PDB Chemical Component GOM

Ideal Model

Chemical Description

Name GLUTAMOL-AMP
Formula C15 H22 N6 O9 P
Formal charge -1
Molecular weight 461.344 g/mol
Component type RNA LINKING
Nonstandard Parent Id G

Chemical features

Atom count 53
Chiral atom count 5
Chiral atoms CA C4' C1' C2' C3'
Observed leaving atoms OP3 HO3'
Bond count 55
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 5'-O-({[(2S)-2-ammonio-4-carboxylatobutyl]oxy}phosphinato)adenosine
Systematic name (OpenEye OEToolkits) (4S)-5-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-oxido-phosphoryl]oxy-4-azaniumyl-pentanoate

Chemical Descriptors

Stereo SMILES (CACTVS) Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P]([O-])(=O)OC[C@@H]([NH3+])CCC([O-])=O)[C@@H](O)[C@H]3O
SMILES (CACTVS) Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P]([O-])(=O)OC[CH]([NH3+])CCC([O-])=O)[CH](O)[CH]3O
Stereo SMILES (OpenEye) c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)([O-])OC[C@H](CCC(=O)[O-])[NH3+])O)O)N
InChI descriptor InChI=1S/C15H23N6O9P/c16-7(1-2-9(22)23)3-28-31(26,27)29-4-8-11(24)12(25)15(30-8)21-6-20-10-13(17)18-5-19-14(10)21/h5-8,11-12,15,24-25H,1-4,16H2,(H,22,23)(H,26,27)(H2,17,18,19)/p-1/t7-,8+,11+,12+,15+/m0/s1
InChIKey descriptor JDELUWYDJMPPMI-SBZSCLMQSA-M

Status Information

Last modified 2011-06-04
Created 2002-11-26
Release status REL
Processing site RCSB