PDB Chemical Component GPA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for GPA
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.478 |
1.469 |
| N |
HN1 |
1.000 |
1.009 |
| N |
HN2 |
1.000 |
1.010 |
| CA |
C |
1.474 |
1.507 |
| CA |
CD |
1.548 |
1.530 |
| CA |
HA |
1.100 |
1.089 |
| C |
OA1 |
1.233 |
1.342 |
| C |
OA2 |
1.253 |
1.208 |
| OA1 |
HXT |
0.950 |
0.967 |
| CD |
NE |
1.433 |
1.464 |
| CD |
HCD1 |
1.100 |
1.090 |
| CD |
HCD2 |
1.100 |
1.090 |
| NE |
CZ |
1.355 |
1.375 |
| NE |
HNE1 |
1.000 |
0.970 |
| CZ |
NH1 |
1.365 |
1.375 |
| CZ |
NH2 |
1.320 |
1.304 |
| NH1 |
HN11 |
1.000 |
0.971 |
| NH1 |
HN12 |
1.000 |
0.970 |
| NH2 |
HN21 |
1.000 |
0.970 |
Bond Angles for GPA
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
HN1 |
109.5 |
106.7 |
| CA |
N |
HN2 |
109.5 |
106.7 |
| N |
CA |
C |
113.2 |
109.4 |
| N |
CA |
CD |
108.2 |
109.5 |
| N |
CA |
HA |
108.6 |
109.5 |
| HN1 |
N |
HN2 |
109.4 |
106.7 |
| C |
CA |
CD |
111.4 |
109.5 |
| C |
CA |
HA |
105.1 |
109.5 |
| CA |
C |
OA1 |
122.7 |
120.0 |
| CA |
C |
OA2 |
119.5 |
120.0 |
| CD |
CA |
HA |
110.4 |
109.5 |
| CA |
CD |
NE |
110.0 |
109.5 |
| CA |
CD |
HCD1 |
109.3 |
109.4 |
| CA |
CD |
HCD2 |
109.2 |
109.4 |
| OA1 |
C |
OA2 |
117.8 |
120.0 |
| C |
OA1 |
HXT |
109.5 |
120.1 |
| NE |
CD |
HCD1 |
109.3 |
109.5 |
| NE |
CD |
HCD2 |
109.2 |
109.5 |
| CD |
NE |
CZ |
125.0 |
120.0 |
| CD |
NE |
HNE1 |
117.5 |
120.0 |
| HCD1 |
CD |
HCD2 |
109.9 |
109.5 |
| CZ |
NE |
HNE1 |
117.5 |
119.9 |
| NE |
CZ |
NH1 |
123.9 |
120.0 |
| NE |
CZ |
NH2 |
118.4 |
120.0 |
| NH1 |
CZ |
NH2 |
117.6 |
120.0 |
| CZ |
NH1 |
HN11 |
110.6 |
120.0 |
| CZ |
NH1 |
HN12 |
124.7 |
120.0 |
| CZ |
NH2 |
HN21 |
110.6 |
120.0 |
| HN11 |
NH1 |
HN12 |
124.7 |
120.0 |
Torsion Angles for GPA
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HN1 |
N |
CA |
HN2 |
240.0 |
246.2 |
| C |
CA |
N |
CD |
124.0 |
120.0 |
| C |
CA |
N |
HA |
243.8 |
240.0 |
| N |
CA |
C |
OA1 |
15.0 |
160.0 |
| N |
CA |
C |
OA2 |
194.7 |
340.0 |
| CD |
CA |
N |
HA |
119.8 |
120.1 |
| N |
CA |
CD |
NE |
289.3 |
305.0 |
| N |
CA |
CD |
HCD1 |
49.3 |
65.0 |
| N |
CA |
CD |
HCD2 |
169.5 |
184.9 |
| CA |
N |
HN1 |
HN2 |
120.0 |
113.8 |
| HN1 |
N |
CA |
C |
335.5 |
60.0 |
| HN1 |
N |
CA |
CD |
211.5 |
300.0 |
| HN1 |
N |
CA |
HA |
91.7 |
179.9 |
| CA |
N |
HN2 |
HN1 |
240.0 |
246.2 |
| HN2 |
N |
CA |
C |
95.4 |
173.7 |
| HN2 |
N |
CA |
CD |
331.4 |
53.8 |
| HN2 |
N |
CA |
HA |
211.6 |
293.7 |
| C |
CA |
N |
HN1 |
335.5 |
60.0 |
| C |
CA |
N |
HN2 |
95.4 |
173.7 |
| N |
CA |
C |
CD |
237.8 |
240.0 |
| N |
CA |
C |
HA |
118.3 |
120.0 |
| CD |
CA |
C |
HA |
240.5 |
240.0 |
| C |
CA |
CD |
NE |
164.3 |
185.0 |
| C |
CA |
CD |
HCD1 |
284.3 |
305.0 |
| C |
CA |
CD |
HCD2 |
44.5 |
65.0 |
| OA1 |
C |
CA |
OA2 |
180.4 |
179.9 |
| CA |
C |
OA1 |
HXT |
179.6 |
180.0 |
| CD |
CA |
N |
HN1 |
211.5 |
300.0 |
| CD |
CA |
N |
HN2 |
331.4 |
53.8 |
| N |
CA |
CD |
C |
125.0 |
120.0 |
| N |
CA |
CD |
HA |
241.4 |
239.9 |
| C |
CA |
CD |
HA |
116.3 |
120.0 |
| CD |
CA |
C |
OA1 |
137.2 |
279.9 |
| CD |
CA |
C |
OA2 |
316.9 |
100.0 |
| NE |
CD |
CA |
HCD1 |
240.0 |
240.0 |
| NE |
CD |
CA |
HCD2 |
119.8 |
120.1 |
| CA |
CD |
NE |
CZ |
117.3 |
180.0 |
| CA |
CD |
NE |
HNE1 |
297.4 |
360.0 |
| HCD1 |
CD |
CA |
HCD2 |
239.8 |
240.1 |
| HA |
CA |
N |
HN1 |
91.7 |
179.9 |
| HA |
CA |
N |
HN2 |
211.6 |
293.7 |
| N |
CA |
HA |
C |
238.7 |
240.0 |
| N |
CA |
HA |
CD |
118.4 |
120.0 |
| C |
CA |
HA |
CD |
239.8 |
240.0 |
| HA |
CA |
C |
OA1 |
256.8 |
40.0 |
| HA |
CA |
C |
OA2 |
76.4 |
220.0 |
| HA |
CA |
CD |
NE |
47.9 |
65.0 |
| HA |
CA |
CD |
HCD1 |
167.9 |
185.0 |
| HA |
CA |
CD |
HCD2 |
288.1 |
305.0 |
| OA1 |
C |
CA |
CD |
137.2 |
279.9 |
| OA1 |
C |
CA |
HA |
256.8 |
40.0 |
| CA |
C |
OA1 |
OA2 |
179.6 |
180.1 |
| OA2 |
C |
CA |
CD |
316.9 |
100.0 |
| OA2 |
C |
CA |
HA |
76.4 |
220.0 |
| CA |
C |
OA2 |
OA1 |
180.4 |
179.9 |
| OA2 |
C |
OA1 |
HXT |
360.0 |
359.9 |
| HXT |
OA1 |
C |
OA2 |
360.0 |
359.9 |
| NE |
CD |
CA |
HA |
47.9 |
65.0 |
| CA |
CD |
NE |
HCD1 |
120.0 |
120.0 |
| CA |
CD |
NE |
HCD2 |
240.2 |
240.0 |
| HCD1 |
CD |
NE |
HCD2 |
120.2 |
120.0 |
| CZ |
NE |
CD |
HNE1 |
180.0 |
180.0 |
| CD |
NE |
CZ |
NH1 |
359.1 |
360.0 |
| CD |
NE |
CZ |
NH2 |
179.3 |
180.0 |
| HCD1 |
CD |
CA |
HA |
167.9 |
185.0 |
| CA |
CD |
HCD1 |
NE |
239.5 |
240.0 |
| CA |
CD |
HCD1 |
HCD2 |
119.8 |
119.9 |
| NE |
CD |
HCD1 |
HCD2 |
240.2 |
239.9 |
| HCD1 |
CD |
NE |
CZ |
357.3 |
60.0 |
| HCD1 |
CD |
NE |
HNE1 |
177.3 |
240.0 |
| HCD2 |
CD |
CA |
HA |
288.1 |
305.0 |
| CA |
CD |
HCD2 |
NE |
120.3 |
120.0 |
| CA |
CD |
HCD2 |
HCD1 |
240.1 |
240.1 |
| NE |
CD |
HCD2 |
HCD1 |
119.8 |
120.0 |
| HCD2 |
CD |
NE |
CZ |
237.1 |
300.0 |
| HCD2 |
CD |
NE |
HNE1 |
57.1 |
120.0 |
| CZ |
NE |
CD |
HCD1 |
357.3 |
60.0 |
| CZ |
NE |
CD |
HCD2 |
237.1 |
300.0 |
| CD |
NE |
CZ |
HNE1 |
180.0 |
180.0 |
| NH1 |
CZ |
NE |
NH2 |
179.8 |
180.0 |
| NE |
CZ |
NH1 |
HN11 |
180.0 |
180.0 |
| NE |
CZ |
NH1 |
HN12 |
360.0 |
359.9 |
| NE |
CZ |
NH2 |
HN21 |
359.9 |
180.0 |
| HNE1 |
NE |
CD |
HCD1 |
177.3 |
240.0 |
| HNE1 |
NE |
CD |
HCD2 |
57.1 |
120.0 |
| CD |
NE |
HNE1 |
CZ |
180.0 |
180.0 |
| HNE1 |
NE |
CZ |
NH1 |
179.1 |
180.0 |
| HNE1 |
NE |
CZ |
NH2 |
359.3 |
0.0 |
| NH1 |
CZ |
NE |
HNE1 |
179.1 |
180.0 |
| NE |
CZ |
NH1 |
NH2 |
180.2 |
180.0 |
| NH1 |
CZ |
NH2 |
HN21 |
180.1 |
360.0 |
| HN11 |
NH1 |
CZ |
HN12 |
180.0 |
180.1 |
| NH2 |
CZ |
NE |
HNE1 |
359.3 |
0.0 |
| NE |
CZ |
NH2 |
NH1 |
179.8 |
180.0 |
| NH2 |
CZ |
NH1 |
HN11 |
359.8 |
0.0 |
| NH2 |
CZ |
NH1 |
HN12 |
179.8 |
179.9 |
| HN11 |
NH1 |
CZ |
NH2 |
359.8 |
0.0 |
| CZ |
NH1 |
HN11 |
HN12 |
180.0 |
179.9 |
| HN12 |
NH1 |
CZ |
NH2 |
179.8 |
179.9 |
| CZ |
NH1 |
HN12 |
HN11 |
180.0 |
180.1 |