PDB Chemical Component GS

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GS

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.480 1.480
P S2P 2.130 2.119
P OP3 1.618 1.610
P O5' 1.615 1.610
S2P HSP2 0.951 1.345
OP3 HOP3 0.951 0.966
O5' C5' 1.416 1.428
C5' C4' 1.531 1.529
C5' H5' 1.091 1.090
C5' H5'' 1.091 1.089
C4' O4' 1.415 1.445
C4' C3' 1.527 1.550
C4' H4' 1.092 1.090
O4' C1' 1.415 1.437
C3' O3' 1.419 1.429
C3' C2' 1.522 1.548
C3' H3' 1.091 1.090
O3' HO3' 0.950 0.967
C2' C1' 1.528 1.540
C2' H2' 1.082 1.090
C2' H2'' 1.090 1.090
C1' N9 1.482 1.464
C1' H1' 1.090 1.090
N9 C8 1.373 1.365
N9 C4 1.375 1.368
C8 N7 1.303 1.301
C8 H8 1.078 1.081
N7 C5 1.391 1.356
C5 C6 1.427 1.415
C5 C4 1.373 1.399
C6 O6 1.226 1.219
C6 N1 1.393 1.351
N1 C2 1.382 1.363
N1 HN1 1.013 0.970
C2 N2 1.337 1.372
C2 N3 1.343 1.314
N2 HN21 1.010 0.969
N2 HN22 1.011 0.971
N3 C4 1.362 1.338

Bond Angles for GS

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P S2P 120.3 109.5
OP1 P OP3 107.4 109.4
OP1 P O5' 107.9 109.5
S2P P OP3 108.5 109.5
S2P P O5' 107.7 109.5
P S2P HSP2 120.3 100.0
OP3 P O5' 103.8 109.5
P OP3 HOP3 107.4 106.8
P O5' C5' 121.3 106.8
O5' C5' C4' 110.3 109.5
O5' C5' H5' 109.9 109.4
O5' C5' H5'' 109.6 109.5
C4' C5' H5' 108.6 109.5
C4' C5' H5'' 109.3 109.4
C5' C4' O4' 110.7 110.8
C5' C4' C3' 113.9 110.7
C5' C4' H4' 109.4 110.5
H5' C5' H5'' 109.2 109.5
O4' C4' C3' 105.4 103.6
O4' C4' H4' 108.6 110.5
C4' O4' C1' 108.2 106.9
C3' C4' H4' 108.7 110.6
C4' C3' O3' 111.4 111.0
C4' C3' C2' 99.6 102.1
C4' C3' H3' 109.9 110.9
O4' C1' C2' 106.6 107.4
O4' C1' N9 110.7 109.9
O4' C1' H1' 108.9 109.8
O3' C3' C2' 111.8 110.9
O3' C3' H3' 112.8 110.8
C3' O3' HO3' 111.3 106.8
C2' C3' H3' 110.6 110.9
C3' C2' C1' 104.9 104.2
C3' C2' H2' 110.9 110.5
C3' C2' H2'' 110.2 110.5
C1' C2' H2' 111.7 110.5
C1' C2' H2'' 108.7 110.5
C2' C1' N9 111.5 109.9
C2' C1' H1' 109.2 109.9
H2' C2' H2'' 110.3 110.5
N9 C1' H1' 109.8 109.9
C1' N9 C8 129.3 126.2
C1' N9 C4 125.8 126.3
C8 N9 C4 105.0 107.5
N9 C8 N7 114.2 109.8
N9 C8 H8 123.5 125.1
N9 C4 C5 106.3 106.1
N9 C4 N3 126.5 134.2
N7 C8 H8 122.3 125.0
C8 N7 C5 103.7 109.3
N7 C5 C6 129.8 134.1
N7 C5 C4 110.5 107.3
C6 C5 C4 119.6 118.6
C5 C6 O6 127.9 120.8
C5 C6 N1 112.3 118.3
C5 C4 N3 127.2 119.7
O6 C6 N1 119.8 120.8
C6 N1 C2 124.6 120.3
C6 N1 HN1 116.3 119.8
C2 N1 HN1 119.1 119.9
N1 C2 N2 117.2 119.0
N1 C2 N3 123.1 121.9
N2 C2 N3 119.6 119.0
C2 N2 HN21 119.8 120.0
C2 N2 HN22 120.0 120.0
C2 N3 C4 113.1 121.1
HN21 N2 HN22 120.2 120.0

Torsion Angles for GS

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
S2P P OP1 OP3 124.7 120.0
S2P P OP1 O5' 236.0 240.0
OP1 P S2P HSP2 180.0 180.0
OP3 P OP1 O5' 111.4 120.0
OP1 P OP3 HOP3 180.0 60.0
OP1 P O5' C5' 33.6 300.0
OP1 P S2P OP3 235.9 240.0
OP1 P S2P O5' 124.1 120.1
OP3 P S2P O5' 248.2 240.0
S2P P OP3 HOP3 48.5 300.0
S2P P O5' C5' 164.9 60.0
OP1 P OP3 S2P 131.5 120.0
OP1 P OP3 O5' 245.9 240.0
S2P P OP3 O5' 114.4 120.0
OP3 P S2P HSP2 304.1 300.0
OP3 P O5' C5' 279.8 180.0
OP1 P O5' S2P 228.8 239.9
OP1 P O5' OP3 113.8 119.9
S2P P O5' OP3 245.0 240.0
O5' P S2P HSP2 55.9 60.0
O5' P OP3 HOP3 294.1 180.0
P O5' C5' C4' 169.7 180.0
P O5' C5' H5' 50.1 60.0
P O5' C5' H5'' 290.1 300.0
HSP2 S2P P OP3 304.1 300.0
HSP2 S2P P O5' 55.9 60.0
HOP3 OP3 P O5' 294.1 180.0
C4' C5' O5' H5' 119.7 120.0
C4' C5' O5' H5'' 239.6 240.0
O5' C5' C4' O4' 309.1 65.7
O5' C5' C4' C3' 67.6 180.0
O5' C5' C4' H4' 189.5 302.8
H5' C5' O5' H5'' 119.9 120.0
O5' C5' C4' H5' 239.6 240.0
O5' C5' C4' H5'' 120.6 120.1
H5' C5' C4' H5'' 241.0 240.0
O4' C4' C5' C3' 241.5 245.7
O4' C4' C5' H4' 119.6 122.9
C5' C4' O4' C1' 158.4 158.5
C3' C4' C5' H4' 238.1 237.2
C5' C4' C3' O3' 81.6 86.1
C5' C4' C3' C2' 199.7 204.3
C5' C4' C3' H3' 315.8 322.5
O5' C5' H5' C4' 120.7 120.0
O5' C5' H5' H5'' 239.8 240.0
C4' C5' H5' H5'' 119.1 120.0
H5' C5' C4' O4' 69.5 185.7
H5' C5' C4' C3' 188.0 300.0
H5' C5' C4' H4' 309.9 62.8
O5' C5' H5'' C4' 239.0 239.9
O5' C5' H5'' H5' 120.4 120.0
C4' C5' H5'' H5' 241.3 240.0
H5'' C5' C4' O4' 188.5 305.7
H5'' C5' C4' C3' 307.0 60.0
H5'' C5' C4' H4' 68.9 182.8
O4' C4' C5' H5' 69.5 185.7
O4' C4' C5' H5'' 188.5 305.7
C5' C4' O4' C3' 123.5 118.7
C5' C4' O4' H4' 239.9 237.1
C3' C4' O4' H4' 116.4 118.4
O4' C4' C3' O3' 203.0 204.9
O4' C4' C3' C2' 321.2 323.1
O4' C4' C3' H3' 77.3 81.3
C4' O4' C1' C2' 344.7 333.7
C4' O4' C1' N9 223.2 214.1
C4' O4' C1' H1' 102.4 93.1
C3' C4' C5' H5' 188.0 300.0
C3' C4' C5' H5'' 307.0 60.0
C5' C4' C3' O4' 238.5 241.2
C5' C4' C3' H4' 122.3 122.8
O4' C4' C3' H4' 243.7 241.6
C3' C4' O4' C1' 34.9 39.8
O3' C3' C4' C2' 241.9 241.7
O3' C3' C4' H3' 125.7 123.6
C4' C3' O3' HO3' 180.0 174.2
C2' C3' C4' H3' 243.9 241.8
C4' C3' C2' C1' 28.7 20.9
C4' C3' C2' H2' 149.4 262.2
C4' C3' C2' H2'' 271.8 139.5
H4' C4' C5' H5' 309.9 62.8
H4' C4' C5' H5'' 68.9 182.8
C5' C4' H4' O4' 120.8 123.0
C5' C4' H4' C3' 235.1 237.1
O4' C4' H4' C3' 114.2 114.1
H4' C4' O4' C1' 278.5 281.4
H4' C4' C3' O3' 319.3 323.3
H4' C4' C3' C2' 77.4 81.5
H4' C4' C3' H3' 193.6 199.7
C1' O4' C4' C3' 34.9 39.8
C1' O4' C4' H4' 278.5 281.4
C3' C2' C1' O4' 350.0 1.9
O4' C1' C2' H2' 229.9 120.6
O4' C1' C2' H2'' 107.9 243.3
C2' C1' O4' N9 121.5 119.6
C2' C1' O4' H1' 242.3 240.6
N9 C1' O4' H1' 120.8 121.0
O4' C1' N9 C8 28.9 28.3
O4' C1' N9 C4 208.9 208.2
O3' C3' C4' H4' 319.3 323.3
C4' C3' O3' C2' 110.5 112.8
C4' C3' O3' H3' 235.8 236.3
C2' C3' O3' H3' 125.4 123.6
O3' C3' C2' C1' 146.5 139.2
O3' C3' C2' H2' 267.1 20.4
O3' C3' C2' H2'' 29.6 257.8
C2' C3' C4' H4' 77.4 81.5
C4' C3' C2' O3' 242.2 241.7
C4' C3' C2' H3' 115.7 118.2
O4' C1' C2' C3' 350.0 1.9
O3' C3' C2' H3' 233.4 236.5
C2' C3' O3' HO3' 69.5 61.4
C1' C2' C3' H2' 239.3 118.7
C1' C2' C3' H2'' 116.8 241.3
C3' C2' C1' N9 111.0 121.5
C3' C2' C1' H1' 232.5 242.5
H2' C2' C3' H2'' 237.5 122.6
H3' C3' C4' H4' 193.6 199.7
C4' C3' H3' O3' 124.9 123.7
C4' C3' H3' C2' 251.0 247.3
O3' C3' H3' C2' 126.1 123.6
H3' C3' O3' HO3' 304.2 297.9
H3' C3' C2' C1' 273.0 262.7
H3' C3' C2' H2' 33.7 144.0
H3' C3' C2' H2'' 156.2 21.4
HO3' O3' C3' C2' 69.5 61.4
HO3' O3' C3' H3' 304.2 297.9
O4' C1' C2' N9 239.0 240.4
O4' C1' C2' H1' 117.5 119.4
C1' C2' C3' H3' 273.0 262.7
C3' C2' C1' H2' 120.2 241.3
C3' C2' C1' H2'' 242.1 118.7
H2' C2' C1' H2'' 121.9 237.3
N9 C1' C2' H1' 238.5 239.0
C2' C1' N9 C8 270.4 270.3
C2' C1' N9 C4 90.3 90.2
H2' C2' C3' H3' 33.7 144.0
C3' C2' H2' C1' 243.4 114.8
C3' C2' H2' H2'' 122.4 237.4
C1' C2' H2' H2'' 239.0 122.6
H2' C2' C1' N9 350.8 240.2
H2' C2' C1' H1' 112.4 1.2
H2'' C2' C3' H3' 156.2 21.4
C3' C2' H2'' C1' 114.5 245.2
C3' C2' H2'' H2' 237.2 122.6
C1' C2' H2'' H2' 122.7 237.4
H2'' C2' C1' N9 228.9 2.8
H2'' C2' C1' H1' 350.4 123.8
O4' C1' N9 C2' 118.6 118.0
O4' C1' N9 H1' 239.8 239.0
N9 C1' C2' H2' 350.8 240.2
N9 C1' C2' H2'' 228.9 2.8
C2' C1' N9 H1' 121.2 121.0
C8 N9 C1' C4 180.0 180.1
C1' N9 C8 N7 185.1 180.0
C1' N9 C8 H8 4.4 0.0
C1' N9 C4 C5 174.5 180.0
C1' N9 C4 N3 354.1 0.1
O4' C1' H1' C2' 243.9 242.1
O4' C1' H1' N9 121.3 121.0
H1' C1' C2' H2' 112.4 1.2
H1' C1' C2' H2'' 350.4 123.8
C2' C1' H1' N9 237.4 239.0
H1' C1' N9 C8 149.2 149.3
H1' C1' N9 C4 329.1 329.2
C8 N9 C1' H1' 149.2 149.3
C1' N9 C8 C4 180.0 180.0
C8 N9 C4 C5 354.5 359.9
C8 N9 C4 N3 174.1 180.0
N7 C8 N9 H8 180.7 180.0
N9 C8 N7 C5 357.6 0.0
C4 N9 C1' H1' 329.1 329.2
C1' N9 C4 C8 180.0 180.0
C4 N9 C8 N7 5.1 0.0
C4 N9 C8 H8 184.5 180.0
N7 C5 C4 N9 4.4 0.1
C6 C5 C4 N9 180.8 180.0
C5 C4 N9 N3 180.4 179.9
C2 N3 C4 N9 181.2 179.9
N7 C8 N9 C4 5.1 0.0
N9 C8 N7 H8 179.4 180.0
C8 N7 C5 C6 182.8 180.0
C8 N7 C5 C4 358.7 360.0
H8 C8 N9 C4 184.5 180.0
N9 C8 H8 N7 180.7 180.0
H8 C8 N7 C5 178.2 180.0
N9 C4 C5 N7 4.4 0.1
C5 N7 C8 H8 178.2 180.0
C6 C5 N7 C4 184.1 180.1
N7 C5 C6 O6 354.2 359.9
N7 C5 C6 N1 173.4 179.7
N7 C5 C4 N3 184.8 180.0
N9 C4 C5 C6 180.8 180.0
N7 C5 C6 C4 175.6 179.9
C6 C5 C4 N3 1.2 359.9
O6 C6 C5 N1 180.8 180.2
C5 C6 N1 C2 1.6 0.5
C5 C6 N1 HN1 182.2 180.0
N9 C4 C5 N3 179.6 180.1
N7 C5 C4 C6 183.6 180.1
C4 C5 C6 O6 178.6 180.0
C4 C5 C6 N1 357.8 359.8
C2 N3 C4 C5 0.7 0.0
O6 C6 C5 C4 178.6 180.0
C5 C6 O6 N1 179.2 179.8
O6 C6 N1 C2 180.9 180.3
O6 C6 N1 HN1 1.5 359.8
N1 C6 C5 C4 357.8 359.8
C5 C6 N1 O6 180.7 180.2
C2 N1 C6 HN1 179.4 180.5
C6 N1 C2 N2 181.0 179.7
C6 N1 C2 N3 0.3 359.5
C6 N1 C2 HN1 180.6 179.5
N2 C2 N1 N3 180.8 180.3
N1 C2 N2 HN21 179.9 179.8
N1 C2 N2 HN22 1.2 359.4
N1 C2 N3 C4 358.6 0.3
C6 N1 HN1 C2 179.5 180.5
HN1 N1 C2 N2 0.4 0.2
HN1 N1 C2 N3 179.7 179.9
N2 C2 N1 HN1 0.4 0.2
N1 C2 N2 N3 179.3 179.7
N2 C2 N3 C4 177.8 180.0
HN21 N2 C2 HN22 178.7 180.3
N9 C4 N3 C2 181.2 179.9
C5 C4 N3 C2 0.7 0.0
N3 C2 N1 HN1 179.7 179.9
N1 C2 N3 N2 180.8 180.3
N3 C2 N2 HN21 0.6 0.0
N3 C2 N2 HN22 182.0 179.7
HN21 N2 C2 N3 0.6 0.0
C2 N2 HN21 HN22 181.3 179.7
HN22 N2 C2 N3 182.0 179.7
C2 N2 HN22 HN21 178.7 180.3
N9 C4 N3 C5 180.5 179.9