PDB Chemical Component GPS

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GPS

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O11 C1 1.391 1.208
C1 CA1 1.488 1.507
C1 O12 1.250 1.343
N1 CA1 1.535 1.469
N1 HN1 1.000 1.009
N1 HN1A 1.000 1.009
CA2 C2 1.575 1.507
C2 N3 1.331 1.348
C2 O2 1.224 1.213
CD1 N2 1.359 1.348
N2 CA2 1.474 1.465
N2 HN2 1.000 0.970
O31 C3 1.262 1.209
CA3 C3 1.492 1.507
C3 O32 1.329 1.343
N3 CA3 1.470 1.465
N3 HN3 1.000 0.970
O5 CA5 1.469 1.429
O5 HO5 0.950 0.966
O12 HO12 0.950 0.966
O32 HO32 0.950 0.967
CA1 CB1 1.579 1.530
CA1 HA1 1.100 1.090
CA2 CB2 1.563 1.529
CA2 HA2 1.101 1.089
CA3 HA3 1.100 1.090
CA3 HA3A 1.100 1.091
CB4 CA4 1.518 1.505
CA4 SG2 1.724 1.814
CA4 CA5 1.552 1.526
CA4 HA4 1.100 1.090
CA5 CB5 1.508 1.505
CA5 HA5 1.100 1.090
CB1 CG1 1.538 1.530
CB1 HB1 1.100 1.090
CB1 HB1A 1.100 1.091
SG2 CB2 1.754 1.814
CB2 HB2 1.100 1.090
CB2 HB2A 1.100 1.090
CG4 CB4 1.434 1.381
CB4 CH4 1.402 1.393
CH5 CB5 1.366 1.394
CB5 CG5 1.432 1.381
CG1 CD1 1.507 1.507
OE1 CD1 1.255 1.213
CD4 CG4 1.368 1.383
CD4 CE4 1.405 1.382
CD4 HD4 1.080 1.081
CG5 CD5 1.393 1.383
CE5 CD5 1.414 1.384
CD5 HD5 1.080 1.079
CE4 CZ4 1.399 1.381
CE4 HE4 1.080 1.081
CZ5 CE5 1.405 1.381
CE5 HE5 1.080 1.080
CG1 HG1 1.100 1.090
CG1 HG1A 1.100 1.089
CG4 HG4 1.080 1.081
CG5 HG5 1.080 1.080
CZ4 CH4 1.394 1.391
CH4 CH5 1.422 1.482
CH5 CZ5 1.423 1.391
CZ4 HZ4 1.080 1.080
CZ5 HZ5 1.080 1.081

Bond Angles for GPS

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O11 C1 CA1 118.8 120.0
O11 C1 O12 111.6 120.0
O12 C1 CA1 128.7 120.0
C1 CA1 N1 109.1 109.5
C1 CA1 CB1 112.8 109.5
C1 CA1 HA1 106.0 109.4
C1 O12 HO12 109.5 117.0
CA1 N1 HN1 109.5 111.0
CA1 N1 HN1A 109.5 111.0
N1 CA1 CB1 104.3 109.5
N1 CA1 HA1 114.3 109.5
HN1 N1 HN1A 109.5 111.0
O2 C2 N3 129.4 120.0
C2 N3 CA3 119.9 120.0
C2 N3 HN3 120.1 120.0
CD1 N2 HN2 121.2 120.0
CA2 N2 HN2 121.2 120.0
N2 CA2 CB2 104.6 109.5
N2 CA2 HA2 114.2 109.5
O31 C3 O32 122.8 120.0
C3 O32 HO32 109.5 116.9
CA3 N3 HN3 120.0 120.0
N3 CA3 HA3 108.6 109.5
N3 CA3 HA3A 108.7 109.4
CA5 O5 HO5 109.5 114.0
O5 CA5 CA4 112.0 109.2
O5 CA5 CB5 105.8 109.2
O5 CA5 HA5 111.0 109.2
CB1 CA1 HA1 110.6 109.5
CA1 CB1 CG1 102.6 109.5
CA1 CB1 HB1 111.9 109.5
CA1 CB1 HB1A 111.8 109.5
CB2 CA2 HA2 113.6 109.5
CA2 CB2 HB2 107.7 109.5
CA2 CB2 HB2A 107.7 109.5
HA3 CA3 HA3A 110.3 109.4
CB4 CA4 SG2 110.4 109.2
CB4 CA4 HA4 114.3 109.2
CA5 CA4 SG2 114.0 109.2
SG2 CA4 HA4 104.0 109.2
CA4 SG2 CB2 111.3 103.0
CA5 CA4 HA4 110.7 109.2
CA4 CA5 CB5 111.4 110.8
CA4 CA5 HA5 105.3 109.2
CB5 CA5 HA5 111.6 109.2
CA5 CB5 CG5 118.9 120.3
CG1 CB1 HB1 111.8 109.5
CG1 CB1 HB1A 111.9 109.5
CB1 CG1 CD1 112.0 109.5
CB1 CG1 HG1 108.6 109.5
CB1 CG1 HG1A 108.7 109.5
HB1 CB1 HB1A 107.0 109.5
SG2 CB2 HB2 107.7 109.5
SG2 CB2 HB2A 107.7 109.5
HB2 CB2 HB2A 111.2 109.5
CG4 CB4 CH4 121.9 119.7
CB4 CH4 CH5 117.6 119.1
CB5 CG5 CD5 118.9 120.1
CB5 CG5 HG5 120.6 119.9
CE4 CD4 CG4 122.1 120.4
CG4 CD4 HD4 118.9 119.8
CD4 CG4 HG4 121.4 120.0
CE4 CD4 HD4 119.0 119.8
CD4 CE4 CZ4 119.9 120.1
CD4 CE4 HE4 120.0 120.0
CG5 CD5 HD5 119.6 119.9
CE5 CD5 HD5 119.7 119.8
CZ4 CE4 HE4 120.1 119.9
CE4 CZ4 CH4 120.2 119.6
CE4 CZ4 HZ4 119.9 120.2
CZ5 CE5 HE5 120.3 120.0
HG1 CG1 HG1A 110.3 109.5
CH4 CH5 CZ5 121.0 120.8
CH5 CZ5 HZ5 120.1 120.1

Torsion Angles for GPS

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O12 C1 O11 CA1 189.9 180.2
O11 C1 CA1 N1 340.2 340.2
O11 C1 CA1 CB1 95.6 100.3
O11 C1 CA1 HA1 216.8 220.2
O11 C1 O12 HO12 0.0 359.7
O11 C1 CA1 O12 191.8 180.2
CA1 C1 O12 HO12 191.2 179.9
C1 CA1 N1 HN1 180.0 296.1
C1 CA1 N1 HN1A 300.0 60.0
N1 CA1 C1 CB1 244.6 240.0
N1 CA1 C1 HA1 123.4 120.0
CB1 CA1 C1 HA1 238.9 240.0
C1 CA1 CB1 CG1 68.7 175.0
C1 CA1 CB1 HB1 188.7 295.0
C1 CA1 CB1 HB1A 308.7 55.0
O11 C1 O12 CA1 168.8 179.8
O12 C1 CA1 N1 148.4 160.0
O12 C1 CA1 CB1 263.8 280.1
O12 C1 CA1 HA1 24.9 40.0
C1 CA1 N1 CB1 120.8 120.0
C1 CA1 N1 HA1 241.6 240.1
HN1 N1 CA1 HN1A 240.0 236.1
CB1 CA1 N1 HA1 120.8 120.0
N1 CA1 CB1 CG1 186.9 295.0
N1 CA1 CB1 HB1 306.9 55.0
N1 CA1 CB1 HB1A 66.9 175.0
CA1 N1 HN1 HN1A 120.0 123.9
HN1 N1 CA1 CB1 59.2 176.0
HN1 N1 CA1 HA1 298.3 56.0
CA1 N1 HN1A HN1 239.9 236.0
HN1A N1 CA1 CB1 179.2 300.0
HN1A N1 CA1 HA1 58.4 180.0
CA2 C2 N3 CA3 181.0 180.0
CA2 C2 N3 HN3 1.0 360.0
CA3 N3 C2 HN3 180.0 180.0
C2 N3 CA3 HA3 127.4 59.9
C2 N3 CA3 HA3A 7.4 300.0
O2 C2 N3 CA3 25.6 0.0
O2 C2 N3 HN3 205.6 180.1
CA2 N2 CD1 HN2 180.0 180.0
CD1 N2 CA2 HA2 336.9 34.9
CD1 N2 CA2 HN2 180.0 180.0
CB2 CA2 N2 HA2 124.8 120.0
N2 CA2 CB2 HB2 52.9 60.0
N2 CA2 CB2 HB2A 172.9 180.0
HN2 N2 CA2 CB2 281.7 335.0
HN2 N2 CA2 HA2 156.9 215.0
O31 C3 O32 HO32 0.0 0.0
C2 N3 CA3 C3 247.4 180.0
CA3 C3 O32 HO32 179.1 180.0
C2 N3 CA3 HN3 180.0 180.0
HA3 CA3 N3 HA3A 120.0 119.9
C2 N3 HN3 CA3 180.0 180.0
HN3 N3 CA3 HA3 307.4 239.9
HN3 N3 CA3 HA3A 187.4 120.0
O5 CA5 CA4 SG2 174.0 169.9
O5 CA5 CA4 HA4 57.2 50.5
CA4 CA5 O5 CB5 121.5 121.3
CA4 CA5 O5 HA5 242.7 240.6
CB5 CA5 O5 HA5 121.2 119.3
O5 CA5 CB5 CG5 265.0 265.0
HO5 O5 CA5 CA4 180.0 180.0
HO5 O5 CA5 CB5 58.5 58.7
HO5 O5 CA5 HA5 297.4 299.4
HO12 O12 C1 CA1 191.2 179.9
C1 CA1 CB1 N1 241.7 240.0
C1 CA1 CB1 HA1 118.5 119.9
CB1 CA1 N1 HN1 59.2 176.0
CB1 CA1 N1 HN1A 179.2 300.0
N1 CA1 CB1 HA1 236.7 240.0
CG1 CB1 CA1 HB1 240.0 240.0
CG1 CB1 CA1 HB1A 120.0 120.0
CA1 CB1 CG1 CD1 173.8 180.0
CA1 CB1 CG1 HG1 293.8 300.0
CA1 CB1 CG1 HG1A 53.8 60.0
HB1 CB1 CA1 HB1A 240.0 240.0
C1 CA1 HA1 N1 120.1 120.0
C1 CA1 HA1 CB1 237.4 240.0
HA1 CA1 N1 HN1 298.3 56.0
HA1 CA1 N1 HN1A 58.4 180.0
N1 CA1 HA1 CB1 117.3 120.0
HA1 CA1 CB1 CG1 310.2 55.1
HA1 CA1 CB1 HB1 70.2 175.0
HA1 CA1 CB1 HB1A 190.2 295.0
CB2 CA2 N2 HN2 281.7 335.0
N2 CA2 CB2 HA2 234.8 240.0
CA4 SG2 CB2 CA2 290.3 180.0
SG2 CB2 CA2 HB2 240.0 240.0
SG2 CB2 CA2 HB2A 120.0 120.0
HB2 CB2 CA2 HB2A 240.0 240.0
HA2 CA2 N2 HN2 156.9 215.0
N2 CA2 HA2 CB2 119.9 120.0
HA2 CA2 CB2 HB2 178.2 180.0
HA2 CA2 CB2 HB2A 298.2 300.0
HA3 CA3 N3 HN3 307.4 239.9
N3 CA3 HA3 HA3A 241.0 240.1
HA3A CA3 N3 HN3 187.4 120.0
N3 CA3 HA3A HA3 119.0 119.9
CA5 CA4 CB4 SG2 237.4 239.6
SG2 CA4 CB4 HA4 243.2 240.6
CB4 CA4 SG2 CB2 222.0 63.7
CA5 CA4 CB4 HA4 120.6 120.3
CB4 CA4 CA5 CB5 52.4 50.6
CB4 CA4 CA5 HA5 173.5 170.9
CB4 CA4 SG2 HA4 123.0 119.3
CA5 CA4 SG2 HA4 239.4 240.7
SG2 CA4 CA5 CB5 292.3 290.2
SG2 CA4 CA5 HA5 53.3 50.5
CA4 SG2 CB2 HB2 170.3 60.0
CA4 SG2 CB2 HB2A 50.3 300.0
CA4 CA5 O5 HO5 180.0 180.0
O5 CA5 CA4 CB5 241.8 239.7
O5 CA5 CA4 HA5 120.7 119.4
CB4 CA4 CA5 SG2 120.2 120.4
CB4 CA4 CA5 HA4 237.0 239.7
SG2 CA4 CA5 HA4 116.9 119.3
CA5 CA4 SG2 CB2 338.3 185.0
CB5 CA5 CA4 HA5 238.9 239.7
CA4 CA5 CB5 CG5 143.1 144.7
CB4 CA4 HA4 SG2 239.5 240.6
CA5 CA4 HA4 SG2 122.9 119.3
HA4 CA4 SG2 CB2 98.9 304.3
HA4 CA4 CA5 CB5 175.4 170.9
HA4 CA4 CA5 HA5 296.5 291.2
CB5 CA5 O5 HO5 58.5 58.7
O5 CA5 CB5 CA4 121.9 120.3
O5 CA5 CB5 HA5 239.2 240.7
CB5 CA5 CA4 SG2 292.3 290.2
CB5 CA5 CA4 HA4 175.4 170.9
CA4 CA5 CB5 HA5 117.3 120.3
CA5 CB5 CG5 CD5 178.3 179.1
CA5 CB5 CG5 HG5 358.3 359.1
HA5 CA5 O5 HO5 297.4 299.4
O5 CA5 HA5 CA4 238.6 240.6
O5 CA5 HA5 CB5 117.7 119.3
HA5 CA5 CA4 SG2 53.3 50.5
HA5 CA5 CA4 HA4 296.5 291.2
CA4 CA5 HA5 CB5 239.1 238.7
HA5 CA5 CB5 CG5 25.8 24.3
CG1 CB1 CA1 HA1 310.2 55.1
CA1 CB1 CG1 HB1 120.0 120.0
CA1 CB1 CG1 HB1A 240.0 240.0
HB1 CB1 CG1 HB1A 120.0 120.0
HG1 CG1 CB1 HG1A 240.0 240.0
HB1 CB1 CA1 HA1 70.2 175.0
CA1 CB1 HB1 CG1 245.6 240.0
CA1 CB1 HB1 HB1A 122.8 120.0
CG1 CB1 HB1 HB1A 237.2 240.0
HB1 CB1 CG1 CD1 53.8 60.0
HB1 CB1 CG1 HG1 173.7 180.0
HB1 CB1 CG1 HG1A 293.8 300.0
HB1A CB1 CA1 HA1 190.2 295.0
CA1 CB1 HB1A CG1 114.4 120.0
CA1 CB1 HB1A HB1 237.2 240.0
CG1 CB1 HB1A HB1 122.8 120.0
HB1A CB1 CG1 CD1 293.8 300.0
HB1A CB1 CG1 HG1 53.7 60.0
HB1A CB1 CG1 HG1A 173.8 180.0
SG2 CB2 CA2 HA2 58.2 60.0
CA2 CB2 SG2 HB2 120.0 120.0
CA2 CB2 SG2 HB2A 240.0 240.0
CB2 SG2 CA4 HA4 98.9 304.3
HB2 CB2 SG2 HB2A 120.0 120.0
HB2 CB2 CA2 HA2 178.2 180.0
CA2 CB2 HB2 HB2A 117.8 120.0
SG2 CB2 HB2 HB2A 242.2 240.0
HB2A CB2 CA2 HA2 298.2 300.0
CA2 CB2 HB2A HB2 242.2 239.9
SG2 CB2 HB2A HB2 117.8 120.0
CG4 CB4 CA4 HA4 24.7 24.2
CG4 CB4 CH4 CH5 178.1 181.6
CH4 CB4 CA4 SG2 88.2 84.6
CH4 CB4 CA4 HA4 205.0 204.0
CE4 CZ4 CH4 CB4 357.4 359.3
CB4 CH4 CH5 CZ5 201.4 197.1
CH5 CB5 CA5 HA5 201.9 204.2
CB4 CH4 CH5 CB5 21.9 16.9
CH5 CB5 CG5 HG5 182.2 179.3
CG5 CB5 CA5 HA5 25.8 24.3
CB5 CG5 CD5 HD5 179.4 180.0
CG1 CD1 N2 HN2 12.9 359.9
CD1 CG1 CB1 HB1 53.8 60.0
CD1 CG1 CB1 HB1A 293.8 300.0
CB1 CG1 CD1 HG1 120.0 120.0
CB1 CG1 CD1 HG1A 240.0 240.0
OE1 CD1 N2 HN2 202.5 180.0
CB1 CG1 CD1 OE1 350.0 360.0
CD4 CG4 CB4 CH4 1.3 359.4
CE4 CD4 CG4 HD4 180.0 180.1
CG4 CD4 CE4 CZ4 359.5 0.4
CG4 CD4 CE4 HE4 179.5 180.4
CG4 CD4 CE4 HD4 180.0 179.9
CE4 CD4 CG4 HG4 178.6 179.9
CZ4 CE4 CD4 HE4 180.0 180.0
CD4 CE4 CZ4 CH4 2.5 0.0
CD4 CE4 CZ4 HZ4 182.6 180.0
CE4 CD4 HD4 CG4 180.0 179.9
HD4 CD4 CG4 HG4 358.6 359.9
HD4 CD4 CE4 CZ4 179.5 180.4
HD4 CD4 CE4 HE4 359.5 0.4
CB5 CG5 CD5 HG5 180.0 180.0
CE5 CD5 CG5 HD5 180.0 180.0
CB5 CG5 CD5 CE5 359.4 360.0
CG5 CD5 CE5 HD5 180.0 180.0
CZ4 CE4 CD4 CG4 359.5 0.4
CZ4 CE4 CD4 HD4 179.5 180.4
CD4 CE4 CZ4 HE4 180.0 180.0
HE4 CE4 CD4 CG4 179.5 180.4
HE4 CE4 CD4 HD4 359.5 0.4
CD4 CE4 HE4 CZ4 180.0 180.0
HE4 CE4 CZ4 CH4 182.6 180.0
HE4 CE4 CZ4 HZ4 2.6 360.0
CZ5 CE5 CD5 HD5 179.7 180.4
HE5 CE5 CD5 HD5 359.6 0.5
HG1 CG1 CB1 HB1 173.7 180.0
HG1 CG1 CB1 HB1A 53.7 60.0
CB1 CG1 HG1 CD1 238.0 240.0
CB1 CG1 HG1 HG1A 119.0 120.0
HG1A CG1 CB1 HB1 293.8 300.0
HG1A CG1 CB1 HB1A 173.8 180.0
CB1 CG1 HG1A CD1 122.0 120.0
CB1 CG1 HG1A HG1 241.0 240.0
HG4 CG4 CB4 CH4 181.3 179.4
HG4 CG4 CD4 HD4 358.6 359.9
CB5 CG5 HG5 CD5 180.0 180.0
HG5 CG5 CD5 HD5 359.4 359.9
CH4 CZ4 CE4 HE4 182.6 180.0
CE4 CZ4 CH4 HZ4 180.0 180.0
CZ4 CH4 CH5 CZ5 18.6 17.6
CE4 CZ4 CH4 CH5 180.2 178.7
CH4 CH5 CZ5 HZ5 2.3 359.1
CH5 CZ5 CE5 HE5 179.9 179.9
HZ4 CZ4 CE4 HE4 2.6 360.0
CE4 CZ4 HZ4 CH4 180.0 180.0
HZ5 CZ5 CE5 HE5 359.9 359.8