' C1' C2' C3' 17.5 2.0
O3' C3' C2' H3' 237.5 236.5
C2' C3' O3' HO3' 62.9 61.4
C1' C2' C3' H2' 240.9 118.6
C1' C2' C3' H2'' 119.3 241.4
C3' C2' C1' N9 139.3 121.4
C3' C2' C1' H1' 259.9 242.4
H2' C2' C3' H2'' 238.3 122.7
H3' C3' C4' H4' 241.7 199.7
C4' C3' H3' O3' 121.1 123.6
C4' C3' H3' C2' 245.0 247.2
O3' C3' H3' C2' 123.9 123.6
H3' C3' O3' HO3' 300.8 297.7
H3' C3' C2' C1' 228.4 262.7
H3' C3' C2' H2' 347.4 144.0
H3' C3' C2' H2'' 109.1 21.3
HO3' O3' C3' C2' 62.9 61.4
HO3' O3' C3' H3' 300.8 297.7
O4' C1' C2' N9 238.2 240.5
O4' C1' C2' H1' 117.6 119.5
C1' C2' C3' H3' 228.4 262.7
C3' C2' C1' H2' 118.8 241.3
C3' C2' C1' H2'' 240.2 118.6
H2' C2' C1' H2'' 121.4 237.3
N9 C1' C2' H1' 239.4 239.0
C2' C1' N9 C8 298.1 270.3
C2' C1' N9 C4 123.5 90.3
H2' C2' C3' H3' 347.4 144.0
C3' C2' H2' C1' 243.4 114.7
C3' C2' H2' H2'' 122.1 237.4
C1' C2' H2' H2'' 238.7 122.7
H2' C2' C1' N9 20.5 240.1
H2' C2' C1' H1' 141.1 1.1
H2'' C2' C3' H3' 109.1 21.3
C3' C2' H2'' C1' 117.0 245.3
C3' C2' H2'' H2' 238.5 122.7
C1' C2' H2'' H2' 121.5 237.4
H2'' C2' C1' N9 259.1 2.8
H2'' C2' C1' H1' 19.7 123.8
O4' C1' N9 C2' 119.6 118.0
O4' C1' N9 H1' 240.2 238.9
N9 C1' C2' H2' 20.5 240.1
N9 C1' C2' H2'' 259.1 2.8
C2' C1' N9 H1' 120.6 121.0
C8 N9 C1' C4 174.6 180.0
C1' N9 C8 N7 185.1 180.0
C1' N9 C8 H8 5.8 360.0
C1' N9 C4 C5 175.1 180.0
C1' N9 C4 N3 355.4 0.1
O4' C1' H1' C2' 243.6 242.0
O4' C1' H1' N9 121.0 121.0
H1' C1' C2' H2' 141.1 1.1
H1' C1' C2' H2'' 19.7 123.8
C2' C1' H1' N9 237.4 239.0
H1' C1' N9 C8 177.5 149.4
H1' C1' N9 C4 2.9 329.3
C8 N9 C1' H1' 177.5 149.4
C1' N9 C8 C4 184.5 180.0
C8 N9 C4 C5 359.4 360.0
C8 N9 C4 N3 179.6 180.0
N7 C8 N9 H8 179.3 180.0
N9 C8 N7 C5 359.7 360.0
C4 N9 C1' H1' 2.9 329.3
C1' N9 C4 C8 175.7 180.0
C4 N9 C8 N7 0.6 0.0
C4 N9 C8 H8 181.3 180.0
N7 C5 C4 N9 0.4 360.0
C6 C5 C4 N9 180.4 180.0
C5 C4 N9 N3 179.8 180.0
C2 N3 C4 N9 179.8 180.0
N7 C8 N9 C4 0.6 0.0
N9 C8 N7 H8 180.7 180.0
C8 N7 C5 C6 179.9 180.0
C8 N7 C5 C4 359.9 0.0
H8 C8 N9 C4 181.3 180.0
N9 C8 H8 N7 179.2 180.0
H8 C8 N7 C5 178.9 180.0
N9 C4 C5 N7 0.4 360.0
C5 N7 C8 H8 178.9 180.0
C6 C5 N7 C4 180.0 180.0
N7 C5 C6 O6 359.3 0.0
N7 C5 C6 N1 179.8 179.7
N7 C5 C4 N3 180.2 180.0
N9 C4 C5 C6 180.4 180.0
N7 C5 C6 C4 180.0 180.0
C6 C5 C4 N3 0.2 360.0
O6 C6 C5 N1 179.5 180.3
C5 C6 N1 C2 359.9 0.5
C5 C6 N1 H1 179.6 180.0
N9 C4 C5 N3 180.2 180.0
N7 C5 C4 C6 180.0 180.0
C4 C5 C6 O6 179.3 180.0
C4 C5 C6 N1 359.8 359.7
C2 N3 C4 C5 0.1 0.1
O6 C6 C5 C4 179.3 180.0
C5 C6 O6 N1 180.6 179.7
O6 C6 N1 C2 180.4 180.3
O6 C6 N1 H1 0.0 359.7
N1 C6 C5 C4 359.8 359.7
C5 C6 N1 O6 179.5 180.3
C2 N1 C6 H1 180.3 180.5
C6 N1 C2 N2 182.6 179.7
C6 N1 C2 N3 0.4 359.5
C6 N1 C2 H1 179.7 179.5
N2 C2 N1 N3 182.2 180.3
N1 C2 N2 CA 176.0 179.8
N1 C2 N2 H2 357.4 359.7
N1 C2 N3 C4 359.6 0.2
C6 N1 H1 C2 180.3 180.5
H1 N1 C2 N2 2.9 0.3
H1 N1 C2 N3 180.7 180.0
N2 C2 N1 H1 2.9 0.3
N1 C2 N2 N3 177.9 179.7
N2 C2 N3 C4 177.4 179.9
CA N2 C2 H2 178.5 180.1
C2 N2 CA CB 188.1 270.0
C2 N2 CA CJ 67.8 150.0
C2 N2 CA HA 307.7 29.9
N9 C4 N3 C2 179.8 180.0
C5 C4 N3 C2 0.1 0.1
N3 C2 N1 H1 180.7 180.0
N1 C2 N3 N2 182.3 180.3
N3 C2 N2 CA 358.1 0.0
N3 C2 N2 H2 179.6 179.9
CA N2 C2 N3 358.1 0.0
C2 N2 CA H2 181.5 179.9
CB CA N2 CJ 120.3 120.0
CB CA N2 HA 240.4 240.1
N2 CA CB OB 320.9 300.0
N2 CA CB HB1 200.3 180.0
N2 CA CB HB2 80.6 59.9
CJ CA N2 HA 120.1 120.1
N2 CA CJ CO 27.3 210.0
N2 CA CJ CO' 207.5 29.6
H2 N2 C2 N3 179.6 179.9
C2 N2 H2 CA 178.5 180.1
H2 N2 CA CB 6.6 90.1
H2 N2 CA CJ 246.3 330.1
H2 N2 CA HA 126.2 210.0
N9 C4 N3 C5 179.7 180.0
CB CA N2 H2 6.6 90.1
N2 CA CB CJ 239.5 239.9
N2 CA CB HA 119.6 120.0
CJ CA CB HA 240.1 240.1
CB CA CJ CO 267.1 90.0
CB CA CJ CO' 87.3 269.7
OB CB CA HB1 120.6 120.0
OB CB CA HB2 240.3 240.1
CA CB OB HB 290.0 180.0
HB1 CB CA HB2 119.7 120.0
CJ CA N2 H2 246.3 330.1
N2 CA CJ CB 120.2 120.0
N2 CA CJ HA 240.0 239.9
CB CA CJ HA 119.8 119.9
CJ CA CB OB 81.4 60.1
CJ CA CB HB1 320.8 300.0
CJ CA CB HB2 201.1 180.0
CO CJ CA CO' 179.8 180.4
CA CJ CO CM 180.1 180.0
CA CJ CO HO 360.0 359.9
CA CJ CO' CM' 179.9 179.9
CA CJ CO' HO' 359.8 0.3
HA CA N2 H2 126.2 210.0
N2 CA HA CB 240.3 240.1
N2 CA HA CJ 120.4 120.2
CB CA HA CJ 240.1 240.1
HA CA CB OB 201.3 180.0
HA CA CB HB1 80.7 60.0
HA CA CB HB2 321.0 299.9
HA CA CJ CO 147.3 330.1
HA CA CJ CO' 327.5 149.8
OB CB CA CJ 81.4 60.1
OB CB CA HA 201.3 180.0
CA CB OB HB1 239.8 240.0
CA CB OB HB2 120.0 119.9
HB1 CB OB HB2 240.2 239.9
HB1 CB CA CJ 320.8 300.0
HB1 CB CA HA 80.7 60.0
CA CB HB1 OB 120.1 120.0
CA CB HB1 HB2 240.0 240.0
OB CB HB1 HB2 119.9 120.0
HB1 CB OB HB 50.2 300.0
HB2 CB CA CJ 201.1 180.0
HB2 CB CA HA 321.0 299.9
CA CB HB2 OB 240.2 240.1
CA CB HB2 HB1 119.9 120.0
OB CB HB2 HB1 239.6 239.9
HB2 CB OB HB 170.0 60.1
HB OB CB HB1 50.2 300.0
HB OB CB HB2 170.0 60.1
CO CJ CA HA 147.3 330.1
CA CJ CO CO' 180.2 179.6
CO CJ CO' CM' 0.0 359.5
CO CJ CO' HO' 180.0 180.0
CM CO CJ HO 180.2 180.1
CJ CO CM CP 0.0 360.0
CJ CO CM HM 180.1 179.9
CO' CJ CA HA 327.5 149.8
CA CJ CO' CO 179.8 180.4
CO' CJ CO CM 360.0 0.3
CO' CJ CO HO 179.8 180.2
CM' CO' CJ HO' 180.0 179.5
CJ CO' CM' CP 0.0 0.4
CJ CO' CM' HM' 180.0 180.3
CM CO CJ CO' 360.0 0.3
CJ CO CM HO 179.8 179.9
CP CM CO HM 179.9 180.0
CO CM CP CM' 0.0 359.9
CO CM CP HP 180.0 180.0
HO CO CJ CO' 179.8 180.2
CJ CO HO CM 180.2 180.1
HO CO CM CP 180.2 180.0
HO CO CM HM 0.2 0.0
CJ CO' CM' HO' 180.0 180.5
CM CP CM' CO' 360.0 359.9
CP CM' CO' HM' 180.0 180.1
CO' CM' CP HP 180.0 179.8
CJ CO' HO' CM' 180.0 179.5
HO' CO' CM' CP 180.0 179.9
HO' CO' CM' HM' 0.0 359.8
CP CM CO HO 180.2 180.0
CO CM CP HM 180.1 180.0
CO' CM' CP CM 360.0 359.9
CM CP CM' HM' 180.0 180.0
CM' CP CM HP 180.0 179.9
HM CM CO HO 0.2 0.0
CO CM HM CP 179.9 180.0
HM CM CP CM' 179.9 180.0
HM CM CP HP 360.0 0.0
CP CM' CO' HO' 180.0 179.9
CO' CM' CP HM' 180.0 179.9
CM' CP CM HM 179.9 180.0
CM CP CM' HP 180.0 180.1
HM' CM' CO' HO' 0.0 359.8
CO' CM' HM' CP 180.0 180.1
HM' CM' CP HP 360.0 359.9
HP CP CM HM 360.0 0.0
CM CP HP CM' 180.0 179.9
HP CP CM' HM' 360.0 359.9