PDB Chemical Component GP0

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for GP0

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1A	N1	1.411	1.371
C1A	C2A	1.385	1.350
C1A	H1A	1.080	1.080
F1	C2A	1.338	1.351
N1	C5A	1.406	1.345
N1	C1	1.475	1.465
C2A	C3A	1.405	1.418
C3A	O3A	1.229	1.217
C3A	N4	1.396	1.349
N4	C5A	1.393	1.345
N4	HN4	1.000	0.970
C5A	O5A	1.230	1.215
C1	C2	1.558	1.531
C1	O5	1.462	1.430
C1	H1	1.100	1.090
C2	O2	1.432	1.429
C2	C3	1.548	1.532
C2	H2	1.100	1.091
O2	HO2	0.950	0.967
C3	O3	1.419	1.429
C3	C4	1.548	1.532
C3	C7'	1.559	1.530
O3	HO3	0.950	0.967
C4	O4	1.428	1.429
C4	C5	1.552	1.530
C4	H4	1.100	1.091
O4	HO4	0.950	0.967
C5	O5	1.441	1.429
C5	C6	1.517	1.530
C5	H5	1.100	1.090
C6	O6	1.423	1.429
C6	H61	1.100	1.089
C6	H62	1.100	1.089
O6	HO6	0.950	0.966
C7'	H7'	1.100	1.090
C7'	O7'	1.430	1.429
C7'	H14	1.100	1.090
O7'	H15	0.950	0.967

Bond Angles for GP0

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N1	C1A	C2A	119.5	119.7
N1	C1A	H1A	120.3	120.2
C1A	N1	C5A	120.1	120.6
C1A	N1	C1	120.7	119.7
C2A	C1A	H1A	120.2	120.2
C1A	C2A	F1	118.3	120.5
C1A	C2A	C3A	120.4	119.1
F1	C2A	C3A	121.3	120.4
C5A	N1	C1	119.2	119.7
N1	C5A	N4	119.9	120.9
N1	C5A	O5A	121.0	119.5
N1	C1	C2	112.4	109.5
N1	C1	O5	113.4	109.5
N1	C1	H1	105.0	109.5
C2A	C3A	O3A	121.8	120.3
C2A	C3A	N4	120.2	119.3
O3A	C3A	N4	117.9	120.3
C3A	N4	C5A	119.9	120.4
C3A	N4	HN4	120.1	119.8
C5A	N4	HN4	120.0	119.8
N4	C5A	O5A	119.1	119.5
C2	C1	O5	110.6	109.4
C2	C1	H1	108.1	109.4
C1	C2	O2	111.8	109.5
C1	C2	C3	110.8	109.2
C1	C2	H2	107.5	109.5
O5	C1	H1	107.0	109.5
C1	O5	C5	107.1	114.1
O2	C2	C3	111.2	109.5
O2	C2	H2	107.1	109.5
C2	O2	HO2	109.5	114.0
C3	C2	H2	108.2	109.5
C2	C3	O3	111.3	109.6
C2	C3	C4	108.6	109.0
C2	C3	C7'	109.6	109.5
O3	C3	C4	104.7	109.6
O3	C3	C7'	108.1	109.6
C3	O3	HO3	109.5	114.0
C4	C3	C7'	114.4	109.6
C3	C4	O4	108.9	109.5
C3	C4	C5	114.3	109.2
C3	C4	H4	107.5	109.5
C3	C7'	H7'	109.5	109.5
C3	C7'	O7'	109.5	109.4
C3	C7'	H14	109.5	109.5
O4	C4	C5	112.2	109.5
O4	C4	H4	109.8	109.5
C4	O4	HO4	109.5	114.1
C5	C4	H4	103.8	109.6
C4	C5	O5	111.2	109.4
C4	C5	C6	113.6	109.5
C4	C5	H5	103.8	109.4
O5	C5	C6	103.9	109.5
O5	C5	H5	113.5	109.5
C6	C5	H5	111.1	109.5
C5	C6	O6	110.9	109.5
C5	C6	H61	109.0	109.4
C5	C6	H62	109.0	109.4
O6	C6	H61	109.0	109.5
O6	C6	H62	109.0	109.5
C6	O6	HO6	109.5	114.0
H61	C6	H62	110.0	109.6
H7'	C7'	O7'	109.5	109.4
H7'	C7'	H14	109.5	109.5
O7'	C7'	H14	109.5	109.5
C7'	O7'	H15	109.5	114.0

Torsion Angles for GP0

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2A	C1A	N1	H1A	180.0	180.3
N1	C1A	C2A	F1	179.2	180.0
N1	C1A	C2A	C3A	359.7	359.9
C5A	N1	C1A	C1	180.6	180.0
C1A	N1	C5A	N4	0.4	359.9
C1A	N1	C5A	O5A	180.7	180.0
C1A	N1	C1	C2	316.2	115.0
C1A	N1	C1	O5	82.5	234.9
C1A	N1	C1	H1	199.0	355.0
N1	C1A	C2A	H1A	180.0	179.7
C2A	C1A	N1	C5A	359.9	0.1
C2A	C1A	N1	C1	179.4	180.0
F1	C2A	C1A	C3A	179.5	180.1
C1A	C2A	C3A	O3A	181.5	180.0
C1A	C2A	C3A	N4	0.3	0.1
N1	C1A	H1A	C2A	180.0	180.3
H1A	C1A	N1	C5A	179.9	179.7
H1A	C1A	N1	C1	359.4	359.7
H1A	C1A	C2A	F1	359.2	0.3
H1A	C1A	C2A	C3A	179.7	180.3
F1	C2A	C1A	H1A	359.2	0.3
C1A	C2A	F1	C3A	180.5	179.9
F1	C2A	C3A	O3A	2.0	360.0
F1	C2A	C3A	N4	180.8	180.0
C5A	N1	C1A	C2A	359.9	0.1
C5A	N1	C1A	H1A	179.9	179.7
C1A	N1	C5A	C1	179.4	180.0
C5A	N1	C1	C2	135.7	294.9
C5A	N1	C1	O5	261.9	54.9
C5A	N1	C1	H1	18.4	175.0
C3A	N4	C5A	N1	359.6	0.1
N1	C5A	N4	HN4	179.6	180.0
N4	C5A	N1	O5A	179.7	179.9
C1	N1	C1A	C2A	179.4	180.0
C1	N1	C1A	H1A	359.4	359.7
C1A	N1	C1	C5A	180.6	180.0
C1	N1	C5A	N4	180.9	179.9
C1	N1	C5A	O5A	1.3	0.0
C2	C1	N1	O5	233.7	240.0
C2	C1	N1	H1	117.3	120.0
N1	C1	C2	O2	313.8	297.5
N1	C1	C2	C3	189.1	177.6
N1	C1	C2	H2	71.0	57.7
O5	C1	N1	H1	243.5	240.0
N1	C1	O5	C5	165.0	178.9
C3A	C2A	C1A	H1A	179.7	180.3
C1A	C2A	C3A	F1	179.5	180.1
O3A	C3A	C2A	N4	181.2	179.9
C2A	C3A	N4	C5A	0.0	359.9
C2A	C3A	N4	HN4	180.0	180.0
C2A	C3A	O3A	N4	178.8	180.1
O3A	C3A	N4	C5A	178.9	179.9
O3A	C3A	N4	HN4	358.9	0.1
N1	C5A	N4	C3A	359.6	0.1
C2A	C3A	N4	O3A	181.2	179.9
C5A	N4	C3A	HN4	180.0	179.9
C3A	N4	C5A	O5A	179.3	180.0
N4	C5A	N1	C1	180.9	179.9
N1	C5A	N4	O5A	180.3	180.1
C3A	N4	C5A	HN4	180.0	180.1
C3A	N4	HN4	C5A	180.0	179.9
HN4	N4	C5A	O5A	359.3	359.9
O5A	C5A	N1	C1	1.3	0.0
N1	C5A	O5A	N4	179.7	179.9
O5A	C5A	N4	HN4	359.3	359.9
N1	C1	C2	O5	127.8	120.0
N1	C1	C2	H1	244.6	240.0
O5	C1	C2	H1	116.8	120.0
C2	C1	O5	C5	292.3	298.9
O2	C2	C1	C3	124.7	119.9
O2	C2	C1	H2	242.8	239.9
C1	C2	O2	HO2	180.0	60.0
C3	C2	C1	H2	118.1	119.9
C1	C2	C3	O3	197.2	183.2
C1	C2	C3	C4	312.0	303.1
C1	C2	C3	C7'	77.6	63.0
N1	C1	O5	C2	232.8	240.0
N1	C1	O5	H1	115.3	120.0
C2	C1	O5	H1	242.5	240.1
O5	C1	C2	O2	186.0	177.5
O5	C1	C2	C3	61.3	57.6
O5	C1	C2	H2	303.3	297.6
C4	C5	O5	C1	63.3	61.1
C1	O5	C5	C6	185.9	181.1
C1	O5	C5	H5	306.7	301.2
N1	C1	H1	C2	120.1	120.0
N1	C1	H1	O5	239.2	240.0
C2	C1	H1	O5	119.1	119.9
H1	C1	C2	O2	69.2	57.5
H1	C1	C2	C3	304.5	297.6
H1	C1	C2	H2	186.4	177.7
H1	C1	O5	C5	49.8	58.8
O2	C2	C1	O5	186.0	177.5
O2	C2	C1	H1	69.2	57.5
C1	C2	O2	C3	235.5	240.3
C1	C2	O2	H2	117.5	120.1
C3	C2	O2	H2	242.0	239.9
O2	C2	C3	O3	72.2	63.2
O2	C2	C3	C4	187.0	183.1
O2	C2	C3	C7'	312.6	303.0
C3	C2	C1	O5	61.3	57.6
C3	C2	C1	H1	304.5	297.6
C1	C2	C3	O2	125.0	120.0
C1	C2	C3	H2	242.4	240.1
O2	C2	C3	H2	117.3	120.1
C3	C2	O2	HO2	304.4	179.7
O3	C3	C2	C4	245.2	240.1
O3	C3	C2	C7'	119.6	120.2
C2	C3	O3	HO3	180.0	180.0
C4	C3	C2	C7'	234.4	240.1
C2	C3	C4	O4	171.9	176.8
C2	C3	C4	C5	45.6	56.9
C2	C3	C4	H4	290.9	296.9
C2	C3	C7'	H7'	311.2	65.1
C2	C3	C7'	O7'	191.2	185.0
C2	C3	C7'	H14	71.2	305.0
H2	C2	C1	O5	303.3	297.6
H2	C2	C1	H1	186.4	177.7
C1	C2	H2	O2	239.7	239.9
C1	C2	H2	C3	119.7	119.7
O2	C2	H2	C3	240.0	239.9
H2	C2	O2	HO2	62.5	299.9
H2	C2	C3	O3	314.9	303.1
H2	C2	C3	C4	69.6	63.0
H2	C2	C3	C7'	195.3	182.9
HO2	O2	C2	C3	304.4	179.7
HO2	O2	C2	H2	62.5	299.9
O3	C3	C2	H2	314.9	303.1
C2	C3	O3	C4	117.1	119.6
C2	C3	O3	C7'	239.5	239.9
C4	C3	O3	C7'	122.4	120.3
O3	C3	C4	O4	290.9	296.7
O3	C3	C4	C5	164.5	176.8
O3	C3	C4	H4	49.9	56.8
O3	C3	C7'	H7'	189.6	304.9
O3	C3	C7'	O7'	69.6	64.8
O3	C3	C7'	H14	309.6	184.8
C4	C3	C2	H2	69.6	63.0
C2	C3	C4	O3	241.0	240.1
C2	C3	C4	C7'	122.8	119.8
O3	C3	C4	C7'	241.8	239.7
C4	C3	O3	HO3	62.9	60.5
C4	C3	C7'	H7'	73.4	184.6
C4	C3	C7'	O7'	313.4	304.5
C4	C3	C7'	H14	193.4	64.5
O4	C4	C3	C5	126.4	119.9
O4	C4	C3	H4	241.1	239.9
C3	C4	O4	HO4	180.0	179.9
C5	C4	C3	H4	114.7	120.0
C3	C4	C5	O5	305.4	302.4
C3	C4	C5	C6	188.6	182.4
C3	C4	C5	H5	67.8	62.3
C7'	C3	C2	H2	195.3	182.9
C2	C3	C7'	O3	121.5	120.2
C2	C3	C7'	C4	237.8	240.5
O3	C3	C7'	C4	116.2	120.3
C7'	C3	O3	HO3	300.5	300.2
C7'	C3	C4	O4	49.1	57.0
C7'	C3	C4	C5	282.7	297.1
C7'	C3	C4	H4	168.1	177.1
H7'	C7'	C3	O7'	120.0	240.0
H7'	C7'	C3	H14	240.0	120.1
O7'	C7'	C3	H14	120.0	240.0
C3	C7'	O7'	H15	180.0	180.1
HO3	O3	C3	C4	62.9	60.5
HO3	O3	C3	C7'	300.5	300.2
O4	C4	C3	C7'	49.1	57.0
C3	C4	O4	C5	232.4	240.3
C3	C4	O4	H4	117.5	120.0
C5	C4	O4	H4	245.1	239.8
O4	C4	C5	O5	180.7	182.5
O4	C4	C5	C6	64.0	62.5
O4	C4	C5	H5	303.2	302.4
C1	O5	C5	C4	63.3	61.1
C5	C4	C3	C7'	282.7	297.1
C3	C4	C5	O4	124.6	119.9
C3	C4	C5	H4	243.2	240.1
O4	C4	C5	H4	118.5	120.2
C5	C4	O4	HO4	307.6	299.7
O5	C5	C4	C6	116.8	120.0
O5	C5	C4	H5	237.6	240.1
C6	C5	C4	H5	120.8	120.1
C4	C5	C6	O6	55.6	185.0
C4	C5	C6	H61	175.6	305.0
C4	C5	C6	H62	295.6	65.0
H4	C4	C3	C7'	168.1	177.1
C3	C4	H4	O4	241.7	239.9
C3	C4	H4	C5	121.5	119.8
O4	C4	H4	C5	239.8	239.9
H4	C4	O4	HO4	62.5	59.9
H4	C4	C5	O5	62.2	62.3
H4	C4	C5	C6	305.4	302.3
H4	C4	C5	H5	184.6	182.3
HO4	O4	C4	C5	307.6	299.7
HO4	O4	C4	H4	62.5	59.9
C5	O5	C1	H1	49.8	58.8
O5	C5	C4	H4	62.2	62.3
C4	C5	O5	C6	237.4	240.0
C4	C5	O5	H5	116.6	119.9
C6	C5	O5	H5	239.2	239.9
O5	C5	C6	O6	294.7	65.1
O5	C5	C6	H61	54.7	185.0
O5	C5	C6	H62	174.7	305.1
C6	C5	C4	H4	305.4	302.3
C4	C5	C6	O5	120.9	119.9
C4	C5	C6	H5	243.4	240.0
O5	C5	C6	H5	122.5	120.0
O6	C6	C5	H61	240.0	240.0
O6	C6	C5	H62	120.0	120.0
C5	C6	O6	HO6	180.0	180.0
H61	C6	C5	H62	240.0	239.9
H5	C5	C4	H4	184.6	182.3
C4	C5	H5	O5	239.2	240.1
C4	C5	H5	C6	122.5	120.1
O5	C5	H5	C6	243.3	240.0
H5	C5	C6	O6	172.2	305.0
H5	C5	C6	H61	292.2	65.0
H5	C5	C6	H62	52.2	185.1
O6	C6	C5	H5	172.2	305.0
C5	C6	O6	H61	120.0	119.9
C5	C6	O6	H62	240.0	240.0
H61	C6	O6	H62	120.0	120.1
H61	C6	C5	H5	292.2	65.0
C5	C6	H61	O6	238.8	240.0
C5	C6	H61	H62	119.4	120.0
O6	C6	H61	H62	240.6	240.0
H61	C6	O6	HO6	60.0	60.1
H62	C6	C5	H5	52.2	185.1
C5	C6	H62	O6	121.1	120.0
C5	C6	H62	H61	240.6	240.0
O6	C6	H62	H61	119.5	120.0
H62	C6	O6	HO6	300.0	300.0
HO6	O6	C6	H61	60.0	60.1
HO6	O6	C6	H62	300.0	300.0
C3	C7'	H7'	O7'	240.0	120.0
C3	C7'	H7'	H14	120.0	239.9
O7'	C7'	H7'	H14	240.0	120.0
H7'	C7'	O7'	H15	59.9	300.0
C3	C7'	O7'	H7'	120.0	240.0
C3	C7'	O7'	H14	240.0	120.0
H7'	C7'	O7'	H14	120.0	240.0
C3	C7'	H14	H7'	240.0	120.1
C3	C7'	H14	O7'	120.0	240.0
H7'	C7'	H14	O7'	240.0	120.0
H14	C7'	O7'	H15	299.9	60.1
H15	O7'	C7'	H14	299.9	60.1