PDB Chemical Component GPN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GPN

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C8' C7' 1.544 1.508
C8' N9 1.490 1.465
C8' H8'1 1.100 1.090
C8' H8'2 1.100 1.090
C7' O7' 1.232 1.212
C7' N4' 1.360 1.348
C5' C 1.535 1.507
C5' N4' 1.478 1.464
C5' H5'1 1.100 1.090
C5' H5'2 1.100 1.090
C O 1.231 1.209
C OXT 1.339 1.342
OXT HXT 0.950 0.967
N4' C3' 1.477 1.465
C3' C2' 1.541 1.530
C3' H3'1 1.100 1.090
C3' H3'2 1.100 1.091
C2' N 1.470 1.469
C2' H2'1 1.100 1.090
C2' H2'2 1.100 1.090
N H 1.001 1.010
N H2 1.000 1.009
N H3 1.000 1.009
N9 C8 1.374 1.365
N9 C4 1.382 1.368
C8 N7 1.303 1.301
C8 H8 1.080 1.080
N7 C5 1.393 1.356
C5 C6 1.446 1.414
C5 C4 1.385 1.399
C6 O6 1.232 1.219
C6 N1 1.400 1.352
N1 C2 1.389 1.363
N1 HN1 1.000 0.970
C2 N2 1.331 1.372
C2 N3 1.351 1.315
N2 HN21 1.000 0.969
N2 HN22 1.000 0.970
N3 C4 1.372 1.338

Bond Angles for GPN

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C7' C8' N9 115.4 109.4
C7' C8' H8'1 107.6 109.5
C7' C8' H8'2 107.6 109.5
C8' C7' O7' 117.2 120.0
C8' C7' N4' 121.3 120.0
N9 C8' H8'1 107.5 109.5
N9 C8' H8'2 107.6 109.5
C8' N9 C8 126.5 126.2
C8' N9 C4 128.7 126.3
H8'1 C8' H8'2 111.3 109.5
O7' C7' N4' 121.5 120.0
C7' N4' C5' 120.4 120.0
C7' N4' C3' 124.5 120.0
C C5' N4' 113.6 109.5
C C5' H5'1 108.1 109.5
C C5' H5'2 108.1 109.5
C5' C O 120.3 120.0
C5' C OXT 117.2 120.0
N4' C5' H5'1 108.1 109.5
N4' C5' H5'2 108.1 109.5
C5' N4' C3' 115.1 120.0
H5'1 C5' H5'2 110.8 109.4
O C OXT 122.5 120.0
C OXT HXT 109.5 117.0
N4' C3' C2' 112.9 109.5
N4' C3' H3'1 108.3 109.5
N4' C3' H3'2 108.3 109.4
C2' C3' H3'1 108.3 109.5
C2' C3' H3'2 108.3 109.5
C3' C2' N 112.2 109.4
C3' C2' H2'1 108.6 109.5
C3' C2' H2'2 108.6 109.4
H3'1 C3' H3'2 110.6 109.4
N C2' H2'1 108.6 109.5
N C2' H2'2 108.6 109.5
C2' N H 109.5 109.4
C2' N H2 109.4 109.5
C2' N H3 109.5 109.5
H2'1 C2' H2'2 110.3 109.5
H N H2 109.5 109.5
H N H3 109.5 109.5
H2 N H3 109.5 109.5
C8 N9 C4 104.7 107.4
N9 C8 N7 114.8 109.8
N9 C8 H8 122.6 125.1
N9 C4 C5 106.5 106.2
N9 C4 N3 127.6 134.1
N7 C8 H8 122.6 125.1
C8 N7 C5 104.0 109.3
N7 C5 C6 130.4 134.1
N7 C5 C4 110.0 107.2
C6 C5 C4 119.6 118.6
C5 C6 O6 128.7 120.9
C5 C6 N1 113.1 118.3
C5 C4 N3 125.9 119.7
O6 C6 N1 118.2 120.8
C6 N1 C2 123.3 120.3
C6 N1 HN1 118.4 119.8
C2 N1 HN1 118.3 119.8
N1 C2 N2 116.5 119.0
N1 C2 N3 123.7 121.9
N2 C2 N3 119.8 119.1
C2 N2 HN21 120.0 120.0
C2 N2 HN22 120.0 119.9
C2 N3 C4 114.1 121.1
HN21 N2 HN22 120.0 120.0

Torsion Angles for GPN

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N9 C8' C7' H8'1 240.0 240.0
N9 C8' C7' H8'2 120.0 120.0
C7' C8' N9 C8 215.1 265.0
C7' C8' N9 C4 39.3 84.7
H8'1 C8' C7' H8'2 240.0 240.0
O7' C7' C8' N4' 181.9 180.0
C8' C7' N4' C5' 187.0 180.0
C8' C7' N4' C3' 8.2 0.0
C7' C8' N9 H8'1 120.0 120.0
C7' C8' N9 H8'2 240.0 240.0
N9 C8' C7' O7' 69.9 0.0
N9 C8' C7' N4' 248.0 180.0
H8'1 C8' N9 H8'2 120.0 120.0
C8 N9 C8' C4 175.8 180.3
C8' N9 C8 N7 183.2 180.0
C8' N9 C8 H8 3.2 360.0
C8' N9 C4 C5 177.4 179.9
C8' N9 C4 N3 357.2 0.7
C7' C8' H8'1 N9 235.1 240.0
C7' C8' H8'1 H8'2 117.6 120.0
H8'1 C8' C7' O7' 189.9 120.0
H8'1 C8' C7' N4' 8.0 300.0
N9 C8' H8'1 H8'2 242.4 240.0
H8'1 C8' N9 C8 95.1 145.1
H8'1 C8' N9 C4 279.2 324.7
C7' C8' H8'2 N9 124.9 120.0
C7' C8' H8'2 H8'1 242.4 240.0
H8'2 C8' C7' O7' 309.9 240.0
H8'2 C8' C7' N4' 127.9 60.0
N9 C8' H8'2 H8'1 117.5 120.0
H8'2 C8' N9 C8 335.1 25.0
H8'2 C8' N9 C4 159.3 204.7
O7' C7' C8' N9 69.9 0.0
O7' C7' C8' H8'1 189.9 120.0
O7' C7' C8' H8'2 309.9 240.0
C8' C7' O7' N4' 178.1 180.0
O7' C7' N4' C5' 5.0 0.0
O7' C7' N4' C3' 186.2 180.0
N4' C7' C8' N9 248.0 180.0
N4' C7' C8' H8'1 8.0 300.0
N4' C7' C8' H8'2 127.9 60.0
C8' C7' N4' O7' 182.0 180.0
C C5' N4' C7' 251.0 90.0
C7' N4' C5' H5'1 131.0 330.0
C7' N4' C5' H5'2 11.0 210.0
C5' N4' C7' C3' 178.8 180.0
C7' N4' C3' C2' 257.7 90.0
C7' N4' C3' H3'1 17.7 210.0
C7' N4' C3' H3'2 137.7 330.0
C7' N4' C5' C 251.0 90.0
N4' C5' C H5'1 240.0 240.0
N4' C5' C H5'2 120.0 120.0
C C5' N4' C3' 69.9 270.0
H5'1 C5' C H5'2 240.0 240.0
O C C5' OXT 179.7 180.0
C5' C OXT HXT 179.6 180.0
C7' N4' C5' C3' 181.1 180.0
C C5' N4' H5'1 120.0 120.0
C C5' N4' H5'2 240.0 240.0
N4' C5' C O 272.2 360.0
N4' C5' C OXT 92.5 180.0
H5'1 C5' N4' H5'2 120.0 119.9
C5' N4' C3' C2' 78.9 270.0
C5' N4' C3' H3'1 198.8 30.0
C5' N4' C3' H3'2 318.9 150.0
C C5' H5'1 N4' 236.6 240.0
C C5' H5'1 H5'2 118.3 120.0
H5'1 C5' C O 32.2 120.0
H5'1 C5' C OXT 212.5 300.0
N4' C5' H5'1 H5'2 241.7 240.0
H5'1 C5' N4' C3' 309.9 150.0
C C5' H5'2 N4' 123.4 120.0
C C5' H5'2 H5'1 241.7 240.0
H5'2 C5' C O 152.2 240.0
H5'2 C5' C OXT 332.5 59.9
N4' C5' H5'2 H5'1 118.3 120.0
H5'2 C5' N4' C3' 189.9 30.0
O C C5' N4' 272.2 360.0
O C C5' H5'1 32.2 120.0
O C C5' H5'2 152.2 240.0
C5' C O OXT 180.4 180.0
O C OXT HXT 360.0 360.0
OXT C C5' N4' 92.5 180.0
OXT C C5' H5'1 212.5 300.0
OXT C C5' H5'2 332.5 59.9
C5' C OXT O 179.6 180.0
C7' N4' C3' C5' 178.9 180.0
C3' N4' C5' H5'1 309.9 150.0
C3' N4' C5' H5'2 189.9 30.0
C2' C3' N4' H3'1 240.0 239.9
C2' C3' N4' H3'2 120.0 120.0
N4' C3' C2' N 62.8 180.0
N4' C3' C2' H2'1 182.8 300.0
N4' C3' C2' H2'2 302.8 60.0
H3'1 C3' N4' H3'2 240.0 240.1
N4' C3' C2' H3'1 120.0 120.0
N4' C3' C2' H3'2 240.0 240.0
H3'1 C3' C2' H3'2 120.0 120.0
N C2' C3' H2'1 240.0 240.0
N C2' C3' H2'2 120.0 119.9
C3' C2' N H 180.0 180.0
C3' C2' N H2 300.0 300.0
C3' C2' N H3 60.0 60.1
H2'1 C2' C3' H2'2 240.0 239.9
N4' C3' H3'1 C2' 237.2 240.0
N4' C3' H3'1 H3'2 118.6 119.9
C2' C3' H3'1 H3'2 241.4 240.0
H3'1 C3' C2' N 302.8 59.9
H3'1 C3' C2' H2'1 62.8 179.9
H3'1 C3' C2' H2'2 182.8 300.0
N4' C3' H3'2 C2' 122.8 120.0
N4' C3' H3'2 H3'1 241.4 240.0
C2' C3' H3'2 H3'1 118.6 120.0
H3'2 C3' C2' N 182.8 299.9
H3'2 C3' C2' H2'1 302.8 60.0
H3'2 C3' C2' H2'2 62.8 180.0
N C2' C3' H3'1 302.8 59.9
N C2' C3' H3'2 182.8 299.9
C3' C2' N H2'1 120.0 120.0
C3' C2' N H2'2 240.0 240.1
H2'1 C2' N H2'2 120.0 120.1
H N C2' H2 240.0 240.0
H N C2' H3 120.0 120.0
H2 N C2' H3 240.0 240.0
H2'1 C2' C3' H3'1 62.8 179.9
H2'1 C2' C3' H3'2 302.8 60.0
C3' C2' H2'1 N 237.8 240.0
C3' C2' H2'1 H2'2 118.9 120.0
N C2' H2'1 H2'2 241.1 240.0
H2'1 C2' N H 60.0 60.0
H2'1 C2' N H2 180.0 180.0
H2'1 C2' N H3 300.0 300.0
H2'2 C2' C3' H3'1 182.8 300.0
H2'2 C2' C3' H3'2 62.8 180.0
C3' C2' H2'2 N 122.2 119.9
C3' C2' H2'2 H2'1 241.1 240.0
N C2' H2'2 H2'1 118.9 120.0
H2'2 C2' N H 300.0 299.9
H2'2 C2' N H2 60.0 59.9
H2'2 C2' N H3 180.0 180.0
H N C2' H2'1 60.0 60.0
H N C2' H2'2 300.0 299.9
C2' N H H2 120.0 120.0
C2' N H H3 240.0 240.0
H2 N H H3 120.0 120.0
H2 N C2' H2'1 180.0 180.0
H2 N C2' H2'2 60.0 59.9
C2' N H2 H 240.0 240.0
C2' N H2 H3 120.0 120.0
H N H2 H3 240.0 240.0
H3 N C2' H2'1 300.0 300.0
H3 N C2' H2'2 180.0 180.0
C2' N H3 H 120.0 120.0
C2' N H3 H2 240.0 239.9
H N H3 H2 120.0 120.0
C8 N9 C8' H8'1 95.1 145.1
C8 N9 C8' H8'2 335.1 25.0
C8' N9 C8 C4 183.4 179.7
C8 N9 C4 C5 0.9 359.6
C8 N9 C4 N3 180.7 180.5
N7 C8 N9 H8 180.0 180.0
N9 C8 N7 C5 359.3 360.0
C4 N9 C8' H8'1 279.2 324.7
C4 N9 C8' H8'2 159.3 204.7
C8' N9 C4 C8 176.5 180.3
C4 N9 C8 N7 359.9 0.3
C4 N9 C8 H8 179.8 180.3
N7 C5 C4 N9 358.6 0.4
C6 C5 C4 N9 179.0 180.2
C5 C4 N9 N3 180.2 179.2
C2 N3 C4 N9 183.0 179.6
N7 C8 N9 C4 359.9 0.3
N9 C8 N7 H8 180.0 180.0
C8 N7 C5 C6 180.8 180.0
C8 N7 C5 C4 1.3 359.8
H8 C8 N9 C4 179.8 180.3
N9 C8 H8 N7 180.0 180.0
H8 C8 N7 C5 179.3 180.0
N9 C4 C5 N7 358.6 0.4
C5 N7 C8 H8 179.3 180.0
C6 C5 N7 C4 179.6 180.2
N7 C5 C6 O6 358.0 0.0
N7 C5 C6 N1 177.5 180.0
N7 C5 C4 N3 178.8 179.7
N9 C4 C5 C6 179.0 180.2
N7 C5 C6 C4 180.5 179.8
C6 C5 C4 N3 359.2 359.5
O6 C6 C5 N1 180.4 180.1
C5 C6 N1 C2 4.8 360.0
C5 C6 N1 HN1 184.8 180.0
N9 C4 C5 N3 179.8 180.7
N7 C5 C4 C6 179.6 180.2
C4 C5 C6 O6 177.5 180.3
C4 C5 C6 N1 357.1 0.2
C2 N3 C4 C5 2.7 0.5
O6 C6 C5 C4 177.5 180.3
C5 C6 O6 N1 179.6 179.9
O6 C6 N1 C2 184.5 179.9
O6 C6 N1 HN1 4.4 360.0
N1 C6 C5 C4 357.1 0.2
C5 C6 N1 O6 180.4 180.1
C2 N1 C6 HN1 180.0 180.0
C6 N1 C2 N2 177.1 180.0
C6 N1 C2 N3 356.8 0.0
C6 N1 C2 HN1 180.0 180.0
N2 C2 N1 N3 180.2 180.0
N1 C2 N2 HN21 179.8 360.0
N1 C2 N2 HN22 359.7 180.0
N1 C2 N3 C4 359.2 359.7
C6 N1 HN1 C2 180.0 180.0
HN1 N1 C2 N2 357.1 0.0
HN1 N1 C2 N3 176.9 180.0
N2 C2 N1 HN1 357.1 0.0
N1 C2 N2 N3 179.8 180.0
N2 C2 N3 C4 179.0 179.7
HN21 N2 C2 HN22 180.1 179.9
N9 C4 N3 C2 183.0 179.6
C5 C4 N3 C2 2.7 0.5
N3 C2 N1 HN1 176.9 180.0
N1 C2 N3 N2 180.3 180.0
N3 C2 N2 HN21 0.0 180.0
N3 C2 N2 HN22 180.0 0.0
HN21 N2 C2 N3 0.0 180.0
C2 N2 HN21 HN22 179.9 180.1
HN22 N2 C2 N3 180.0 0.0
C2 N2 HN22 HN21 180.1 179.9
N9 C4 N3 C5 180.3 179.1