PDB Chemical Component GRF

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GRF

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C3	O3	1.410	1.430
C3	C2	1.550	1.547
C3	C4	1.498	1.544
C3	H3	1.115	1.090
O3	HO3	0.951	0.967
C2	O2	1.389	1.430
C2	C1	1.555	1.545
C2	H2	1.114	1.090
O2	HO2	0.950	0.966
C1	O4	1.420	1.445
C1	N19	1.501	1.469
C1	H1	1.115	1.090
O4	C4	1.478	1.444
C4	C5	1.492	1.530
C4	H4	1.115	1.090
C5	O5	1.433	1.429
C5	H51	1.115	1.090
C5	H52	1.115	1.090
O5	P15	1.576	1.610
N19	H191	1.021	1.009
N19	H192	1.019	1.009
P15	O16	1.452	1.610
P15	O17	1.459	1.480
P15	O18	1.613	1.610
O16	H16	0.950	0.967
O18	H18	0.950	0.967

Bond Angles for GRF

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O3	C3	C2	113.7	110.5
O3	C3	C4	115.9	110.6
O3	C3	H3	100.3	110.4
C3	O3	HO3	113.7	106.8
C2	C3	C4	104.5	104.1
C2	C3	H3	112.6	110.5
C3	C2	O2	111.2	110.5
C3	C2	C1	103.7	104.0
C3	C2	H2	114.3	110.5
C4	C3	H3	110.1	110.5
C3	C4	O4	102.9	104.8
C3	C4	C5	115.8	110.5
C3	C4	H4	110.3	110.4
O2	C2	C1	115.2	110.8
O2	C2	H2	102.6	110.4
C2	O2	HO2	111.2	106.8
C1	C2	H2	110.2	110.5
C2	C1	O4	104.4	104.9
C2	C1	N19	116.5	110.4
C2	C1	H1	107.6	110.4
O4	C1	N19	107.2	110.4
O4	C1	H1	116.8	110.4
C1	O4	C4	113.9	105.3
N19	C1	H1	104.8	110.3
C1	N19	H191	116.5	106.7
C1	N19	H192	109.7	106.7
O4	C4	C5	111.1	110.4
O4	C4	H4	115.1	110.4
C5	C4	H4	102.0	110.3
C4	C5	O5	111.1	109.5
C4	C5	H51	111.7	109.5
C4	C5	H52	111.6	109.4
O5	C5	H51	111.6	109.5
O5	C5	H52	111.6	109.5
C5	O5	P15	127.4	106.8
H51	C5	H52	98.7	109.5
O5	P15	O16	109.8	109.5
O5	P15	O17	111.6	109.5
O5	P15	O18	102.6	109.5
H191	N19	H192	109.7	106.7
O16	P15	O17	111.4	109.5
O16	P15	O18	105.9	109.5
P15	O16	H16	109.7	106.8
O17	P15	O18	115.0	109.4
P15	O18	H18	102.6	106.8

Torsion Angles for GRF

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C3	O3	C4	238.9	245.2
C2	C3	O3	H3	120.4	122.6
O3	C3	C2	O2	34.2	360.0
O3	C3	C2	C1	158.6	118.8
O3	C3	C2	H2	278.6	237.4
C4	C3	O3	H3	241.5	237.4
O3	C3	C4	O4	203.2	217.2
O3	C3	C4	C5	81.8	98.3
O3	C3	C4	H4	326.6	336.0
O3	C3	C2	C4	127.3	118.7
O3	C3	C2	H3	246.8	237.4
C2	C3	O3	HO3	180.0	65.3
C4	C3	C2	H3	119.5	118.7
C2	C3	C4	O4	329.1	336.0
C2	C3	C4	C5	207.7	217.0
C2	C3	C4	H4	92.5	94.8
O2	C2	C3	C1	235.6	241.1
O2	C2	C3	H2	115.6	122.6
C3	C2	O2	HO2	180.0	180.0
C1	C2	C3	H2	240.0	241.4
C3	C2	C1	O4	340.9	23.9
C3	C2	C1	N19	98.9	142.7
C3	C2	C1	H1	216.2	265.0
O3	C3	C4	C2	234.1	241.3
O3	C3	C4	H3	112.9	122.5
C4	C3	O3	HO3	301.1	180.0
C2	C3	C4	H3	238.8	241.3
C4	C3	C2	O2	267.0	241.2
C4	C3	C2	C1	31.4	0.1
C4	C3	C2	H2	151.4	118.7
C1	O4	C4	C3	20.0	40.5
O4	C4	C3	C5	121.4	118.9
O4	C4	C3	H4	236.6	241.2
C5	C4	C3	H4	115.2	122.3
C3	C4	C5	O5	38.9	181.9
C3	C4	C5	H51	164.1	301.9
C3	C4	C5	H52	273.6	61.9
O3	C3	H3	C2	121.2	122.6
O3	C3	H3	C4	237.4	237.4
H3	C3	O3	HO3	59.6	302.6
C2	C3	H3	C4	116.2	114.7
H3	C3	C2	O2	147.4	122.5
H3	C3	C2	C1	271.8	241.4
H3	C3	C2	H2	31.8	360.0
H3	C3	C4	O4	90.3	94.7
H3	C3	C4	C5	328.9	335.8
H3	C3	C4	H4	213.7	213.5
HO3	O3	C3	C2	180.0	65.3
HO3	O3	C3	C4	301.1	180.0
HO3	O3	C3	H3	59.6	302.6
O2	C2	C3	C4	267.0	241.2
O2	C2	C3	H3	147.4	122.5
C3	C2	O2	C1	117.6	114.7
C3	C2	O2	H2	237.4	237.4
C1	C2	O2	H2	119.8	122.7
O2	C2	C1	O4	102.6	142.6
O2	C2	C1	N19	220.7	261.4
O2	C2	C1	H1	337.9	23.7
C1	C2	C3	C4	31.4	0.1
C1	C2	C3	H3	271.8	241.4
C3	C2	C1	O2	238.2	241.3
C3	C2	C1	H2	122.7	118.6
O2	C2	C1	H2	244.5	237.3
C1	C2	O2	HO2	62.3	65.3
O4	C1	C2	N19	242.0	241.2
O4	C1	C2	H1	124.7	118.9
C2	C1	O4	C4	359.8	319.5
N19	C1	C2	H1	242.7	237.8
C2	C1	N19	H191	180.0	181.6
C2	C1	N19	H192	54.7	295.4
H2	C2	C3	C4	151.4	118.7
H2	C2	C3	H3	31.8	360.0
C3	C2	H2	O2	120.5	122.6
C3	C2	H2	C1	243.7	245.5
O2	C2	H2	C1	123.2	122.9
H2	C2	O2	HO2	302.5	302.6
H2	C2	C1	O4	218.1	265.3
H2	C2	C1	N19	336.2	24.1
H2	C2	C1	H1	93.4	146.4
HO2	O2	C2	C1	62.3	65.3
HO2	O2	C2	H2	302.5	302.6
C3	C4	O4	C1	20.0	40.5
O4	C1	C2	H2	218.1	265.3
C2	C1	O4	N19	124.2	118.8
C2	C1	O4	H1	241.3	241.1
N19	C1	O4	H1	117.2	122.2
O4	C1	N19	H191	296.5	297.1
O4	C1	N19	H192	171.2	50.8
C1	O4	C4	C5	144.6	159.5
C1	O4	C4	H4	259.9	281.7
N19	C1	C2	H2	336.2	24.1
C2	C1	N19	O4	243.6	244.5
C2	C1	N19	H1	118.8	122.3
O4	C1	N19	H1	235.3	237.7
N19	C1	O4	C4	235.7	200.7
H191	N19	C1	H192	125.3	246.2
H1	C1	C2	H2	93.4	146.4
C2	C1	H1	O4	116.9	115.5
C2	C1	H1	N19	235.4	237.8
O4	C1	H1	N19	118.5	122.2
H1	C1	O4	C4	118.5	78.4
H1	C1	N19	H191	61.2	59.3
H1	C1	N19	H192	295.9	173.1
O4	C4	C3	H3	90.3	94.7
C3	C4	O4	C5	235.4	241.0
C3	C4	O4	H4	120.1	118.8
C4	O4	C1	N19	235.7	200.7
C4	O4	C1	H1	118.5	78.4
C5	C4	O4	H4	244.7	237.8
O4	C4	C5	O5	281.9	66.4
O4	C4	C5	H51	47.2	186.5
O4	C4	C5	H52	156.7	306.5
C5	C4	C3	H3	328.9	335.8
C3	C4	C5	O4	116.9	115.5
C3	C4	C5	H4	240.2	237.7
O4	C4	C5	H4	123.2	122.3
O5	C5	C4	H51	234.7	240.0
O5	C5	C4	H52	125.3	119.9
C4	C5	O5	P15	180.0	180.0
H51	C5	C4	H52	250.5	240.0
H4	C4	C3	H3	213.7	213.5
C3	C4	H4	O4	244.0	244.6
C3	C4	H4	C5	123.6	122.4
O4	C4	H4	C5	239.6	237.7
H4	C4	C5	O5	158.7	304.2
H4	C4	C5	H51	284.0	64.2
H4	C4	C5	H52	33.5	184.2
O5	C5	C4	H4	158.7	304.2
C4	C5	O5	H51	125.3	120.0
C4	C5	O5	H52	234.7	240.1
H51	C5	O5	H52	109.4	120.1
C5	O5	P15	O16	168.2	65.0
C5	O5	P15	O17	44.1	305.0
C5	O5	P15	O18	280.4	185.0
H51	C5	C4	H4	284.0	64.2
C4	C5	H51	O5	235.0	240.0
C4	C5	H51	H52	117.5	120.0
O5	C5	H51	H52	242.6	240.0
H51	C5	O5	P15	54.7	60.0
H52	C5	C4	H4	33.5	184.2
C4	C5	H52	O5	125.0	119.9
C4	C5	H52	H51	242.4	240.0
O5	C5	H52	H51	117.5	120.1
H52	C5	O5	P15	305.3	300.0
P15	O5	C5	H51	54.7	60.0
P15	O5	C5	H52	305.3	300.0
O16	P15	O5	O17	124.1	120.0
O16	P15	O5	O18	247.7	239.9
O5	P15	O16	H16	180.0	60.0
O17	P15	O5	O18	123.7	119.9
O5	P15	O18	H18	179.9	180.0
H191	N19	C1	H1	61.2	59.3
C1	N19	H191	H192	234.7	113.8
H192	N19	C1	H1	295.9	173.1
C1	N19	H192	H191	129.1	246.2
O5	P15	O16	O17	235.8	240.0
O5	P15	O16	O18	110.1	120.0
O17	P15	O16	O18	234.3	240.0
O16	P15	O18	H18	295.1	300.0
O5	P15	O17	O16	123.2	120.0
O5	P15	O17	O18	243.6	240.0
O16	P15	O17	O18	120.5	120.0
O17	P15	O16	H16	304.2	180.0
O17	P15	O18	H18	58.5	60.1
O5	P15	O18	O16	244.9	240.0
O5	P15	O18	O17	121.4	120.0
O16	P15	O18	O17	236.5	240.0
O18	P15	O16	H16	69.9	300.0
H16	O16	P15	O17	304.2	180.0
H16	O16	P15	O18	69.9	300.0