PDB Chemical Component GRT

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GRT

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N11 N10 1.347 1.124
N10 N9 1.346 1.125
N9 C8 1.466 1.464
C1 C2 1.396 1.382
C1 C6 1.395 1.383
C2 C3 1.401 1.382
C8 C12 1.503 1.507
C8 C7 1.538 1.531
C6 C5 1.395 1.382
C18 C17 1.529 1.530
C19 C17 1.538 1.529
C17 C16 1.534 1.531
C12 O13 1.230 1.213
C12 N14 1.335 1.348
C3 C7 1.398 1.507
C3 C4 1.398 1.382
N14 C15 1.457 1.465
C5 C4 1.394 1.382
C16 C15 1.526 1.529
C15 C25 1.517 1.507
C25 O26 1.235 1.213
C25 N27 1.328 1.347
N27 C28 1.457 1.465
C28 C33 1.492 1.507
O34 C33 1.232 1.212
C33 N35 1.326 1.348
C40 C39 1.384 1.382
C40 C41 1.386 1.383
C44 N45 1.450 1.469
C44 C41 1.393 1.507
C39 C38 1.411 1.382
C41 C42 1.400 1.382
N35 C36 1.459 1.465
C51 S48 1.784 1.814
C36 C46 1.549 1.530
C36 C37 1.567 1.530
C38 C37 1.398 1.507
C38 C43 1.403 1.382
C42 C43 1.397 1.382
C46 C47 1.555 1.530
C47 S48 1.825 1.815
S48 O49 1.523 1.421
S48 O50 1.508 1.421
C4 H1 1.080 1.080
C5 H2 1.080 1.079
C6 H3 1.080 1.080
C7 H4 1.100 1.090
C7 H5 1.100 1.090
C8 H6 1.100 1.090
C15 H7 1.100 1.090
C17 H8 1.100 1.090
C28 H9 1.100 1.090
C28 H10 1.100 1.090
C39 H11 1.080 1.080
C40 H12 1.080 1.079
C44 H13 1.100 1.091
C44 H14 1.100 1.090
N45 H15 1.000 1.009
N45 H16 1.000 1.010
C42 H18 1.080 1.080
C43 H19 1.080 1.080
C37 H20 1.100 1.090
C37 H21 1.100 1.090
C36 H22 1.100 1.091
C46 H23 1.100 1.090
C46 H24 1.100 1.090
C47 H25 1.099 1.090
C47 H26 1.100 1.089
C51 H27 1.100 1.090
C51 H28 1.100 1.090
C51 H29 1.100 1.090
N35 H30 1.000 0.970
N27 H31 1.000 0.971
C16 H32 1.100 1.090
C16 H33 1.100 1.090
C19 H34 1.100 1.090
C19 H35 1.099 1.090
C19 H36 1.100 1.090
C18 H37 1.100 1.090
C18 H38 1.101 1.090
C18 H39 1.100 1.090
N14 H40 1.000 0.970
C1 H42 1.080 1.080
C2 H43 1.080 1.080

Bond Angles for GRT

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N9 C8 H6 111.5 109.5
C2 C1 H42 120.3 120.0
C1 C2 H43 119.5 120.0
C1 C6 H3 120.1 120.0
C8 C12 O13 119.7 120.0
C8 C12 N14 115.8 120.0
C12 C8 H6 111.0 109.5
C8 C7 H4 108.4 109.4
C8 C7 H5 108.4 109.5
C6 C5 H2 119.7 120.0
C18 C17 H8 108.8 109.4
C19 C17 H8 108.7 109.5
C16 C17 H8 108.7 109.4
C17 C16 H32 109.3 109.4
C17 C16 H33 109.3 109.4
C12 N14 H40 120.3 120.1
C3 C7 H4 108.4 109.5
C3 C7 H5 108.4 109.5
C3 C4 H1 120.0 120.0
N14 C15 H7 110.9 109.5
C5 C4 H1 120.0 120.0
C16 C15 H7 109.9 109.5
C15 C25 O26 120.7 120.0
C15 C25 N27 114.5 120.0
C25 C15 H7 110.1 109.4
C25 N27 H31 119.2 120.0
N27 C28 H9 110.5 109.5
N27 C28 H10 110.4 109.4
C28 C33 N35 111.7 120.0
C33 C28 H9 110.4 109.5
C33 C28 H10 110.5 109.5
C33 N35 H30 118.5 120.0
C40 C39 C38 121.4 120.0
C40 C39 H11 119.3 120.0
C40 C41 C42 119.3 120.0
C41 C40 H12 119.7 120.0
N45 C44 H13 108.4 109.5
N45 C44 H14 108.5 109.5
C44 N45 H15 109.5 111.0
C44 N45 H16 109.5 111.0
C44 C41 C42 122.5 120.0
C39 C38 C37 125.7 120.0
C39 C38 C43 117.3 120.0
C38 C39 H11 119.3 120.0
C41 C42 C43 120.0 120.0
C41 C42 H18 120.0 120.0
N35 C36 H22 109.5 109.5
C36 C46 C47 111.0 109.5
C46 C36 H22 108.3 109.5
C36 C46 H23 109.1 109.5
C36 C46 H24 109.1 109.5
C36 C37 H20 108.8 109.5
C36 C37 H21 108.8 109.5
C38 C37 H20 108.8 109.5
C38 C37 H21 108.9 109.5
C38 C43 H19 119.3 120.0
C43 C42 H18 120.0 120.1
C42 C43 H19 119.3 120.0
C46 C47 S48 115.0 109.5
C47 C46 H23 109.1 109.5
C47 C46 H24 109.1 109.5
C46 C47 H25 108.1 109.5
C46 C47 H26 108.1 109.5
C47 S48 O49 108.7 108.6
C47 S48 O50 109.2 108.5
S48 C47 H25 108.1 109.5
S48 C47 H26 108.1 109.4
O49 S48 O50 106.5 119.3
H4 C7 H5 109.5 109.4
H9 C28 H10 109.5 109.5
H13 C44 H14 109.5 109.4
H15 N45 H16 109.5 111.0
H20 C37 H21 109.5 109.5
H23 C46 H24 109.5 109.5
H25 C47 H26 109.5 109.5
H27 C51 H28 109.4 109.4
H27 C51 H29 109.5 109.4
H28 C51 H29 109.5 109.5
H32 C16 H33 109.5 109.4
H34 C19 H35 109.4 109.5
H34 C19 H36 109.5 109.4
H35 C19 H36 109.5 109.5
H37 C18 H38 109.5 109.5
H37 C18 H39 109.5 109.4
H38 C18 H39 109.4 109.4

Torsion Angles for GRT

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N10 N9 C8 H6 15.7 305.1
C12 C8 N9 H6 238.1 239.9
N9 C8 C7 H4 51.4 55.0
N9 C8 C7 H5 170.2 175.0
C2 C1 C6 H3 180.2 179.8
C1 C6 C5 H2 180.1 180.1
C2 C3 C7 H4 299.4 150.0
C2 C3 C7 H5 180.6 30.0
C2 C3 C4 H1 179.0 179.9
N9 C8 C12 H6 122.2 120.1
C12 C8 C7 H4 295.7 295.0
C12 C8 C7 H5 54.4 55.0
C8 C12 N14 H40 353.3 5.1
C3 C7 C8 H4 239.4 240.0
C3 C7 C8 H5 120.6 120.0
H4 C7 C8 H5 241.2 240.1
C6 C5 C4 H1 180.3 180.1
C19 C17 C18 H8 119.0 240.0
C16 C17 C18 H8 241.2 119.9
C18 C17 C16 H32 291.4 65.9
C18 C17 C16 H33 51.2 306.0
C18 C17 C19 H8 240.9 120.0
C16 C17 C19 H8 119.4 240.0
C19 C17 C16 H32 53.2 305.9
C19 C17 C16 H33 173.1 185.9
C18 C17 C16 H8 118.8 240.1
C19 C17 C16 H8 240.6 120.0
C17 C16 C15 H7 51.0 306.5
H32 C16 C17 H33 240.2 119.9
C8 C12 O13 N14 183.8 179.9
O13 C12 C8 H6 192.4 220.0
O13 C12 N14 H40 177.0 185.0
C8 C12 N14 O13 176.3 180.1
N14 C12 C8 H6 15.8 39.9
C12 N14 C15 H7 35.9 328.4
C8 C7 C3 H4 120.6 120.0
C8 C7 C3 H5 239.4 240.0
C7 C3 C4 H1 0.7 359.9
H4 C7 C3 H5 118.8 120.0
C5 C4 C3 H1 180.0 179.8
C8 C12 N14 C15 173.3 185.1
C16 C15 N14 H7 124.0 120.1
C25 C15 N14 H7 242.5 240.1
C3 C4 C5 H1 180.0 180.2
N14 C15 C16 H7 235.5 240.0
C25 C15 C16 H7 121.4 120.0
N14 C15 C25 H7 118.1 120.0
C16 C15 C25 H7 238.7 240.0
C15 C25 N27 H31 2.2 4.7
C15 C25 O26 N27 175.2 180.0
O26 C25 C15 H7 204.8 219.6
O26 C25 N27 H31 177.7 184.8
C15 C25 N27 O26 184.5 180.0
N27 C25 C15 H7 20.5 39.6
C25 N27 C28 H9 343.8 60.0
C25 N27 C28 H10 105.0 300.0
C15 C25 N27 C28 182.2 184.8
C33 C28 N27 H9 240.6 120.0
C33 C28 N27 H10 119.4 240.0
H9 C28 N27 H10 238.7 120.0
N27 C28 C33 H9 119.4 240.0
N27 C28 C33 H10 240.6 120.0
C28 C33 N35 H30 356.3 360.0
H9 C28 C33 H10 121.2 239.9
O34 C33 C28 H9 198.0 120.0
O34 C33 C28 H10 76.7 240.1
O34 C33 N35 H30 176.1 179.9
N35 C33 C28 H9 17.7 300.0
N35 C33 C28 H10 256.5 60.0
C33 N35 C36 H22 36.7 35.0
C40 C39 C38 C37 179.9 179.7
C40 C39 C38 C43 359.9 0.1
C38 C39 C40 H11 180.0 180.2
C41 C40 C39 C38 0.2 359.9
C41 C40 C39 H11 180.2 179.8
C44 C41 C40 C42 178.5 180.1
C40 C41 C42 C43 359.2 0.0
C40 C41 C42 H18 179.2 180.0
N45 C44 C41 C42 309.7 270.0
H13 C44 N45 H14 241.2 119.9
H15 N45 C44 H16 240.0 236.1
C40 C41 C44 C42 181.5 179.9
C44 C41 C40 H12 358.8 0.1
C44 C41 C42 C43 180.8 180.0
C44 C41 C42 H18 0.8 360.0
C40 C39 C38 H11 180.0 179.8
C39 C38 C37 H20 240.5 210.1
C39 C38 C37 H21 121.2 330.1
C39 C38 C43 H19 179.6 179.9
C42 C41 C40 H12 180.2 180.0
C43 C42 C41 H18 180.0 180.0
C41 C42 C43 H19 180.9 180.0
C28 C33 N35 C36 176.3 180.0
C46 C36 N35 H22 242.6 240.0
N35 C36 C46 H23 74.5 185.0
N35 C36 C46 H24 194.1 305.0
N35 C36 C37 H20 43.8 175.0
N35 C36 C37 H21 163.0 55.0
C51 S48 C47 H25 182.0 60.0
C51 S48 C47 H26 63.6 299.9
N35 C36 C46 H22 118.2 120.0
C46 C36 C37 H20 283.6 55.0
C46 C36 C37 H21 42.9 295.0
C36 C46 C47 S48 154.2 180.0
C47 C46 C36 H23 239.8 240.0
C47 C46 C36 H24 120.2 120.0
C36 C46 C47 H25 275.0 300.0
C36 C46 C47 H26 33.4 60.1
H23 C46 C36 H24 240.5 240.0
C38 C37 C36 H20 239.6 120.0
C38 C37 C36 H21 120.4 240.0
H20 C37 C36 H21 240.7 120.0
C39 C38 C37 C43 179.9 180.4
C37 C38 C39 H11 359.9 359.9
C36 C37 C38 H20 120.4 240.0
C36 C37 C38 H21 239.6 120.0
C37 C38 C43 H19 359.5 0.3
H20 C37 C38 H21 119.3 240.0
C39 C38 C43 C37 180.1 179.6
C43 C38 C39 H11 179.9 180.3
C38 C43 C42 H18 180.9 180.0
C42 C43 C38 H19 180.0 180.0
C39 C38 C43 C42 359.6 359.9
C41 C42 C43 H18 180.0 180.0
C38 C43 C42 H19 180.0 180.0
C47 C46 C36 H22 196.1 305.0
C36 C46 C47 H23 120.2 120.0
C36 C46 C47 H24 239.8 240.0
C46 C47 S48 O49 181.5 294.5
C46 C47 S48 O50 65.7 65.5
S48 C47 C46 H25 239.2 240.0
S48 C47 C46 H26 120.8 119.9
H23 C46 C47 H24 119.6 120.0
H25 C47 C46 H26 241.6 240.0
S48 C47 C46 H23 34.0 60.0
S48 C47 C46 H24 274.4 300.0
C46 C47 S48 H25 120.8 120.0
C46 C47 S48 H26 239.2 240.0
O49 S48 C47 O50 115.8 228.9
H25 C47 S48 H26 118.4 120.0
C47 S48 O49 O50 242.4 125.0
O49 S48 C47 H25 60.7 174.5
O49 S48 C47 H26 302.3 54.5
C47 S48 O50 O49 117.2 235.0
O50 S48 C47 H25 304.9 305.6
O50 S48 C47 H26 186.5 185.5
H2 C5 C4 H1 0.3 0.0
H3 C6 C5 H2 0.1 0.0
C8 C7 H4 H5 118.1 120.0
C3 C7 H4 H5 241.9 240.0
C8 C7 H5 H4 241.9 240.1
C3 C7 H5 H4 118.1 120.1
H6 C8 C12 O13 192.4 220.0
H6 C8 C12 N14 15.8 39.9
H6 C8 C7 H4 176.6 175.0
H6 C8 C7 H5 295.4 295.0
H7 C15 C25 O26 204.8 219.6
H7 C15 C25 N27 20.5 39.6
H8 C17 C16 H32 172.6 185.8
H8 C17 C16 H33 292.4 65.9
N27 C28 H9 H10 121.8 240.0
H9 C28 C33 N35 17.7 300.0
C33 C28 H9 H10 238.2 120.1
N27 C28 H10 H9 238.2 120.0
H10 C28 C33 N35 256.5 60.0
C33 C28 H10 H9 121.8 239.9
C40 C39 H11 C38 180.0 180.2
H11 C39 C38 C37 359.9 359.9
H11 C39 C38 C43 179.9 180.3
H12 C40 C39 C38 180.2 179.9
H12 C40 C39 H11 0.2 359.8
H12 C40 C41 C42 180.2 180.0
N45 C44 H13 H14 118.2 240.0
H13 C44 N45 H15 300.6 60.0
H13 C44 N45 H16 60.6 183.9
H13 C44 C41 C42 189.1 30.1
N45 C44 H14 H13 241.8 120.0
H14 C44 N45 H15 59.4 300.1
H14 C44 N45 H16 179.4 64.0
H14 C44 C41 C42 70.3 150.0
H15 N45 C44 H13 300.6 60.0
H15 N45 C44 H14 59.4 300.1
C44 N45 H15 H16 120.0 123.9
H16 N45 C44 H13 60.6 183.9
H16 N45 C44 H14 179.4 64.0
C44 N45 H16 H15 240.0 236.1
C41 C42 H18 C43 180.0 180.0
H18 C42 C43 H19 0.9 0.0
H19 C43 C42 H18 0.9 0.0
C36 C37 H20 H21 118.9 240.0
C38 C37 H20 H21 241.1 120.0
C36 C37 H21 H20 241.1 120.0
C38 C37 H21 H20 118.8 240.0
H22 C36 C46 C47 196.1 305.0
H22 C36 C46 H23 316.3 65.0
H22 C36 C46 H24 75.9 185.0
H22 C36 C37 H20 161.7 295.0
H22 C36 C37 H21 281.0 175.0
C36 C46 H23 C47 238.6 240.0
H23 C46 C36 H22 316.3 65.0
C36 C46 H23 H24 119.3 120.0
H23 C46 C47 S48 34.0 60.0
C47 C46 H23 H24 240.7 240.0
H23 C46 C47 H25 154.8 180.0
H23 C46 C47 H26 273.2 300.0
C36 C46 H24 C47 121.4 120.0
H24 C46 C36 H22 75.9 185.0
C36 C46 H24 H23 240.7 240.0
H24 C46 C47 S48 274.4 300.0
C47 C46 H24 H23 119.3 120.0
H24 C46 C47 H25 35.2 60.0
H24 C46 C47 H26 153.6 180.0
C46 C47 H25 S48 235.0 240.0
H25 C47 C46 H23 154.8 180.0
H25 C47 C46 H24 35.2 60.0
C46 C47 H25 H26 117.5 120.0
H25 C47 S48 O49 60.7 174.5
H25 C47 S48 O50 304.9 305.6
S48 C47 H25 H26 242.5 240.0
C46 C47 H26 S48 125.0 120.0
H26 C47 C46 H23 273.2 300.0
H26 C47 C46 H24 153.6 180.0
C46 C47 H26 H25 242.5 240.0
H26 C47 S48 O49 302.3 54.5
H26 C47 S48 O50 186.5 185.5
S48 C47 H26 H25 117.5 120.0
H28 C51 H27 H29 120.0 120.0
H27 C51 H28 H29 240.0 240.1
H27 C51 H29 H28 120.0 119.9
H30 N35 C36 H22 216.7 215.0
H31 N27 C28 H9 163.8 240.0
H31 N27 C28 H10 285.1 120.0
H32 C16 C17 H8 172.6 185.8
C17 C16 H32 H33 119.7 240.1
H32 C16 C15 H7 291.0 66.5
H33 C16 C17 H8 292.4 65.9
C17 C16 H33 H32 240.3 119.9
H33 C16 C15 H7 171.1 186.5
H34 C19 C17 H8 299.1 183.6
H35 C19 H34 H36 120.0 120.0
H35 C19 C17 H8 59.1 303.7
H34 C19 H35 H36 240.0 240.1
H36 C19 C17 H8 179.1 63.7
H34 C19 H36 H35 120.0 120.0
H37 C18 C17 H8 61.0 300.0
H38 C18 H37 H39 120.0 119.9
H38 C18 C17 H8 181.0 60.1
H37 C18 H38 H39 240.0 240.0
H39 C18 C17 H8 301.0 180.0
H37 C18 H39 H38 120.0 120.0
H40 N14 C15 H7 216.0 148.4
H42 C1 C2 H43 359.1 359.8
H42 C1 C6 H3 0.2 0.0
H43 C2 C1 H42 359.1 359.8