PDB Chemical Component GP6
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for GP6
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C1 |
1.326 |
1.303 |
N1 |
HN1 |
1.019 |
0.971 |
N2 |
C1 |
1.331 |
1.378 |
N2 |
HN21 |
1.020 |
0.970 |
N2 |
HN22 |
1.021 |
0.969 |
C1 |
C2 |
1.400 |
1.479 |
C2 |
C3 |
1.399 |
1.396 |
C2 |
C7 |
1.395 |
1.395 |
C3 |
C4 |
1.398 |
1.378 |
C3 |
H3 |
1.103 |
1.080 |
C4 |
C5 |
1.403 |
1.389 |
C4 |
H4 |
1.103 |
1.080 |
C5 |
C6 |
1.396 |
1.390 |
C5 |
N3 |
1.357 |
1.396 |
C6 |
C7 |
1.397 |
1.378 |
C6 |
H6 |
1.103 |
1.081 |
C7 |
H7 |
1.104 |
1.080 |
N3 |
C8 |
1.345 |
1.348 |
N3 |
HN3 |
1.020 |
0.969 |
C8 |
O1 |
1.240 |
1.214 |
C8 |
N4 |
1.338 |
1.348 |
N4 |
C9 |
1.343 |
1.400 |
N4 |
HN4 |
1.019 |
0.970 |
C9 |
C10 |
1.398 |
1.388 |
C9 |
C14 |
1.400 |
1.389 |
C10 |
C11 |
1.397 |
1.381 |
C10 |
H10 |
1.103 |
1.080 |
C11 |
C12 |
1.395 |
1.383 |
C11 |
H11 |
1.103 |
1.079 |
C12 |
C13 |
1.390 |
1.383 |
C12 |
CL |
1.717 |
1.737 |
C13 |
C14 |
1.396 |
1.381 |
C13 |
H13 |
1.103 |
1.081 |
C14 |
H14 |
1.104 |
1.080 |
Bond Angles for GP6
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C1 |
N1 |
HN1 |
53.4 |
120.0 |
N1 |
C1 |
N2 |
119.1 |
120.0 |
N1 |
C1 |
C2 |
120.9 |
120.0 |
C1 |
N2 |
HN21 |
119.2 |
120.0 |
C1 |
N2 |
HN22 |
108.8 |
120.0 |
N2 |
C1 |
C2 |
119.2 |
120.0 |
HN21 |
N2 |
HN22 |
108.7 |
120.0 |
C1 |
C2 |
C3 |
122.0 |
120.1 |
C1 |
C2 |
C7 |
120.7 |
120.1 |
C3 |
C2 |
C7 |
117.3 |
119.8 |
C2 |
C3 |
C4 |
121.4 |
120.0 |
C2 |
C3 |
H3 |
119.3 |
120.0 |
C2 |
C7 |
C6 |
121.9 |
120.0 |
C2 |
C7 |
H7 |
119.0 |
120.0 |
C4 |
C3 |
H3 |
119.3 |
120.0 |
C3 |
C4 |
C5 |
120.6 |
120.0 |
C3 |
C4 |
H4 |
119.5 |
119.9 |
C5 |
C4 |
H4 |
119.9 |
120.0 |
C4 |
C5 |
C6 |
118.3 |
120.2 |
C4 |
C5 |
N3 |
122.4 |
119.9 |
C6 |
C5 |
N3 |
119.2 |
119.9 |
C5 |
C6 |
C7 |
120.4 |
120.1 |
C5 |
C6 |
H6 |
119.8 |
120.0 |
C5 |
N3 |
C8 |
125.1 |
119.9 |
C5 |
N3 |
HN3 |
106.7 |
120.0 |
C7 |
C6 |
H6 |
119.8 |
119.9 |
C6 |
C7 |
H7 |
119.1 |
120.0 |
C8 |
N3 |
HN3 |
106.7 |
120.0 |
N3 |
C8 |
O1 |
123.5 |
120.1 |
N3 |
C8 |
N4 |
114.2 |
119.9 |
O1 |
C8 |
N4 |
122.2 |
120.0 |
C8 |
N4 |
C9 |
127.5 |
120.0 |
C8 |
N4 |
HN4 |
116.0 |
120.1 |
C9 |
N4 |
HN4 |
116.5 |
119.9 |
N4 |
C9 |
C10 |
118.9 |
120.0 |
N4 |
C9 |
C14 |
122.1 |
120.1 |
C10 |
C9 |
C14 |
119.0 |
119.9 |
C9 |
C10 |
C11 |
120.5 |
119.9 |
C9 |
C10 |
H10 |
119.7 |
120.0 |
C9 |
C14 |
C13 |
120.6 |
119.9 |
C9 |
C14 |
H14 |
119.8 |
120.0 |
C11 |
C10 |
H10 |
119.8 |
120.1 |
C10 |
C11 |
C12 |
120.0 |
120.0 |
C10 |
C11 |
H11 |
120.1 |
119.9 |
C12 |
C11 |
H11 |
120.0 |
120.0 |
C11 |
C12 |
C13 |
120.0 |
120.2 |
C11 |
C12 |
CL |
121.4 |
119.9 |
C13 |
C12 |
CL |
118.6 |
119.9 |
C12 |
C13 |
C14 |
120.0 |
120.1 |
C12 |
C13 |
H13 |
119.8 |
120.0 |
C14 |
C13 |
H13 |
120.2 |
120.0 |
C13 |
C14 |
H14 |
119.6 |
120.1 |
Torsion Angles for GP6
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N1 |
C1 |
N2 |
HN21 |
179.9 |
360.0 |
N1 |
C1 |
N2 |
HN22 |
54.7 |
179.8 |
N2 |
C1 |
N1 |
C2 |
190.2 |
180.0 |
N1 |
C1 |
C2 |
C3 |
357.9 |
359.9 |
N1 |
C1 |
C2 |
C7 |
176.8 |
179.8 |
HN1 |
N1 |
C1 |
N2 |
175.0 |
179.9 |
HN1 |
N1 |
C1 |
C2 |
344.9 |
360.0 |
N2 |
C1 |
N1 |
HN1 |
175.0 |
179.9 |
N1 |
C1 |
N2 |
C2 |
170.0 |
180.0 |
HN21 |
N2 |
C1 |
HN22 |
125.2 |
180.2 |
N2 |
C1 |
C2 |
C3 |
167.7 |
180.0 |
N2 |
C1 |
C2 |
C7 |
346.7 |
359.8 |
C1 |
N2 |
HN21 |
HN22 |
234.7 |
179.8 |
HN21 |
N2 |
C1 |
C2 |
9.9 |
179.9 |
C1 |
N2 |
HN22 |
HN21 |
131.2 |
180.2 |
HN22 |
N2 |
C1 |
C2 |
244.7 |
359.7 |
C2 |
C1 |
N1 |
HN1 |
344.9 |
360.0 |
N1 |
C1 |
C2 |
N2 |
190.2 |
180.0 |
C2 |
C1 |
N2 |
HN21 |
9.9 |
179.9 |
C2 |
C1 |
N2 |
HN22 |
244.7 |
359.7 |
C3 |
C2 |
C1 |
C7 |
181.1 |
180.2 |
C1 |
C2 |
C3 |
C4 |
178.9 |
180.0 |
C1 |
C2 |
C3 |
H3 |
358.9 |
0.0 |
C1 |
C2 |
C7 |
C6 |
181.1 |
179.7 |
C1 |
C2 |
C7 |
H7 |
1.2 |
0.2 |
C1 |
C2 |
C3 |
C7 |
179.0 |
179.8 |
C3 |
C2 |
C7 |
C6 |
0.1 |
359.5 |
C3 |
C2 |
C7 |
H7 |
180.2 |
180.0 |
C4 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
C2 |
C3 |
C4 |
C5 |
0.1 |
360.0 |
C2 |
C3 |
C4 |
H4 |
180.0 |
180.0 |
C1 |
C2 |
C7 |
C3 |
181.0 |
180.2 |
C7 |
C2 |
C3 |
C4 |
360.0 |
0.2 |
C7 |
C2 |
C3 |
H3 |
179.9 |
180.2 |
C5 |
C6 |
C7 |
C2 |
359.8 |
0.5 |
C2 |
C7 |
C6 |
H6 |
179.8 |
180.2 |
C6 |
C7 |
C2 |
H7 |
179.9 |
179.5 |
C4 |
C3 |
C2 |
C7 |
360.0 |
0.2 |
C2 |
C3 |
C4 |
H3 |
180.0 |
180.0 |
C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
C3 |
C4 |
C5 |
C6 |
359.9 |
0.1 |
C3 |
C4 |
C5 |
N3 |
179.3 |
180.0 |
H3 |
C3 |
C2 |
C7 |
179.9 |
180.2 |
C2 |
C3 |
H3 |
C4 |
180.0 |
180.0 |
H3 |
C3 |
C4 |
C5 |
180.1 |
180.0 |
H3 |
C3 |
C4 |
H4 |
0.1 |
0.1 |
C5 |
C4 |
C3 |
H3 |
180.1 |
180.0 |
C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
C6 |
C5 |
C4 |
N3 |
180.5 |
180.0 |
C4 |
C5 |
C6 |
C7 |
0.2 |
359.7 |
C4 |
C5 |
C6 |
H6 |
180.2 |
180.0 |
C4 |
C5 |
N3 |
C8 |
307.4 |
33.2 |
C4 |
C5 |
N3 |
HN3 |
182.2 |
213.2 |
H4 |
C4 |
C3 |
H3 |
0.1 |
0.1 |
C3 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
H4 |
C4 |
C5 |
C6 |
179.9 |
180.0 |
H4 |
C4 |
C5 |
N3 |
359.4 |
360.0 |
C2 |
C7 |
C6 |
C5 |
359.8 |
0.5 |
C6 |
C5 |
C4 |
H4 |
179.9 |
180.0 |
C4 |
C5 |
C6 |
N3 |
179.5 |
180.0 |
C6 |
C5 |
N3 |
C8 |
126.9 |
213.1 |
C6 |
C5 |
N3 |
HN3 |
1.7 |
33.2 |
C7 |
C6 |
C5 |
H6 |
180.0 |
179.7 |
C5 |
C6 |
C7 |
H7 |
179.7 |
180.0 |
N3 |
C5 |
C4 |
H4 |
359.4 |
360.0 |
C4 |
C5 |
N3 |
C6 |
180.5 |
180.0 |
N3 |
C5 |
C6 |
C7 |
180.7 |
179.7 |
N3 |
C5 |
C6 |
H6 |
0.7 |
0.0 |
C8 |
N3 |
C5 |
HN3 |
125.2 |
180.0 |
C5 |
N3 |
C8 |
O1 |
3.5 |
5.4 |
C5 |
N3 |
C8 |
N4 |
183.5 |
185.5 |
C2 |
C7 |
C6 |
H7 |
180.1 |
180.5 |
C7 |
C6 |
C5 |
N3 |
180.7 |
179.7 |
C5 |
C6 |
C7 |
H6 |
180.0 |
180.3 |
H6 |
C6 |
C5 |
N3 |
0.7 |
0.0 |
C5 |
C6 |
H6 |
C7 |
180.0 |
179.7 |
H6 |
C6 |
C7 |
H7 |
359.8 |
359.7 |
C2 |
C7 |
H7 |
C6 |
179.9 |
179.5 |
H7 |
C7 |
C6 |
H6 |
359.8 |
359.7 |
C5 |
N3 |
C8 |
HN3 |
234.8 |
180.0 |
O1 |
C8 |
N3 |
N4 |
180.0 |
179.9 |
N3 |
C8 |
N4 |
C9 |
167.8 |
185.4 |
N3 |
C8 |
N4 |
HN4 |
347.8 |
5.3 |
C5 |
N3 |
HN3 |
C8 |
135.8 |
180.0 |
HN3 |
N3 |
C8 |
O1 |
128.7 |
185.3 |
HN3 |
N3 |
C8 |
N4 |
308.7 |
5.4 |
O1 |
C8 |
N3 |
HN3 |
128.7 |
185.3 |
N3 |
C8 |
O1 |
N4 |
180.0 |
180.1 |
O1 |
C8 |
N4 |
C9 |
347.8 |
5.5 |
O1 |
C8 |
N4 |
HN4 |
167.8 |
185.4 |
N4 |
C8 |
N3 |
HN3 |
308.7 |
5.4 |
N3 |
C8 |
N4 |
O1 |
180.0 |
179.9 |
C9 |
N4 |
C8 |
HN4 |
180.0 |
180.1 |
C8 |
N4 |
C9 |
C10 |
152.6 |
32.7 |
C8 |
N4 |
C9 |
C14 |
332.1 |
212.4 |
C8 |
N4 |
C9 |
HN4 |
180.0 |
179.9 |
C10 |
C9 |
N4 |
C14 |
180.5 |
180.3 |
N4 |
C9 |
C10 |
C11 |
178.5 |
180.0 |
N4 |
C9 |
C10 |
H10 |
358.5 |
360.0 |
N4 |
C9 |
C14 |
C13 |
181.3 |
179.7 |
N4 |
C9 |
C14 |
H14 |
1.3 |
0.3 |
C8 |
N4 |
HN4 |
C9 |
180.0 |
180.1 |
HN4 |
N4 |
C9 |
C10 |
332.6 |
212.8 |
HN4 |
N4 |
C9 |
C14 |
152.1 |
32.5 |
C10 |
C9 |
N4 |
HN4 |
332.6 |
212.8 |
N4 |
C9 |
C10 |
C14 |
179.5 |
179.7 |
C10 |
C9 |
C14 |
C13 |
0.7 |
359.4 |
C10 |
C9 |
C14 |
H14 |
180.7 |
180.0 |
C11 |
C10 |
C9 |
H10 |
180.0 |
180.1 |
C9 |
C10 |
C11 |
C12 |
0.7 |
360.0 |
C9 |
C10 |
C11 |
H11 |
180.6 |
180.0 |
C14 |
C9 |
N4 |
HN4 |
152.1 |
32.5 |
N4 |
C9 |
C14 |
C10 |
180.5 |
180.3 |
C14 |
C9 |
C10 |
C11 |
359.0 |
0.3 |
C14 |
C9 |
C10 |
H10 |
179.0 |
180.2 |
C12 |
C13 |
C14 |
C9 |
359.8 |
0.6 |
C9 |
C14 |
C13 |
H13 |
179.8 |
180.3 |
C13 |
C14 |
C9 |
H14 |
180.0 |
179.4 |
C11 |
C10 |
C9 |
C14 |
359.0 |
0.3 |
C9 |
C10 |
C11 |
H10 |
180.0 |
179.9 |
C12 |
C11 |
C10 |
H11 |
180.0 |
180.0 |
C10 |
C11 |
C12 |
C13 |
359.8 |
0.0 |
C10 |
C11 |
C12 |
CL |
179.9 |
180.0 |
H10 |
C10 |
C9 |
C14 |
179.0 |
180.2 |
C9 |
C10 |
H10 |
C11 |
180.0 |
180.1 |
H10 |
C10 |
C11 |
C12 |
180.7 |
180.0 |
H10 |
C10 |
C11 |
H11 |
0.7 |
0.1 |
C12 |
C11 |
C10 |
H10 |
180.7 |
180.0 |
C10 |
C11 |
C12 |
H11 |
180.0 |
180.0 |
C13 |
C12 |
C11 |
CL |
179.9 |
180.0 |
C11 |
C12 |
C13 |
C14 |
359.9 |
359.7 |
C11 |
C12 |
C13 |
H13 |
179.9 |
180.0 |
H11 |
C11 |
C10 |
H10 |
0.7 |
0.1 |
C10 |
C11 |
H11 |
C12 |
180.0 |
180.0 |
H11 |
C11 |
C12 |
C13 |
179.9 |
180.0 |
H11 |
C11 |
C12 |
CL |
359.9 |
360.0 |
C9 |
C14 |
C13 |
C12 |
359.8 |
0.6 |
C13 |
C12 |
C11 |
H11 |
179.9 |
180.0 |
C11 |
C12 |
C13 |
CL |
180.1 |
180.0 |
C14 |
C13 |
C12 |
H13 |
180.0 |
179.7 |
C12 |
C13 |
C14 |
H14 |
179.8 |
180.0 |
CL |
C12 |
C11 |
H11 |
359.9 |
360.0 |
C11 |
C12 |
CL |
C13 |
179.9 |
180.0 |
CL |
C12 |
C13 |
C14 |
179.9 |
179.7 |
CL |
C12 |
C13 |
H13 |
359.8 |
0.0 |
C9 |
C14 |
C13 |
H14 |
180.0 |
180.6 |
C14 |
C13 |
C12 |
CL |
179.9 |
179.7 |
C12 |
C13 |
C14 |
H13 |
180.0 |
180.3 |
H13 |
C13 |
C12 |
CL |
359.8 |
0.0 |
C12 |
C13 |
H13 |
C14 |
180.0 |
179.7 |
H13 |
C13 |
C14 |
H14 |
359.8 |
359.7 |
C9 |
C14 |
H14 |
C13 |
180.0 |
179.4 |
H14 |
C14 |
C13 |
H13 |
359.8 |
359.7 |