PDB Chemical Component GOB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for GOB
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
O2 |
1.441 |
1.429 |
| C1 |
H1 |
1.100 |
1.090 |
| C1 |
H1A |
1.100 |
1.090 |
| C1 |
H1B |
1.100 |
1.091 |
| C3 |
O2 |
1.374 |
1.359 |
| C3 |
C4 |
1.388 |
1.385 |
| C3 |
C8 |
1.413 |
1.393 |
| C4 |
C5 |
1.402 |
1.387 |
| C4 |
H4 |
1.080 |
1.081 |
| C5 |
C6 |
1.407 |
1.386 |
| O34 |
C5 |
1.376 |
1.360 |
| S17 |
C6 |
1.777 |
1.762 |
| C6 |
C7 |
1.394 |
1.382 |
| C7 |
C8 |
1.394 |
1.387 |
| C7 |
H7 |
1.080 |
1.081 |
| C8 |
N9 |
1.405 |
1.402 |
| N9 |
C10 |
1.352 |
1.348 |
| N9 |
HN9 |
1.000 |
0.970 |
| O11 |
C10 |
1.223 |
1.212 |
| C10 |
C12 |
1.514 |
1.507 |
| C12 |
C13 |
1.523 |
1.530 |
| C12 |
H12 |
1.100 |
1.091 |
| C12 |
H12A |
1.100 |
1.091 |
| C13 |
C14 |
1.510 |
1.506 |
| C13 |
H13 |
1.100 |
1.091 |
| C13 |
H13A |
1.100 |
1.090 |
| C14 |
O15 |
1.218 |
1.209 |
| C14 |
O16 |
1.323 |
1.342 |
| O16 |
HO16 |
0.950 |
0.967 |
| O18 |
S17 |
1.404 |
1.421 |
| N20 |
S17 |
1.676 |
1.656 |
| S17 |
O19 |
1.414 |
1.420 |
| C27 |
N20 |
1.410 |
1.400 |
| N20 |
C21 |
1.418 |
1.397 |
| C22 |
C21 |
1.409 |
1.389 |
| C21 |
C26 |
1.410 |
1.389 |
| C22 |
C23 |
1.398 |
1.381 |
| C22 |
H22 |
1.080 |
1.080 |
| C23 |
C24 |
1.393 |
1.383 |
| C23 |
H23 |
1.080 |
1.080 |
| C24 |
C25 |
1.404 |
1.382 |
| C24 |
H24 |
1.080 |
1.080 |
| C26 |
C25 |
1.391 |
1.381 |
| C25 |
H25 |
1.080 |
1.081 |
| C26 |
H26 |
1.080 |
1.080 |
| C28 |
C27 |
1.394 |
1.389 |
| C32 |
C27 |
1.401 |
1.389 |
| C29 |
C28 |
1.390 |
1.381 |
| C28 |
H28 |
1.080 |
1.080 |
| C30 |
C29 |
1.389 |
1.389 |
| C29 |
H29 |
1.080 |
1.080 |
| N33 |
C30 |
1.394 |
1.400 |
| C30 |
C31 |
1.395 |
1.388 |
| C31 |
C32 |
1.388 |
1.381 |
| C31 |
H31 |
1.080 |
1.080 |
| C32 |
H32 |
1.080 |
1.081 |
| N33 |
HN33 |
1.000 |
0.970 |
| N33 |
HN3A |
1.000 |
0.970 |
| C35 |
O34 |
1.443 |
1.428 |
| C35 |
H35 |
1.100 |
1.090 |
| C35 |
H35A |
1.100 |
1.090 |
| C35 |
H35B |
1.100 |
1.090 |
Bond Angles for GOB
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2 |
C1 |
H1 |
109.5 |
109.5 |
| O2 |
C1 |
H1A |
109.5 |
109.5 |
| O2 |
C1 |
H1B |
109.4 |
109.5 |
| H1 |
C1 |
H1A |
109.5 |
109.4 |
| H1 |
C1 |
H1B |
109.5 |
109.5 |
| H1A |
C1 |
H1B |
109.5 |
109.5 |
| C4 |
C3 |
C8 |
120.0 |
119.9 |
| C3 |
C4 |
C5 |
119.5 |
120.0 |
| C3 |
C4 |
H4 |
120.2 |
120.0 |
| C3 |
C8 |
C7 |
120.8 |
119.9 |
| C3 |
C8 |
N9 |
115.9 |
120.1 |
| C5 |
C4 |
H4 |
120.2 |
120.0 |
| C4 |
C5 |
C6 |
120.2 |
120.1 |
| C5 |
C6 |
C7 |
120.5 |
120.1 |
| C6 |
C7 |
C8 |
119.1 |
120.1 |
| C6 |
C7 |
H7 |
120.5 |
120.0 |
| C8 |
C7 |
H7 |
120.5 |
120.0 |
| C7 |
C8 |
N9 |
123.3 |
120.0 |
| C8 |
N9 |
C10 |
129.5 |
120.0 |
| C8 |
N9 |
HN9 |
115.3 |
120.0 |
| C10 |
N9 |
HN9 |
115.3 |
120.0 |
| N9 |
C10 |
C12 |
113.6 |
120.0 |
| O11 |
C10 |
C12 |
122.5 |
120.0 |
| C10 |
C12 |
C13 |
112.7 |
109.5 |
| C10 |
C12 |
H12 |
108.4 |
109.5 |
| C10 |
C12 |
H12A |
108.4 |
109.5 |
| C13 |
C12 |
H12 |
108.4 |
109.5 |
| C13 |
C12 |
H12A |
108.4 |
109.4 |
| C12 |
C13 |
C14 |
104.2 |
109.5 |
| C12 |
C13 |
H13 |
111.2 |
109.5 |
| C12 |
C13 |
H13A |
111.2 |
109.4 |
| H12 |
C12 |
H12A |
110.5 |
109.5 |
| C14 |
C13 |
H13 |
111.2 |
109.5 |
| C14 |
C13 |
H13A |
111.3 |
109.5 |
| C13 |
C14 |
O15 |
122.2 |
120.0 |
| C13 |
C14 |
O16 |
118.1 |
120.0 |
| H13 |
C13 |
H13A |
107.7 |
109.4 |
| O15 |
C14 |
O16 |
119.7 |
120.0 |
| C14 |
O16 |
HO16 |
109.5 |
117.0 |
| O18 |
S17 |
O19 |
124.9 |
123.2 |
| N20 |
C21 |
C26 |
120.8 |
120.1 |
| C22 |
C21 |
C26 |
119.4 |
119.9 |
| C21 |
C26 |
C25 |
120.3 |
119.9 |
| C21 |
C26 |
H26 |
119.9 |
120.1 |
| C23 |
C22 |
H22 |
119.9 |
120.0 |
| C22 |
C23 |
C24 |
119.8 |
120.0 |
| C22 |
C23 |
H23 |
120.1 |
120.0 |
| C24 |
C23 |
H23 |
120.1 |
120.0 |
| C23 |
C24 |
C25 |
120.6 |
120.2 |
| C23 |
C24 |
H24 |
119.7 |
119.9 |
| C25 |
C24 |
H24 |
119.7 |
119.9 |
| C24 |
C25 |
H25 |
120.1 |
120.0 |
| C26 |
C25 |
H25 |
120.1 |
119.9 |
| C29 |
C28 |
H28 |
120.1 |
120.0 |
| C30 |
C29 |
H29 |
120.0 |
120.0 |
| C30 |
C31 |
C32 |
119.3 |
120.0 |
| C30 |
C31 |
H31 |
120.4 |
120.0 |
| C32 |
C31 |
H31 |
120.3 |
120.0 |
| C31 |
C32 |
H32 |
119.8 |
120.0 |
| HN33 |
N33 |
HN3A |
109.5 |
120.1 |
| H35 |
C35 |
H35A |
109.4 |
109.5 |
| H35 |
C35 |
H35B |
109.5 |
109.4 |
| H35A |
C35 |
H35B |
109.5 |
109.5 |
Torsion Angles for GOB
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H1 |
C1 |
O2 |
H1A |
240.0 |
240.0 |
| H1 |
C1 |
O2 |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
O2 |
H1B |
240.0 |
240.0 |
| O2 |
C1 |
H1 |
H1A |
120.0 |
120.0 |
| O2 |
C1 |
H1 |
H1B |
240.0 |
240.0 |
| H1A |
C1 |
H1 |
H1B |
120.0 |
120.0 |
| O2 |
C1 |
H1A |
H1 |
240.0 |
240.0 |
| O2 |
C1 |
H1A |
H1B |
120.0 |
120.0 |
| H1 |
C1 |
H1A |
H1B |
240.0 |
240.0 |
| O2 |
C1 |
H1B |
H1 |
120.0 |
120.0 |
| O2 |
C1 |
H1B |
H1A |
240.0 |
240.0 |
| H1 |
C1 |
H1B |
H1A |
120.0 |
120.0 |
| C3 |
O2 |
C1 |
H1 |
180.0 |
300.0 |
| C3 |
O2 |
C1 |
H1A |
300.0 |
60.0 |
| C3 |
O2 |
C1 |
H1B |
60.0 |
180.0 |
| C4 |
C3 |
C8 |
C7 |
0.0 |
359.5 |
| C4 |
C3 |
C8 |
N9 |
181.5 |
179.7 |
| C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
| C3 |
C4 |
C5 |
C6 |
1.4 |
0.0 |
| C8 |
C3 |
C4 |
C5 |
359.2 |
0.2 |
| C8 |
C3 |
C4 |
H4 |
179.2 |
180.3 |
| C6 |
C7 |
C8 |
C3 |
0.1 |
0.5 |
| C3 |
C8 |
C7 |
H7 |
180.2 |
180.3 |
| C7 |
C8 |
C3 |
N9 |
178.5 |
179.7 |
| C3 |
C8 |
N9 |
C10 |
165.9 |
211.4 |
| C3 |
C8 |
N9 |
HN9 |
345.9 |
31.3 |
| C5 |
C4 |
C3 |
C8 |
359.2 |
0.2 |
| C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
C7 |
358.7 |
360.0 |
| H4 |
C4 |
C3 |
C8 |
179.2 |
180.3 |
| C3 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
| H4 |
C4 |
C5 |
C6 |
181.4 |
180.0 |
| C6 |
C5 |
C4 |
H4 |
181.4 |
180.0 |
| C5 |
C6 |
C7 |
C8 |
0.5 |
359.7 |
| C5 |
C6 |
C7 |
H7 |
180.4 |
180.0 |
| O34 |
C5 |
C4 |
H4 |
0.2 |
360.0 |
| S17 |
C6 |
C7 |
H7 |
358.1 |
360.0 |
| C3 |
C8 |
C7 |
C6 |
0.1 |
0.5 |
| C8 |
C7 |
C6 |
H7 |
180.0 |
179.7 |
| C6 |
C7 |
C8 |
N9 |
178.5 |
180.3 |
| C3 |
C8 |
C7 |
N9 |
181.6 |
180.3 |
| C6 |
C7 |
C8 |
H7 |
180.0 |
180.3 |
| C7 |
C8 |
N9 |
C10 |
347.5 |
31.7 |
| C7 |
C8 |
N9 |
HN9 |
167.5 |
211.6 |
| C6 |
C7 |
H7 |
C8 |
180.0 |
179.7 |
| H7 |
C7 |
C8 |
N9 |
358.5 |
0.0 |
| C3 |
C8 |
N9 |
C7 |
178.4 |
179.7 |
| N9 |
C8 |
C7 |
H7 |
358.5 |
0.0 |
| C10 |
N9 |
C8 |
HN9 |
180.0 |
180.1 |
| C8 |
N9 |
C10 |
C12 |
182.8 |
184.6 |
| C8 |
N9 |
C10 |
HN9 |
180.0 |
179.9 |
| O11 |
C10 |
N9 |
C12 |
179.3 |
180.0 |
| N9 |
C10 |
C12 |
C13 |
218.5 |
180.0 |
| N9 |
C10 |
C12 |
H12 |
338.5 |
300.0 |
| N9 |
C10 |
C12 |
H12A |
98.5 |
60.0 |
| C8 |
N9 |
HN9 |
C10 |
180.0 |
180.1 |
| HN9 |
N9 |
C10 |
C12 |
2.8 |
4.7 |
| O11 |
C10 |
N9 |
HN9 |
182.0 |
184.6 |
| N9 |
C10 |
O11 |
C12 |
180.8 |
180.0 |
| O11 |
C10 |
C12 |
C13 |
39.2 |
360.0 |
| O11 |
C10 |
C12 |
H12 |
159.2 |
120.0 |
| O11 |
C10 |
C12 |
H12A |
279.2 |
240.0 |
| C12 |
C10 |
N9 |
HN9 |
2.8 |
4.7 |
| C13 |
C12 |
C10 |
H12 |
240.0 |
240.0 |
| C13 |
C12 |
C10 |
H12A |
120.0 |
120.0 |
| C10 |
C12 |
C13 |
C14 |
182.8 |
180.0 |
| C10 |
C12 |
C13 |
H13 |
302.8 |
300.0 |
| C10 |
C12 |
C13 |
H13A |
62.8 |
60.0 |
| H12 |
C12 |
C10 |
H12A |
240.0 |
240.0 |
| C10 |
C12 |
C13 |
H12 |
120.0 |
120.0 |
| C10 |
C12 |
C13 |
H12A |
240.0 |
240.0 |
| H12 |
C12 |
C13 |
H12A |
120.0 |
119.9 |
| C14 |
C13 |
C12 |
H13 |
240.0 |
239.9 |
| C14 |
C13 |
C12 |
H13A |
120.0 |
120.0 |
| C12 |
C13 |
C14 |
O15 |
73.6 |
0.0 |
| C12 |
C13 |
C14 |
O16 |
253.4 |
180.0 |
| H13 |
C13 |
C12 |
H13A |
240.0 |
240.1 |
| C10 |
C12 |
H12 |
C13 |
237.3 |
240.0 |
| C10 |
C12 |
H12 |
H12A |
118.7 |
120.1 |
| C13 |
C12 |
H12 |
H12A |
241.3 |
240.1 |
| H12 |
C12 |
C13 |
C14 |
62.8 |
59.9 |
| H12 |
C12 |
C13 |
H13 |
182.8 |
180.0 |
| H12 |
C12 |
C13 |
H13A |
302.8 |
299.9 |
| C10 |
C12 |
H12A |
C13 |
122.7 |
120.0 |
| C10 |
C12 |
H12A |
H12 |
241.3 |
239.9 |
| C13 |
C12 |
H12A |
H12 |
118.7 |
119.9 |
| H12A |
C12 |
C13 |
C14 |
302.8 |
300.0 |
| H12A |
C12 |
C13 |
H13 |
62.8 |
60.1 |
| H12A |
C12 |
C13 |
H13A |
182.8 |
180.0 |
| C14 |
C13 |
C12 |
H12 |
62.8 |
59.9 |
| C14 |
C13 |
C12 |
H12A |
302.8 |
300.0 |
| C12 |
C13 |
C14 |
H13 |
120.0 |
120.0 |
| C12 |
C13 |
C14 |
H13A |
240.0 |
240.0 |
| H13 |
C13 |
C14 |
H13A |
120.0 |
120.0 |
| O15 |
C14 |
C13 |
O16 |
180.2 |
180.0 |
| C13 |
C14 |
O16 |
HO16 |
180.2 |
180.0 |
| H13 |
C13 |
C12 |
H12 |
182.8 |
180.0 |
| H13 |
C13 |
C12 |
H12A |
62.8 |
60.1 |
| C12 |
C13 |
H13 |
C14 |
244.3 |
239.9 |
| C12 |
C13 |
H13 |
H13A |
122.1 |
119.9 |
| C14 |
C13 |
H13 |
H13A |
237.9 |
240.0 |
| H13 |
C13 |
C14 |
O15 |
313.6 |
240.0 |
| H13 |
C13 |
C14 |
O16 |
133.5 |
60.0 |
| H13A |
C13 |
C12 |
H12 |
302.8 |
299.9 |
| H13A |
C13 |
C12 |
H12A |
182.8 |
180.0 |
| C12 |
C13 |
H13A |
C14 |
115.7 |
120.0 |
| C12 |
C13 |
H13A |
H13 |
237.9 |
240.1 |
| C14 |
C13 |
H13A |
H13 |
122.1 |
120.0 |
| H13A |
C13 |
C14 |
O15 |
193.6 |
120.0 |
| H13A |
C13 |
C14 |
O16 |
13.4 |
300.0 |
| O15 |
C14 |
C13 |
H13 |
313.6 |
240.0 |
| O15 |
C14 |
C13 |
H13A |
193.6 |
120.0 |
| C13 |
C14 |
O15 |
O16 |
179.8 |
180.0 |
| O15 |
C14 |
O16 |
HO16 |
360.0 |
360.0 |
| O16 |
C14 |
C13 |
H13 |
133.5 |
60.0 |
| O16 |
C14 |
C13 |
H13A |
13.4 |
300.0 |
| C13 |
C14 |
O16 |
O15 |
180.2 |
180.0 |
| C22 |
C21 |
N20 |
C26 |
180.6 |
180.4 |
| N20 |
C21 |
C26 |
C25 |
181.7 |
179.7 |
| N20 |
C21 |
C26 |
H26 |
1.7 |
0.1 |
| N20 |
C21 |
C22 |
C26 |
179.4 |
179.6 |
| C22 |
C21 |
C26 |
C25 |
1.1 |
359.4 |
| C22 |
C21 |
C26 |
H26 |
181.1 |
179.7 |
| C21 |
C26 |
C25 |
H25 |
178.6 |
180.4 |
| C23 |
C22 |
C21 |
C26 |
359.5 |
0.3 |
| C24 |
C23 |
C22 |
H23 |
180.0 |
180.1 |
| C22 |
C23 |
C24 |
C25 |
359.6 |
359.9 |
| C22 |
C23 |
C24 |
H24 |
179.6 |
180.0 |
| H22 |
C22 |
C21 |
C26 |
179.5 |
180.3 |
| H22 |
C22 |
C23 |
C24 |
180.2 |
180.1 |
| H22 |
C22 |
C23 |
H23 |
0.2 |
359.9 |
| C24 |
C23 |
C22 |
H22 |
180.2 |
180.1 |
| C22 |
C23 |
C24 |
H23 |
180.0 |
179.9 |
| C25 |
C24 |
C23 |
H24 |
180.0 |
180.0 |
| C23 |
C24 |
C25 |
H25 |
181.0 |
180.0 |
| H23 |
C23 |
C22 |
H22 |
0.2 |
359.9 |
| C22 |
C23 |
H23 |
C24 |
180.0 |
180.1 |
| H23 |
C23 |
C24 |
C25 |
179.6 |
180.0 |
| H23 |
C23 |
C24 |
H24 |
359.6 |
0.1 |
| C21 |
C26 |
C25 |
C24 |
358.6 |
0.6 |
| C25 |
C24 |
C23 |
H23 |
179.6 |
180.0 |
| C23 |
C24 |
C25 |
H24 |
180.0 |
180.0 |
| C26 |
C25 |
C24 |
H25 |
180.0 |
179.8 |
| H24 |
C24 |
C23 |
H23 |
359.6 |
0.1 |
| C23 |
C24 |
H24 |
C25 |
180.0 |
180.0 |
| H24 |
C24 |
C25 |
H25 |
1.0 |
359.9 |
| C21 |
C26 |
C25 |
H26 |
180.0 |
180.3 |
| C26 |
C25 |
C24 |
H24 |
181.0 |
179.7 |
| C24 |
C25 |
C26 |
H25 |
180.0 |
180.2 |
| H25 |
C25 |
C24 |
H24 |
1.0 |
359.9 |
| C21 |
C26 |
H26 |
C25 |
180.0 |
179.7 |
| H26 |
C26 |
C25 |
H25 |
358.7 |
0.1 |
| C30 |
C29 |
C28 |
H28 |
179.5 |
180.0 |
| H29 |
C29 |
C28 |
H28 |
359.5 |
360.0 |
| N33 |
C30 |
C29 |
H29 |
0.4 |
360.0 |
| N33 |
C30 |
C31 |
H31 |
360.0 |
0.1 |
| C31 |
C30 |
C29 |
H29 |
179.9 |
180.1 |
| C32 |
C31 |
C30 |
H31 |
180.0 |
179.7 |
| C30 |
C31 |
C32 |
H32 |
179.7 |
180.0 |
| C30 |
C31 |
C32 |
H31 |
180.0 |
180.3 |
| C30 |
C31 |
H31 |
C32 |
180.0 |
179.7 |
| H31 |
C31 |
C32 |
H32 |
359.7 |
359.7 |
| H32 |
C32 |
C31 |
H31 |
359.7 |
359.7 |
| H35A |
C35 |
H35 |
H35B |
120.0 |
120.0 |
| H35 |
C35 |
H35A |
H35B |
240.0 |
240.1 |
| H35 |
C35 |
H35B |
H35A |
120.0 |
120.0 |