PDB Chemical Component GPP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GPP

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	O1	1.418	1.428
C1	C2	1.509	1.507
C1	H11	1.115	1.089
C1	H12	1.115	1.090
O1	PA	1.634	1.610
C2	C3	1.343	1.310
C2	H2	1.103	1.080
C3	C4	1.524	1.506
C3	C5	1.538	1.507
C4	H41	1.115	1.090
C4	H42	1.115	1.090
C4	H43	1.116	1.090
C5	C6	1.526	1.530
C5	H51	1.115	1.090
C5	H52	1.116	1.089
C6	C7	1.507	1.507
C6	H61	1.115	1.089
C6	H62	1.114	1.090
C7	C8	1.334	1.309
C7	H7	1.104	1.080
C8	C9	1.525	1.507
C8	C10	1.543	1.507
C9	H91	1.115	1.090
C9	H92	1.115	1.089
C9	H93	1.115	1.091
C10	H101	1.114	1.090
C10	H102	1.116	1.090
C10	H103	1.115	1.090
PA	O1A	1.647	1.480
PA	O2A	1.578	1.609
PA	O3A	1.560	1.609
O2A	HOA2	0.950	0.967
O3A	PB	1.559	1.610
PB	O1B	1.610	1.481
PB	O2B	1.588	1.610
PB	O3B	1.594	1.608
O2B	HOB2	0.950	0.967
O3B	HOB3	0.950	0.967

Bond Angles for GPP

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O1	C1	C2	113.5	109.5
O1	C1	H11	110.8	109.5
O1	C1	H12	110.7	109.5
C1	O1	PA	129.9	106.8
C2	C1	H11	110.7	109.5
C2	C1	H12	110.7	109.4
C1	C2	C3	121.4	120.0
C1	C2	H2	125.3	120.0
H11	C1	H12	99.6	109.4
O1	PA	O1A	107.9	109.4
O1	PA	O2A	117.9	109.5
O1	PA	O3A	106.4	109.5
C3	C2	H2	113.4	120.0
C2	C3	C4	116.2	120.0
C2	C3	C5	120.3	120.0
C4	C3	C5	123.4	120.0
C3	C4	H41	116.3	109.5
C3	C4	H42	109.8	109.5
C3	C4	H43	109.8	109.5
C3	C5	C6	124.4	109.5
C3	C5	H51	106.9	109.4
C3	C5	H52	106.9	109.6
H41	C4	H42	109.8	109.4
H41	C4	H43	109.7	109.4
H42	C4	H43	100.5	109.5
C6	C5	H51	106.9	109.4
C6	C5	H52	107.0	109.5
C5	C6	C7	110.6	109.5
C5	C6	H61	111.8	109.4
C5	C6	H62	111.8	109.5
H51	C5	H52	102.7	109.4
C7	C6	H61	111.7	109.5
C7	C6	H62	111.8	109.5
C6	C7	C8	118.0	120.0
C6	C7	H7	126.7	120.0
H61	C6	H62	98.6	109.5
C8	C7	H7	115.2	120.0
C7	C8	C9	115.1	120.0
C7	C8	C10	115.3	120.0
C9	C8	C10	129.5	120.0
C8	C9	H91	115.1	109.5
C8	C9	H92	110.1	109.5
C8	C9	H93	110.1	109.4
C8	C10	H101	115.3	109.5
C8	C10	H102	110.1	109.5
C8	C10	H103	110.0	109.5
H91	C9	H92	110.2	109.5
H91	C9	H93	110.2	109.4
H92	C9	H93	100.1	109.4
H101	C10	H102	110.1	109.4
H101	C10	H103	110.2	109.4
H102	C10	H103	100.1	109.5
O1A	PA	O2A	113.7	109.5
O1A	PA	O3A	106.5	109.5
O2A	PA	O3A	103.4	109.5
PA	O2A	HOA2	118.0	106.8
PA	O3A	PB	123.3	106.8
O3A	PB	O1B	155.3	109.5
O3A	PB	O2B	89.7	109.5
O3A	PB	O3B	104.6	109.5
O1B	PB	O2B	98.4	109.5
O1B	PB	O3B	94.6	109.5
O2B	PB	O3B	110.0	109.4
PB	O2B	HOB2	89.6	106.8
PB	O3B	HOB3	104.6	106.9

Torsion Angles for GPP

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	H11	234.7	120.0
C2	C1	O1	H12	125.2	240.0
O1	C1	C2	C3	143.8	135.4
O1	C1	C2	H2	323.7	315.4
H11	C1	O1	H12	250.5	120.0
C1	O1	PA	O1A	253.3	300.0
C1	O1	PA	O2A	23.9	60.0
C1	O1	PA	O3A	139.3	180.0
O1	C1	C2	H11	125.3	239.9
O1	C1	C2	H12	234.8	120.0
C2	C1	O1	PA	116.7	180.0
H11	C1	C2	H12	109.4	240.0
C3	C2	C1	H2	180.1	180.0
C1	C2	C3	C4	0.5	5.7
C1	C2	C3	C5	177.2	185.6
O1	C1	H11	C2	233.2	120.0
O1	C1	H11	H12	116.6	240.0
H11	C1	O1	PA	242.0	60.0
C2	C1	H11	H12	243.5	119.9
H11	C1	C2	C3	18.4	255.5
H11	C1	C2	H2	198.4	75.5
O1	C1	H12	C2	126.8	240.0
O1	C1	H12	H11	243.4	120.0
H12	C1	O1	PA	351.5	300.0
C2	C1	H12	H11	116.6	240.0
H12	C1	C2	C3	269.0	15.4
H12	C1	C2	H2	88.9	195.4
PA	O1	C1	C2	116.7	180.0
PA	O1	C1	H11	242.0	60.0
PA	O1	C1	H12	351.5	300.0
O1A	PA	O1	O2A	229.5	240.0
O1A	PA	O1	O3A	114.0	120.0
O2A	PA	O1	O3A	244.5	240.0
O1	PA	O2A	HOA2	180.1	60.0
O1	PA	O3A	PB	295.9	179.9
C3	C2	C1	H11	18.4	255.5
C3	C2	C1	H12	269.0	15.4
C1	C2	C3	H2	179.9	180.0
C4	C3	C2	C5	183.3	180.1
C2	C3	C4	H41	180.0	54.8
C2	C3	C4	H42	305.3	174.8
C2	C3	C4	H43	54.8	294.8
C2	C3	C5	C6	58.6	90.0
C2	C3	C5	H51	183.9	330.0
C2	C3	C5	H52	293.3	210.1
H2	C2	C1	H11	198.4	75.5
H2	C2	C1	H12	88.9	195.4
C1	C2	H2	C3	180.1	180.0
H2	C2	C3	C4	180.6	185.7
H2	C2	C3	C5	357.3	5.6
C4	C3	C2	H2	180.6	185.7
C2	C3	C4	C5	176.6	179.9
C4	C3	C5	C6	235.0	269.9
C4	C3	C5	H51	0.3	150.0
C4	C3	C5	H52	109.7	30.0
H41	C4	C3	H42	234.7	240.0
H41	C4	C3	H43	125.2	120.0
H42	C4	C3	H43	250.5	240.0
C5	C3	C2	H2	357.3	5.6
C2	C3	C5	C4	183.6	180.1
C5	C3	C4	H41	3.4	234.9
C5	C3	C4	H42	128.7	354.9
C5	C3	C4	H43	238.2	114.9
C6	C5	C3	H51	234.7	119.9
C6	C5	C3	H52	125.3	239.9
C3	C5	C6	C7	182.8	180.0
C3	C5	C6	H61	308.0	60.0
C3	C5	C6	H62	57.5	300.1
H51	C5	C3	H52	250.6	120.0
H41	C4	C3	C5	3.4	234.9
C3	C4	H41	H42	125.3	120.0
C3	C4	H41	H43	234.8	240.0
H42	C4	H41	H43	109.5	120.0
H42	C4	C3	C5	128.7	354.9
C3	C4	H42	H41	231.1	239.9
C3	C4	H42	H43	115.6	120.0
H41	C4	H42	H43	244.5	240.1
H43	C4	C3	C5	238.2	114.9
C3	C4	H43	H41	128.9	120.0
C3	C4	H43	H42	244.4	240.0
H41	C4	H43	H42	115.6	119.9
C3	C5	C6	H51	125.3	240.0
C3	C5	C6	H52	234.7	120.1
H51	C5	C6	H52	109.4	240.1
C7	C6	C5	H61	234.8	120.0
C7	C6	C5	H62	125.3	239.9
C5	C6	C7	C8	188.6	125.8
C5	C6	C7	H7	8.7	305.6
H61	C6	C5	H62	250.5	120.0
C3	C5	H51	C6	224.7	120.0
C3	C5	H51	H52	112.3	239.9
C6	C5	H51	H52	247.6	120.0
H51	C5	C6	C7	57.5	300.0
H51	C5	C6	H61	182.7	180.0
H51	C5	C6	H62	292.2	60.0
C3	C5	H52	C6	135.2	239.9
C3	C5	H52	H51	247.6	120.0
C6	C5	H52	H51	112.4	240.1
H52	C5	C6	C7	308.1	59.9
H52	C5	C6	H61	73.3	299.9
H52	C5	C6	H62	182.8	180.0
C7	C6	C5	H51	57.5	300.0
C7	C6	C5	H52	308.1	59.9
C5	C6	C7	H61	125.2	240.1
C5	C6	C7	H62	234.7	120.0
H61	C6	C7	H62	109.5	239.9
C8	C7	C6	H7	180.0	180.1
C6	C7	C8	C9	0.3	185.6
C6	C7	C8	C10	180.0	5.6
H61	C6	C5	H51	182.7	180.0
H61	C6	C5	H52	73.3	299.9
C5	C6	H61	C7	235.4	120.0
C5	C6	H61	H62	117.7	240.1
C7	C6	H61	H62	242.3	120.1
H61	C6	C7	C8	63.4	245.7
H61	C6	C7	H7	243.4	65.6
H62	C6	C5	H51	292.2	60.0
H62	C6	C5	H52	182.8	180.0
C5	C6	H62	C7	124.6	240.0
C5	C6	H62	H61	242.3	119.9
C7	C6	H62	H61	117.7	239.9
H62	C6	C7	C8	313.9	5.8
H62	C6	C7	H7	133.9	185.6
C8	C7	C6	H61	63.4	245.7
C8	C7	C6	H62	313.9	5.8
C6	C7	C8	H7	180.0	179.9
C9	C8	C7	C10	180.3	180.0
C7	C8	C9	H91	180.0	179.9
C7	C8	C9	H92	305.3	300.0
C7	C8	C9	H93	54.7	60.0
C7	C8	C10	H101	180.1	54.9
C7	C8	C10	H102	305.3	174.9
C7	C8	C10	H103	54.7	295.0
H7	C7	C6	H61	243.4	65.6
H7	C7	C6	H62	133.9	185.6
C6	C7	H7	C8	180.0	180.1
H7	C7	C8	C9	180.3	5.7
H7	C7	C8	C10	0.0	185.7
C9	C8	C7	H7	180.3	5.7
C7	C8	C9	C10	179.7	180.0
C9	C8	C10	H101	359.7	234.9
C9	C8	C10	H102	125.0	354.9
C9	C8	C10	H103	234.4	115.0
H91	C9	C8	H92	234.7	239.9
H91	C9	C8	H93	125.3	119.9
H92	C9	C8	H93	250.6	240.1
C10	C8	C7	H7	0.0	185.7
C7	C8	C10	C9	180.3	180.0
C10	C8	C9	H91	0.3	359.9
C10	C8	C9	H92	125.6	120.0
C10	C8	C9	H93	235.0	240.0
H101	C10	C8	H102	234.7	240.0
H101	C10	C8	H103	125.4	119.9
H102	C10	C8	H103	250.6	239.9
H91	C9	C8	C10	0.3	359.9
C8	C9	H91	H92	125.3	120.1
C8	C9	H91	H93	234.8	240.1
H92	C9	H91	H93	109.5	120.0
H92	C9	C8	C10	125.6	120.0
C8	C9	H92	H91	232.0	239.9
C8	C9	H92	H93	115.9	119.9
H91	C9	H92	H93	244.0	240.0
H93	C9	C8	C10	235.0	240.0
C8	C9	H93	H91	128.0	120.0
C8	C9	H93	H92	244.1	240.0
H91	C9	H93	H92	116.0	120.0
C8	C10	H101	H102	125.3	120.0
C8	C10	H101	H103	234.7	240.0
H102	C10	H101	H103	109.4	120.0
C8	C10	H102	H101	231.8	240.0
C8	C10	H102	H103	115.8	120.1
H101	C10	H102	H103	244.1	240.1
C8	C10	H103	H101	128.3	120.0
C8	C10	H103	H102	244.1	239.9
H101	C10	H103	H102	115.9	120.0
O1	PA	O1A	O2A	132.8	120.0
O1	PA	O1A	O3A	246.1	240.0
O2A	PA	O1A	O3A	113.3	120.0
O1A	PA	O2A	HOA2	307.9	179.9
O1A	PA	O3A	PB	180.9	60.0
O1	PA	O2A	O1A	232.2	240.0
O1	PA	O2A	O3A	117.0	120.0
O1A	PA	O2A	O3A	244.9	240.0
O2A	PA	O3A	PB	60.8	300.0
O1	PA	O3A	O1A	115.0	120.0
O1	PA	O3A	O2A	235.1	240.0
O1A	PA	O3A	O2A	120.1	120.0
O3A	PA	O2A	HOA2	63.0	300.0
PA	O3A	PB	O1B	18.5	60.0
PA	O3A	PB	O2B	128.2	180.0
PA	O3A	PB	O3B	238.8	300.0
HOA2	O2A	PA	O3A	63.0	300.0
O1B	PB	O3A	O2B	250.3	240.0
O1B	PB	O3A	O3B	139.7	120.0
O2B	PB	O3A	O3B	249.4	240.0
O3A	PB	O2B	HOB2	180.0	180.1
O3A	PB	O3B	HOB3	179.9	300.1
O3A	PB	O1B	O2B	107.9	120.0
O3A	PB	O1B	O3B	218.9	239.9
O2B	PB	O1B	O3B	111.0	119.9
O1B	PB	O2B	HOB2	336.6	300.1
O1B	PB	O3B	HOB3	15.7	180.0
O3A	PB	O2B	O1B	203.5	240.0
O3A	PB	O2B	O3B	105.4	120.1
O1B	PB	O2B	O3B	262.0	240.0
O2B	PB	O3B	HOB3	275.0	60.1
O3A	PB	O3B	O1B	164.3	120.0
O3A	PB	O3B	O2B	264.9	240.0
O1B	PB	O3B	O2B	100.6	120.0
O3B	PB	O2B	HOB2	74.6	60.0
HOB2	O2B	PB	O3B	74.6	60.0