PDB Chemical Component GP2

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GP2

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O6 C6 1.227 1.219
C6 C5 1.389 1.415
C6 N1 1.385 1.351
C5 N7 1.355 1.355
C5 C4 1.394 1.399
N7 C8 1.363 1.301
C4 N3 1.368 1.337
C4 N9 1.370 1.368
N3 C2 1.383 1.314
C2 N1 1.387 1.363
C2 N2 1.333 1.372
N1 HN1 1.019 0.969
N2 HN21 1.019 0.970
N2 HN22 1.019 0.970
N9 C8 1.379 1.366
N9 C1' 1.473 1.464
C8 H8 1.104 1.080
C1' C2' 1.531 1.544
C1' O4' 1.412 1.445
C1' H1' 1.115 1.090
C2' O2' 1.430 1.429
C2' C3' 1.526 1.546
C2' H1 1.115 1.090
O2' H2' 0.951 0.967
C3' O3' 1.407 1.429
C3' C4' 1.540 1.544
C3' H3' 1.115 1.090
O3' H2 0.950 0.967
O4' C4' 1.415 1.444
C4' C5' 1.527 1.530
C4' H4' 1.114 1.090
C5' O5' 1.434 1.429
C5' H5'1 1.115 1.089
C5' H5'2 1.116 1.090
O5' PA 1.635 1.610
PA O1A 1.488 1.480
PA O2A 1.542 1.609
PA C3A 1.732 1.821
O2A H2A 0.950 0.967
C3A PB 1.720 1.823
C3A H3A1 1.114 1.090
C3A H3A2 1.115 1.090
PB O1B 1.491 1.480
PB O3B 1.539 1.610
PB O2B 1.538 1.609
O3B H3B 0.950 0.967
O2B H2B 0.950 0.967

Bond Angles for GP2

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O6 C6 C5 120.2 120.8
O6 C6 N1 119.9 120.8
C5 C6 N1 119.8 118.3
C6 C5 N7 133.5 134.2
C6 C5 C4 118.5 118.6
C6 N1 C2 120.9 120.3
C6 N1 HN1 119.5 119.8
N7 C5 C4 108.0 107.3
C5 N7 C8 108.7 109.4
C5 C4 N3 121.6 119.7
C5 C4 N9 107.2 106.1
N7 C8 N9 108.1 109.8
N7 C8 H8 125.5 125.1
N3 C4 N9 131.2 134.2
C4 N3 C2 119.9 121.2
C4 N9 C8 108.0 107.5
C4 N9 C1' 121.5 126.3
N3 C2 N1 119.3 121.9
N3 C2 N2 120.0 119.1
N1 C2 N2 120.2 119.0
C2 N1 HN1 119.6 119.8
C2 N2 HN21 120.0 120.0
C2 N2 HN22 108.4 120.0
HN21 N2 HN22 108.5 120.0
C8 N9 C1' 130.5 126.2
N9 C8 H8 126.5 125.1
N9 C1' C2' 115.1 110.4
N9 C1' O4' 113.3 110.4
N9 C1' H1' 101.7 110.3
C2' C1' O4' 106.3 104.9
C2' C1' H1' 109.3 110.4
C1' C2' O2' 113.6 110.7
C1' C2' C3' 100.6 104.0
C1' C2' H1 114.9 110.4
O4' C1' H1' 111.3 110.4
C1' O4' C4' 106.2 105.2
O2' C2' C3' 115.3 110.5
O2' C2' H1 100.0 110.5
C2' O2' H2' 113.6 106.8
C3' C2' H1 113.2 110.5
C2' C3' O3' 109.9 110.5
C2' C3' C4' 104.2 104.1
C2' C3' H3' 112.4 110.6
O3' C3' C4' 109.1 110.5
O3' C3' H3' 107.9 110.4
C3' O3' H2 109.9 106.8
C4' C3' H3' 113.3 110.5
C3' C4' O4' 108.0 104.8
C3' C4' C5' 114.3 110.5
C3' C4' H4' 107.0 110.4
O4' C4' C5' 108.7 110.4
O4' C4' H4' 112.8 110.4
C5' C4' H4' 106.2 110.3
C4' C5' O5' 114.8 109.5
C4' C5' H5'1 110.3 109.5
C4' C5' H5'2 110.3 109.4
O5' C5' H5'1 110.3 109.5
O5' C5' H5'2 110.2 109.4
C5' O5' PA 116.1 106.8
H5'1 C5' H5'2 100.0 109.5
O5' PA O1A 110.4 109.5
O5' PA O2A 114.7 109.4
O5' PA C3A 102.7 109.5
O1A PA O2A 109.6 109.5
O1A PA C3A 112.6 109.5
O2A PA C3A 106.8 109.5
PA O2A H2A 114.6 106.8
PA C3A PB 113.6 109.5
PA C3A H3A1 110.7 109.4
PA C3A H3A2 110.7 109.4
PB C3A H3A1 110.7 109.5
PB C3A H3A2 110.7 109.5
C3A PB O1B 113.1 109.4
C3A PB O3B 104.8 109.5
C3A PB O2B 107.4 109.5
H3A1 C3A H3A2 99.6 109.5
O1B PB O3B 109.2 109.4
O1B PB O2B 109.5 109.5
O3B PB O2B 112.8 109.5
PB O3B H3B 104.8 106.8
PB O2B H2B 107.4 106.8

Torsion Angles for GP2

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C5 C6 O6 N1 183.2 179.7
O6 C6 C5 N7 357.0 0.0
O6 C6 C5 C4 175.3 180.1
O6 C6 N1 C2 184.3 180.2
O6 C6 N1 HN1 4.3 359.8
O6 C6 C5 N1 176.8 180.3
C5 C6 N1 C2 1.1 0.5
C5 C6 N1 HN1 181.1 180.1
N7 C5 C6 C4 181.7 180.0
C6 C5 N7 C8 179.2 180.0
C6 C5 C4 N3 1.5 359.9
C6 C5 C4 N9 180.8 180.0
O6 C6 N1 C5 183.2 179.7
N1 C6 C5 N7 180.2 179.7
N1 C6 C5 C4 358.5 359.8
N3 C2 N1 C6 359.4 359.5
C6 N1 C2 N2 187.6 179.7
C2 N1 C6 HN1 180.0 180.5
N7 C5 C6 N1 180.2 179.7
C6 C5 N7 C4 178.4 180.0
N7 C5 C4 N3 180.2 179.9
N7 C5 C4 N9 359.5 0.1
C5 N7 C8 N9 359.3 360.0
C5 N7 C8 H8 179.3 180.0
C4 C5 C6 N1 358.5 359.8
C6 C5 C4 N7 181.3 180.0
C4 C5 N7 C8 0.7 360.0
N3 C4 C5 N9 180.7 179.9
C5 C4 N3 C2 359.0 0.1
C5 C4 N9 C8 0.1 359.9
C5 C4 N9 C1' 181.6 180.0
C8 N7 C5 C4 0.7 360.0
C4 N9 C8 N7 0.4 0.1
N7 C8 N9 C1' 178.6 180.0
N9 C8 N7 H8 180.0 180.0
C5 C4 N3 N9 179.1 180.2
N3 C4 N9 C8 179.3 180.1
N3 C4 N9 C1' 0.8 0.1
C4 N3 C2 N1 0.6 0.2
C4 N3 C2 N2 172.4 180.0
C5 C4 N9 N3 180.8 179.8
N7 C8 N9 C4 0.4 0.1
N9 C4 N3 C2 179.9 179.9
C8 N9 C4 C1' 178.4 179.9
C4 N9 C8 H8 180.4 180.1
C4 N9 C1' C2' 145.6 91.5
C4 N9 C1' O4' 268.2 207.0
C4 N9 C1' H1' 27.7 329.2
C6 N1 C2 N3 359.4 359.5
C2 N3 C4 N9 179.9 179.9
N1 C2 N3 N2 188.2 180.2
N3 C2 N1 HN1 179.4 180.0
N3 C2 N2 HN21 180.0 359.9
N3 C2 N2 HN22 54.7 179.7
C6 N1 C2 HN1 180.0 179.5
N3 C2 N1 N2 171.8 179.8
N1 C2 N2 HN21 351.8 179.8
N1 C2 N2 HN22 226.5 359.5
N3 C2 N2 N1 188.2 180.2
N2 C2 N1 HN1 7.5 0.2
HN21 N2 C2 HN22 125.3 180.2
C6 N1 HN1 C2 180.0 180.5
HN1 N1 C2 N2 7.5 0.2
C2 N2 HN21 HN22 234.8 179.8
C2 N2 HN22 HN21 131.8 180.2
N7 C8 N9 H8 180.0 180.0
C4 N9 C8 C1' 181.8 180.1
C8 N9 C1' C2' 327.6 271.5
C8 N9 C1' O4' 90.2 27.0
C8 N9 C1' H1' 209.6 149.2
C4 N9 C1' C8 178.0 179.9
C1' N9 C8 H8 358.6 0.0
C2' C1' N9 O4' 237.4 244.5
C2' C1' N9 H1' 117.9 122.3
N9 C1' C2' O2' 287.3 261.5
N9 C1' C2' C3' 163.5 142.8
N9 C1' C2' H1 41.6 24.2
O4' C1' N9 H1' 240.5 237.8
N9 C1' O4' C4' 194.7 200.6
N7 C8 H8 N9 180.0 180.0
H8 C8 N9 C1' 358.6 0.0
N9 C1' C2' O4' 126.3 118.9
N9 C1' C2' H1' 246.4 237.8
O4' C1' C2' H1' 120.2 118.9
C2' C1' O4' C4' 322.0 319.5
O2' C2' C1' C3' 123.8 118.8
O2' C2' C1' H1 245.7 237.3
C1' C2' O2' H2' 180.0 183.8
C3' C2' C1' H1 121.9 118.6
C1' C2' C3' O3' 94.5 118.8
C1' C2' C3' C4' 337.8 0.1
C1' C2' C3' H3' 214.7 241.4
N9 C1' O4' C2' 232.7 241.1
N9 C1' O4' H1' 113.8 122.2
C2' C1' O4' H1' 241.1 241.1
O4' C1' C2' O2' 161.1 142.6
O4' C1' C2' C3' 37.2 23.9
O4' C1' C2' H1 275.3 265.3
C3' C4' O4' C1' 22.5 40.5
C1' O4' C4' C5' 146.9 159.5
C1' O4' C4' H4' 264.5 281.7
N9 C1' H1' C2' 122.0 122.3
N9 C1' H1' O4' 239.1 237.8
C2' C1' H1' O4' 117.1 115.5
H1' C1' C2' O2' 40.9 23.7
H1' C1' C2' C3' 277.1 265.0
H1' C1' C2' H1 155.2 146.4
H1' C1' O4' C4' 80.9 78.5
O2' C2' C1' O4' 161.1 142.6
O2' C2' C1' H1' 40.9 23.7
C1' C2' O2' C3' 244.6 245.3
C1' C2' O2' H1 122.9 122.6
C3' C2' O2' H1 238.3 237.3
O2' C2' C3' O3' 331.9 359.9
O2' C2' C3' C4' 215.1 241.2
O2' C2' C3' H3' 92.1 122.5
C3' C2' C1' O4' 37.2 23.9
C3' C2' C1' H1' 277.1 265.0
C1' C2' C3' O2' 122.6 118.9
C1' C2' C3' H1 236.9 241.5
O2' C2' C3' H1 114.3 122.6
C3' C2' O2' H2' 295.3 298.5
O3' C3' C2' C4' 116.7 118.7
O3' C3' C2' H3' 239.8 237.4
C2' C3' O3' H2 179.9 65.3
C4' C3' C2' H3' 123.1 118.7
C2' C3' C4' O4' 1.4 335.9
C2' C3' C4' C5' 240.3 217.0
C2' C3' C4' H4' 123.0 94.7
H1 C2' C1' O4' 275.3 265.3
H1 C2' C1' H1' 155.2 146.4
C1' C2' H1 O2' 238.0 237.2
C1' C2' H1 C3' 114.8 114.5
O2' C2' H1 C3' 236.8 237.3
H1 C2' O2' H2' 57.0 61.2
H1 C2' C3' O3' 217.6 237.3
H1 C2' C3' C4' 100.9 118.6
H1 C2' C3' H3' 337.8 359.9
H2' O2' C2' C3' 295.3 298.5
H2' O2' C2' H1 57.0 61.2
O3' C3' C2' H1 217.6 237.3
C2' C3' O3' C4' 246.3 245.3
C2' C3' O3' H3' 122.9 122.7
C4' C3' O3' H3' 236.6 237.4
O3' C3' C4' O4' 244.1 217.2
O3' C3' C4' C5' 123.0 98.3
O3' C3' C4' H4' 5.7 336.0
C1' O4' C4' C3' 22.5 40.5
C4' C3' C2' H1 100.9 118.6
C2' C3' C4' O3' 117.3 118.7
C2' C3' C4' H3' 237.5 241.2
O3' C3' C4' H3' 120.2 122.5
C4' C3' O3' H2 293.6 180.0
O4' C4' C3' C5' 121.1 118.9
O4' C4' C3' H4' 238.4 241.2
C5' C4' C3' H4' 117.3 122.3
C3' C4' C5' O5' 107.6 176.8
C3' C4' C5' H5'1 232.8 296.9
C3' C4' C5' H5'2 342.3 56.9
H3' C3' C2' H1 337.8 359.9
C2' C3' H3' O3' 238.7 237.3
C2' C3' H3' C4' 117.8 114.7
O3' C3' H3' C4' 239.2 237.4
H3' C3' O3' H2 57.0 302.6
H3' C3' C4' O4' 123.9 94.7
H3' C3' C4' C5' 2.8 335.8
H3' C3' C4' H4' 245.6 213.5
H2 O3' C3' C4' 293.6 180.0
H2 O3' C3' H3' 57.0 302.6
C4' O4' C1' H1' 80.9 78.5
O4' C4' C3' H3' 123.9 94.7
C3' C4' O4' C5' 235.5 241.0
C3' C4' O4' H4' 118.0 118.8
C5' C4' O4' H4' 242.5 237.8
O4' C4' C5' O5' 346.9 61.4
O4' C4' C5' H5'1 112.2 181.4
O4' C4' C5' H5'2 221.7 301.5
C5' C4' C3' H3' 2.8 335.8
C3' C4' C5' O4' 120.6 115.4
C3' C4' C5' H4' 242.3 237.7
O4' C4' C5' H4' 121.6 122.2
O5' C5' C4' H5'1 234.7 240.0
O5' C5' C4' H5'2 125.2 119.9
C4' C5' O5' PA 201.9 180.0
H5'1 C5' C4' H5'2 250.5 240.0
H4' C4' C3' H3' 245.6 213.5
C3' C4' H4' O4' 241.4 244.6
C3' C4' H4' C5' 122.4 122.4
O4' C4' H4' C5' 241.0 237.8
H4' C4' C5' O5' 225.3 299.2
H4' C4' C5' H5'1 350.5 59.2
H4' C4' C5' H5'2 100.1 179.2
O5' C5' C4' H4' 225.3 299.2
C4' C5' O5' H5'1 125.3 120.0
C4' C5' O5' H5'2 234.8 240.1
H5'1 C5' O5' H5'2 109.5 120.1
C5' O5' PA O1A 91.7 300.1
C5' O5' PA O2A 216.1 60.1
C5' O5' PA C3A 331.5 180.1
H5'1 C5' C4' H4' 350.5 59.2
C4' C5' H5'1 O5' 232.2 240.0
C4' C5' H5'1 H5'2 116.1 120.0
O5' C5' H5'1 H5'2 243.9 240.0
H5'1 C5' O5' PA 76.6 59.9
H5'2 C5' C4' H4' 100.1 179.2
C4' C5' H5'2 O5' 127.8 119.9
C4' C5' H5'2 H5'1 243.9 240.0
O5' C5' H5'2 H5'1 116.1 120.0
H5'2 C5' O5' PA 327.1 299.9
PA O5' C5' H5'1 76.6 59.9
PA O5' C5' H5'2 327.1 299.9
O1A PA O5' O2A 235.7 240.1
O1A PA O5' C3A 120.2 120.0
O2A PA O5' C3A 244.6 240.0
O5' PA O2A H2A 180.1 60.0
O5' PA C3A PB 135.0 180.0
O5' PA C3A H3A1 260.3 60.0
O5' PA C3A H3A2 9.8 300.1
O5' PA O1A O2A 127.2 119.9
O5' PA O1A C3A 245.9 239.9
O2A PA O1A C3A 118.7 120.0
O1A PA O2A H2A 304.8 180.0
O1A PA C3A PB 16.4 60.0
O1A PA C3A H3A1 141.6 299.9
O1A PA C3A H3A2 251.1 180.0
O5' PA O2A O1A 235.2 240.0
O5' PA O2A C3A 113.0 120.0
O1A PA O2A C3A 237.8 240.0
O2A PA C3A PB 256.1 300.0
O2A PA C3A H3A1 21.3 180.0
O2A PA C3A H3A2 130.8 60.0
O5' PA C3A O1A 118.7 120.1
O5' PA C3A O2A 239.0 240.0
O1A PA C3A O2A 120.3 120.0
C3A PA O2A H2A 67.0 300.0
PB C3A PA H3A1 234.8 120.0
PB C3A PA H3A2 125.2 240.0
PA C3A PB O1B 315.0 60.0
PA C3A PB O3B 196.2 180.0
PA C3A PB O2B 76.0 300.0
H3A1 C3A PA H3A2 250.5 119.9
H2A O2A PA C3A 67.0 300.0
PA C3A PB H3A1 125.3 240.0
PA C3A PB H3A2 234.8 120.0
H3A1 C3A PB H3A2 109.5 240.0
O1B PB C3A O3B 118.8 240.0
O1B PB C3A O2B 239.0 120.0
O3B PB C3A O2B 120.2 240.0
C3A PB O3B H3B 180.0 180.0
C3A PB O2B H2B 180.1 299.9
PA C3A H3A1 PB 233.2 120.0
PA C3A H3A1 H3A2 116.6 240.1
PB C3A H3A1 H3A2 243.4 120.0
H3A1 C3A PB O1B 189.7 180.0
H3A1 C3A PB O3B 70.9 300.0
H3A1 C3A PB O2B 310.7 60.0
PA C3A H3A2 PB 126.8 239.9
PA C3A H3A2 H3A1 243.4 119.9
PB C3A H3A2 H3A1 116.6 240.0
H3A2 C3A PB O1B 80.2 300.0
H3A2 C3A PB O3B 321.4 60.0
H3A2 C3A PB O2B 201.2 180.0
O1B PB C3A H3A1 189.7 180.0
O1B PB C3A H3A2 80.2 300.0
C3A PB O1B O3B 243.7 120.0
C3A PB O1B O2B 119.8 240.0
O3B PB O1B O2B 236.1 120.0
O1B PB O3B H3B 58.5 300.0
O1B PB O2B H2B 303.3 180.0
O3B PB C3A H3A1 70.9 300.0
O3B PB C3A H3A2 321.4 60.0
C3A PB O3B O1B 121.5 240.0
C3A PB O3B O2B 243.5 120.0
O1B PB O3B O2B 122.0 240.0
O3B PB O2B H2B 65.1 60.0
O2B PB C3A H3A1 310.7 60.0
O2B PB C3A H3A2 201.2 180.0
C3A PB O2B O1B 236.8 120.0
C3A PB O2B O3B 115.0 240.0
O1B PB O2B O3B 238.2 120.0
O2B PB O3B H3B 296.5 60.0
H3B O3B PB O2B 296.5 60.0