PDB Chemical Component GSR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GSR

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.479 1.479
P OP2 1.482 1.609
P OP3 1.614 1.610
P O5' 1.610 1.610
OP2 HOP2 0.950 0.967
OP3 HOP3 0.950 0.966
O5' C5' 1.428 1.428
C5' C4' 1.526 1.530
C5' H5' 1.089 1.090
C5' H5'' 1.090 1.089
C4' O4' 1.443 1.445
C4' C3' 1.525 1.550
C4' H4' 1.090 1.089
O4' C1' 1.439 1.437
C3' O3' 1.435 1.429
C3' C2' 1.512 1.548
C3' H3' 1.092 1.091
O3' HO3' 0.949 0.967
C2' C1' 1.517 1.542
C2' H2' 1.089 1.090
C2' H2'' 1.090 1.091
C1' N9 1.479 1.464
C1' H1' 1.091 1.090
N9 C8 1.356 1.365
N9 C4 1.370 1.368
C8 N7 1.293 1.301
C8 H8 1.087 1.080
N7 C5 1.399 1.354
C5 C6 1.421 1.415
C5 C4 1.384 1.400
C6 O6 1.232 1.219
C6 N1 1.391 1.352
N1 C2 1.381 1.363
N1 H1 1.008 0.970
C2 N2 1.332 1.372
C2 N3 1.331 1.314
N2 CA 1.495 1.464
N2 H2 1.011 0.970
N3 C4 1.344 1.338
CA CB 1.528 1.531
CA CJ 1.517 1.507
CA HA 1.079 1.090
CB OB 1.425 1.429
CB HB1 1.081 1.090
CB HB2 1.078 1.090
OB HB 0.956 0.968
CJ CO 1.394 1.382
CJ CO' 1.398 1.382
CO CM 1.410 1.382
CO HO 1.080 1.080
CO' CM' 1.401 1.382
CO' HO' 1.083 1.079
CM CP 1.391 1.381
CM HM 1.076 1.080
CM' CP 1.390 1.383
CM' HM' 1.074 1.080
CP HP 1.080 1.080

Bond Angles for GSR

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 120.1 109.5
OP1 P OP3 108.5 109.4
OP1 P O5' 108.0 109.5
OP2 P OP3 108.1 109.4
OP2 P O5' 108.3 109.5
P OP2 HOP2 120.0 106.9
OP3 P O5' 102.4 109.5
P OP3 HOP3 108.5 106.8
P O5' C5' 120.1 106.8
O5' C5' C4' 112.0 109.5
O5' C5' H5' 108.9 109.5
O5' C5' H5'' 108.8 109.5
C4' C5' H5' 109.0 109.5
C4' C5' H5'' 109.0 109.4
C5' C4' O4' 111.0 110.8
C5' C4' C3' 111.0 110.6
C5' C4' H4' 109.0 110.6
H5' C5' H5'' 109.1 109.4
O4' C4' C3' 107.8 103.6
O4' C4' H4' 108.9 110.6
C4' O4' C1' 109.4 106.9
C3' C4' H4' 109.0 110.5
C4' C3' O3' 110.8 111.0
C4' C3' C2' 105.6 102.1
C4' C3' H3' 109.5 110.9
O4' C1' C2' 107.2 107.4
O4' C1' N9 111.4 109.9
O4' C1' H1' 108.8 109.9
O3' C3' C2' 111.2 110.9
O3' C3' H3' 110.1 110.8
C3' O3' HO3' 110.8 106.8
C2' C3' H3' 109.6 110.9
C3' C2' C1' 106.3 104.2
C3' C2' H2' 109.9 110.5
C3' C2' H2'' 110.2 110.5
C1' C2' H2' 110.2 110.5
C1' C2' H2'' 110.1 110.4
C2' C1' N9 111.6 109.9
C2' C1' H1' 108.8 109.8
H2' C2' H2'' 110.1 110.6
N9 C1' H1' 108.9 109.9
C1' N9 C8 130.5 126.2
C1' N9 C4 125.8 126.3
C8 N9 C4 103.7 107.5
N9 C8 N7 117.5 109.8
N9 C8 H8 121.2 125.1
N9 C4 C5 106.7 106.1
N9 C4 N3 125.2 134.2
N7 C8 H8 121.3 125.1
C8 N7 C5 101.7 109.3
N7 C5 C6 130.2 134.1
N7 C5 C4 110.4 107.3
C6 C5 C4 119.4 118.6
C5 C6 O6 128.5 120.8
C5 C6 N1 111.4 118.3
C5 C4 N3 128.1 119.7
O6 C6 N1 120.1 120.8
C6 N1 C2 125.0 120.3
C6 N1 H1 115.9 119.8
C2 N1 H1 119.1 119.8
N1 C2 N2 117.3 119.0
N1 C2 N3 123.7 121.9
N2 C2 N3 119.0 119.1
C2 N2 CA 118.9 120.0
C2 N2 H2 120.6 120.0
C2 N3 C4 112.4 121.1
CA N2 H2 120.5 120.0
N2 CA CB 109.5 109.4
N2 CA CJ 110.1 109.5
N2 CA HA 108.8 109.5
CB CA CJ 110.8 109.5
CB CA HA 108.6 109.4
CA CB OB 109.9 109.4
CA CB HB1 109.3 109.5
CA CB HB2 109.5 109.5
CJ CA HA 109.0 109.5
CA CJ CO 121.0 120.0
CA CJ CO' 119.5 120.0
OB CB HB1 110.2 109.5
OB CB HB2 109.0 109.5
CB OB HB 107.9 106.7
HB1 CB HB2 108.9 109.5
CO CJ CO' 119.6 120.0
CJ CO CM 119.9 120.0
CJ CO HO 119.7 120.0
CJ CO' CM' 120.2 120.0
CJ CO' HO' 119.4 120.0
CM CO HO 120.4 120.1
CO CM CP 120.4 120.0
CO CM HM 120.0 120.0
CM' CO' HO' 120.4 120.0
CO' CM' CP 120.4 120.0
CO' CM' HM' 119.8 120.0
CP CM HM 119.6 120.0
CM CP CM' 119.6 120.0
CM CP HP 120.4 120.0
CP CM' HM' 119.8 120.0
CM' CP HP 120.0 120.0

Torsion Angles for GSR

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 235.1 120.0
OP2 P OP1 O5' 124.7 239.9
OP1 P OP2 HOP2 180.0 300.0
OP3 P OP1 O5' 249.7 120.0
OP1 P OP3 HOP3 180.0 180.0
OP1 P O5' C5' 182.9 60.0
OP1 P OP2 OP3 125.1 240.0
OP1 P OP2 O5' 235.4 120.0
OP3 P OP2 O5' 110.3 240.0
OP2 P OP3 HOP3 311.7 60.0
OP2 P O5' C5' 51.4 180.0
OP1 P OP3 OP2 228.3 120.0
OP1 P OP3 O5' 114.1 240.0
OP2 P OP3 O5' 245.8 120.1
OP3 P OP2 HOP2 54.9 60.0
OP3 P O5' C5' 297.3 300.0
OP1 P O5' OP2 131.5 240.0
OP1 P O5' OP3 245.6 120.0
OP2 P O5' OP3 114.1 240.0
O5' P OP2 HOP2 304.6 180.0
O5' P OP3 HOP3 65.9 299.9
P O5' C5' C4' 175.3 180.0
P O5' C5' H5' 54.7 59.9
P O5' C5' H5'' 295.9 300.0
HOP2 OP2 P OP3 54.9 60.0
HOP2 OP2 P O5' 304.6 180.0
HOP3 OP3 P O5' 65.9 299.9
C4' C5' O5' H5' 120.6 120.1
C4' C5' O5' H5'' 239.4 240.0
O5' C5' C4' O4' 296.8 65.7
O5' C5' C4' C3' 56.7 180.0
O5' C5' C4' H4' 176.9 302.8
H5' C5' O5' H5'' 118.8 120.0
O5' C5' C4' H5' 239.4 240.0
O5' C5' C4' H5'' 120.5 120.0
H5' C5' C4' H5'' 241.0 240.0
O4' C4' C5' C3' 240.1 245.7
O4' C4' C5' H4' 120.0 123.0
C5' C4' O4' C1' 138.7 158.5
C3' C4' C5' H4' 239.9 237.2
C5' C4' C3' O3' 111.0 86.1
C5' C4' C3' C2' 231.6 204.3
C5' C4' C3' H3' 349.5 322.5
O5' C5' H5' C4' 122.5 120.0
O5' C5' H5' H5'' 241.4 240.0
C4' C5' H5' H5'' 118.9 120.0
H5' C5' C4' O4' 57.4 185.8
H5' C5' C4' C3' 177.3 300.0
H5' C5' C4' H4' 297.4 62.8
O5' C5' H5'' C4' 237.6 240.0
O5' C5' H5'' H5' 118.7 120.0
C4' C5' H5'' H5' 241.1 240.0
H5'' C5' C4' O4' 176.4 305.7
H5'' C5' C4' C3' 296.2 60.0
H5'' C5' C4' H4' 56.4 182.8
O4' C4' C5' H5' 57.4 185.8
O4' C4' C5' H5'' 176.4 305.7
C5' C4' O4' C3' 121.8 118.6
C5' C4' O4' H4' 240.0 237.1
C3' C4' O4' H4' 118.2 118.4
O4' C4' C3' O3' 232.8 204.8
O4' C4' C3' C2' 353.4 323.0
O4' C4' C3' H3' 111.3 81.2
C4' O4' C1' C2' 339.8 333.6
C4' O4' C1' N9 217.4 214.2
C4' O4' C1' H1' 97.3 93.1
C3' C4' C5' H5' 177.3 300.0
C3' C4' C5' H5'' 296.2 60.0
C5' C4' C3' O4' 238.2 241.2
C5' C4' C3' H4' 120.1 122.8
O4' C4' C3' H4' 241.9 241.5
C3' C4' O4' C1' 16.9 39.9
O3' C3' C4' C2' 239.5 241.8
O3' C3' C4' H3' 121.6 123.6
C4' C3' O3' HO3' 180.0 174.2
C2' C3' C4' H3' 242.1 241.8
C4' C3' C2' C1' 354.7 20.9
C4' C3' C2' H2' 114.0 262.2
C4' C3' C2' H2'' 235.5 139.5
H4' C4' C5' H5' 297.4 62.8
H4' C4' C5' H5'' 56.4 182.8
C5' C4' H4' O4' 121.2 123.1
C5' C4' H4' C3' 238.7 237.2
O4' C4' H4' C3' 117.4 114.1
H4' C4' O4' C1' 258.7 281.5
H4' C4' C3' O3' 350.9 323.3
H4' C4' C3' C2' 111.5 81.5
H4' C4' C3' H3' 229.4 199.7
C1' O4' C4' C3' 16.9 39.9
C1' O4' C4' H4' 258.7 281.5
C3' C2' C1' O4' 15.4 2.0
O4' C1' C2' H2' 256.4 120.7
O4' C1' C2' H2'' 134.8 243.3
C2' C1' O4' N9 122.4 119.5
C2' C1' O4' H1' 242.5 240.6
N9 C1' O4' H1' 120.1 121.1
O4' C1' N9 C8 45.0 28.2
O4' C1' N9 C4 225.4 208.3
O3' C3' C4' H4' 350.9 323.3
C4' C3' O3' C2' 117.1 112.8
C4' C3' O3' H3' 238.8 236.3
C2' C3' O3' H3' 121.6 123.6
O3' C3' C2' C1' 115.0 139.2
O3' C3' C2' H2' 234.2 20.5
O3' C3' C2' H2'' 355.7 257.8
C2' C3' C4' H4' 111.5 81.5
C4' C3' C2' O3' 239.8 241.7
C4' C3' C2' H3' 117.9 118.2
O4' C1' C2' C3' 15.4 2.0
O3' C3' C2' H3' 238.1 236.5
C2' C3' O3' HO3' 62.8 61.4
C1' C2' C3' H2' 240.8 118.7
C1' C2' C3' H2'' 119.3 241.4
C3' C2' C1' N9 137.7 121.5
C3' C2' C1' H1' 257.9 242.5
H2' C2' C3' H2'' 238.5 122.7
H3' C3' C4' H4' 229.4 199.7
C4' C3' H3' O3' 122.0 123.7
C4' C3' H3' C2' 244.6 247.3
O3' C3' H3' C2' 122.6 123.6
H3' C3' O3' HO3' 301.2 297.9
H3' C3' C2' C1' 236.9 262.7
H3' C3' C2' H2' 356.1 144.0
H3' C3' C2' H2'' 117.6 21.3
HO3' O3' C3' C2' 62.8 61.4
HO3' O3' C3' H3' 301.2 297.9
O4' C1' C2' N9 237.8 240.5
O4' C1' C2' H1' 117.5 119.5
C1' C2' C3' H3' 236.9 262.7
C3' C2' C1' H2' 119.0 241.3
C3' C2' C1' H2'' 240.6 118.7
H2' C2' C1' H2'' 121.6 237.4
N9 C1' C2' H1' 239.8 239.0
C2' C1' N9 C8 285.2 270.3
C2' C1' N9 C4 105.6 90.4
H2' C2' C3' H3' 356.1 144.0
C3' C2' H2' C1' 243.2 114.8
C3' C2' H2' H2'' 121.6 237.3
C1' C2' H2' H2'' 238.4 122.5
H2' C2' C1' N9 18.7 240.2
H2' C2' C1' H1' 138.9 1.2
H2'' C2' C3' H3' 117.6 21.3
C3' C2' H2'' C1' 117.0 245.3
C3' C2' H2'' H2' 238.6 122.7
C1' C2' H2'' H2' 121.7 237.4
H2'' C2' C1' N9 257.0 2.8
H2'' C2' C1' H1' 17.3 123.8
O4' C1' N9 C2' 119.8 117.9
O4' C1' N9 H1' 239.9 238.9
N9 C1' C2' H2' 18.7 240.2
N9 C1' C2' H2'' 257.0 2.8
C2' C1' N9 H1' 120.1 120.9
C8 N9 C1' C4 179.6 179.9
C1' N9 C8 N7 180.5 180.1
C1' N9 C8 H8 0.6 0.0
C1' N9 C4 C5 179.5 180.0
C1' N9 C4 N3 359.7 359.8
O4' C1' H1' C2' 243.5 242.1
O4' C1' H1' N9 121.6 121.1
H1' C1' C2' H2' 138.9 1.2
H1' C1' C2' H2'' 17.3 123.8
C2' C1' H1' N9 238.1 239.0
H1' C1' N9 C8 165.1 149.3
H1' C1' N9 C4 345.5 329.4
C8 N9 C1' H1' 165.1 149.3
C1' N9 C8 C4 180.4 180.1
C8 N9 C4 C5 359.8 0.1
C8 N9 C4 N3 180.0 179.9
N7 C8 N9 H8 179.9 180.1
N9 C8 N7 C5 359.9 359.9
C4 N9 C1' H1' 345.5 329.4
C1' N9 C4 C8 179.7 179.9
C4 N9 C8 N7 0.2 360.0
C4 N9 C8 H8 180.3 179.9
N7 C5 C4 N9 0.2 359.9
C6 C5 C4 N9 180.1 180.0
C5 C4 N9 N3 179.8 180.2
C2 N3 C4 N9 179.8 180.0
N7 C8 N9 C4 0.2 360.0
N9 C8 N7 H8 180.1 179.9
C8 N7 C5 C6 180.0 180.0
C8 N7 C5 C4 359.9 0.1
H8 C8 N9 C4 180.3 179.9
N9 C8 H8 N7 179.9 180.1
H8 C8 N7 C5 179.8 180.0
N9 C4 C5 N7 0.2 359.9
C5 N7 C8 H8 179.8 180.0
C6 C5 N7 C4 180.1 179.9
N7 C5 C6 O6 359.5 0.0
N7 C5 C6 N1 179.9 179.8
N7 C5 C4 N3 180.0 180.1
N9 C4 C5 C6 180.1 180.0
N7 C5 C6 C4 179.9 180.1
C6 C5 C4 N3 359.9 0.1
O6 C6 C5 N1 179.6 180.2
C5 C6 N1 C2 0.1 0.5
C5 C6 N1 H1 180.5 180.0
N9 C4 C5 N3 180.2 179.9
N7 C5 C4 C6 180.1 179.9
C4 C5 C6 O6 179.7 179.9
C4 C5 C6 N1 0.1 359.7
C2 N3 C4 C5 0.0 359.9
O6 C6 C5 C4 179.7 179.9
C5 C6 O6 N1 180.4 179.8
O6 C6 N1 C2 180.4 180.3
O6 C6 N1 H1 0.9 359.7
N1 C6 C5 C4 0.1 359.7
C5 C6 N1 O6 179.7 180.2
C2 N1 C6 H1 179.6 180.5
C6 N1 C2 N2 180.4 179.7
C6 N1 C2 N3 359.8 359.4
C6 N1 C2 H1 180.5 179.5
N2 C2 N1 N3 180.6 180.3
N1 C2 N2 CA 179.5 179.7
N1 C2 N2 H2 359.4 359.8
N1 C2 N3 C4 0.1 0.4
C6 N1 H1 C2 179.6 180.5
H1 N1 C2 N2 360.0 0.3
H1 N1 C2 N3 179.4 180.0
N2 C2 N1 H1 360.0 0.3
N1 C2 N2 N3 179.4 179.7
N2 C2 N3 C4 179.5 180.1
CA N2 C2 H2 180.0 179.9
C2 N2 CA CB 97.8 90.0
C2 N2 CA CJ 219.9 210.0
C2 N2 CA HA 339.2 330.1
N9 C4 N3 C2 179.8 180.0
C5 C4 N3 C2 0.0 359.9
N3 C2 N1 H1 179.4 180.0
N1 C2 N3 N2 180.6 180.3
N3 C2 N2 CA 0.0 360.0
N3 C2 N2 H2 180.0 180.1
CA N2 C2 N3 0.0 360.0
C2 N2 CA H2 180.0 180.1
CB CA N2 CJ 238.0 240.0
CB CA N2 HA 118.6 119.9
N2 CA CB OB 171.8 60.0
N2 CA CB HB1 50.7 300.0
N2 CA CB HB2 291.5 180.0
CJ CA N2 HA 240.6 239.9
N2 CA CJ CO 340.9 150.0
N2 CA CJ CO' 160.4 329.8
H2 N2 C2 N3 180.0 180.1
C2 N2 H2 CA 180.1 179.9
H2 N2 CA CB 277.9 269.9
H2 N2 CA CJ 39.9 29.9
H2 N2 CA HA 159.3 150.0
N9 C4 N3 C5 179.8 180.2
CB CA N2 H2 277.9 269.9
N2 CA CB CJ 121.6 120.0
N2 CA CB HA 241.3 240.0
CJ CA CB HA 119.7 120.0
CB CA CJ CO 102.2 270.0
CB CA CJ CO' 281.7 89.8
OB CB CA HB1 121.0 120.0
OB CB CA HB2 240.2 240.0
CA CB OB HB 342.6 180.0
HB1 CB CA HB2 119.2 120.0
CJ CA N2 H2 39.9 29.9
N2 CA CJ CB 238.7 240.0
N2 CA CJ HA 119.2 120.0
CB CA CJ HA 240.5 240.0
CJ CA CB OB 50.1 300.0
CJ CA CB HB1 289.1 180.0
CJ CA CB HB2 169.9 60.0
CO CJ CA CO' 180.6 180.2
CA CJ CO CM 179.7 180.0
CA CJ CO HO 359.9 360.0
CA CJ CO' CM' 180.1 179.8
CA CJ CO' HO' 359.9 0.2
HA CA N2 H2 159.3 150.0
N2 CA HA CB 119.2 119.9
N2 CA HA CJ 239.9 239.9
CB CA HA CJ 120.8 120.0
HA CA CB OB 290.5 180.0
HA CA CB HB1 169.4 60.0
HA CA CB HB2 50.2 299.9
HA CA CJ CO 221.7 30.0
HA CA CJ CO' 41.1 209.7
OB CB CA CJ 50.1 300.0
OB CB CA HA 290.5 180.0
CA CB OB HB1 239.5 240.0
CA CB OB HB2 120.1 120.0
HB1 CB OB HB2 240.6 240.0
HB1 CB CA CJ 289.1 180.0
HB1 CB CA HA 169.4 60.0
CA CB HB1 OB 120.9 120.0
CA CB HB1 HB2 240.4 240.0
OB CB HB1 HB2 119.5 120.0
HB1 CB OB HB 103.1 300.0
HB2 CB CA CJ 169.9 60.0
HB2 CB CA HA 50.2 299.9
CA CB HB2 OB 239.7 240.1
CA CB HB2 HB1 119.5 120.0
OB CB HB2 HB1 239.8 240.0
HB2 CB OB HB 222.5 60.0
HB OB CB HB1 103.1 300.0
HB OB CB HB2 222.5 60.0
CO CJ CA HA 221.7 30.0
CA CJ CO CO' 179.4 179.8
CO CJ CO' CM' 359.5 359.6
CO CJ CO' HO' 179.3 179.9
CM CO CJ HO 179.8 180.0
CJ CO CM CP 359.7 360.0
CJ CO CM HM 180.1 179.9
CO' CJ CA HA 41.1 209.7
CA CJ CO' CO 180.6 180.2
CO' CJ CO CM 0.3 0.3
CO' CJ CO HO 180.5 180.2
CM' CO' CJ HO' 180.2 179.7
CJ CO' CM' CP 0.6 0.3
CJ CO' CM' HM' 180.1 180.3
CM CO CJ CO' 0.3 0.3
CJ CO CM HO 180.2 180.0
CP CM CO HM 179.7 180.1
CO CM CP CM' 0.4 359.9
CO CM CP HP 180.4 180.0
HO CO CJ CO' 180.5 180.2
CJ CO HO CM 179.8 180.0
HO CO CM CP 179.6 180.0
HO CO CM HM 359.9 359.9
CJ CO' CM' HO' 179.8 180.3
CM CP CM' CO' 359.5 359.9
CP CM' CO' HM' 180.5 180.1
CO' CM' CP HP 179.5 179.9
CJ CO' HO' CM' 180.2 179.7
HO' CO' CM' CP 180.8 180.0
HO' CO' CM' HM' 0.2 360.0
CP CM CO HO 179.6 180.0
CO CM CP HM 180.3 179.9
CO' CM' CP CM 359.5 359.9
CM CP CM' HM' 180.0 180.0
CM' CP CM HP 180.0 180.0
HM CM CO HO 359.9 359.9
CO CM HM CP 179.7 180.1
HM CM CP CM' 180.1 180.0
HM CM CP HP 0.1 0.0
CP CM' CO' HO' 180.8 180.0
CO' CM' CP HM' 179.5 179.9
CM' CP CM HM 180.1 180.0
CM CP CM' HP 180.0 180.0
HM' CM' CO' HO' 0.2 360.0
CO' CM' HM' CP 180.5 180.1
HM' CM' CP HP 0.0 359.9
HP CP CM HM 0.1 0.0
CM CP HP CM' 180.0 180.0
HP CP CM' HM' 0.0 359.9